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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1384 |
| AccI | GTMKAC | 2 cut(s) | 27, 129 |
| AciI | CCGC | 1 cut(s) | 456 |
| AclWI | GGATC | 1 cut(s) | 1522 |
| AcsI | RAATTY | 1 cut(s) | 1099 |
| AcuI | CTGAAG | 2 cut(s) | 254, 1089 |
| AdeI | CACNNNGTG | 1 cut(s) | 1384 |
| AfaI | GTAC | 3 cut(s) | 43, 533, 858 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1384 |
| AflIII | ACRYGT | 1 cut(s) | 1272 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 442 |
| AhlI | ACTAGT | 1 cut(s) | 1109 |
| AjiI | CACGTC | 1 cut(s) | 220 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1108, 1140 |
| AluBI | AGCT | 3 cut(s) | 372, 545, 1067 |
| AluI | AGCT | 3 cut(s) | 372, 545, 1067 |
| Alw21I | GWGCWC | 2 cut(s) | 296, 1044 |
| Alw26I | GTCTC | 2 cut(s) | 1073, 1263 |
| AlwI | GGATC | 1 cut(s) | 1522 |
| AoxI | GGCC | 2 cut(s) | 345, 414 |
| ApeKI | GCWGC | 2 cut(s) | 340, 704 |
| ApoI | RAATTY | 1 cut(s) | 1099 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 615 |
| AspS9I | GGNCC | 4 cut(s) | 120, 346, 444, 553 |
| AsuC2I | CCSGG | 1 cut(s) | 442 |
| AsuHPI | GGTGA | 3 cut(s) | 146, 595, 688 |
| AsuII | TTCGAA | 1 cut(s) | 1301 |
| AvaII | GGWCC | 3 cut(s) | 120, 444, 553 |
| BbsI | GAAGAC | 3 cut(s) | 515, 873, 893 |
| Bbv12I | GWGCWC | 2 cut(s) | 296, 1044 |
| BbvI | GCAGC | 2 cut(s) | 327, 691 |
| BciVI | GTATCC | 2 cut(s) | 232, 473 |
| BclI | TGATCA | 2 cut(s) | 151, 1491 |
| BcnI | CCSGG | 1 cut(s) | 442 |
| BcoDI | GTCTC | 2 cut(s) | 1073, 1263 |
| BcuI | ACTAGT | 1 cut(s) | 1109 |
| BfaI | CTAG | 2 cut(s) | 1110, 1193 |
| BfmI | CTRYAG | 2 cut(s) | 921, 1477 |
| BfuI | GTATCC | 2 cut(s) | 232, 473 |
| BisI | GCNGC | 2 cut(s) | 341, 705 |
| BlpI | GCTNAGC | 1 cut(s) | 844 |
| BlsI | GCNGC | 2 cut(s) | 342, 706 |
| Bme1390I | CCNGG | 1 cut(s) | 442 |
| Bme18I | GGWCC | 3 cut(s) | 120, 444, 553 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 442 |
| BmgBI | CACGTC | 1 cut(s) | 220 |
| BmgT120I | GGNCC | 4 cut(s) | 120, 346, 444, 553 |
| BmiI | GGNNCC | 3 cut(s) | 121, 142, 554 |
| BmrFI | CCNGG | 1 cut(s) | 442 |
| BmrI | ACTGGG | 2 cut(s) | 391, 530 |
| BmsI | GCATC | 3 cut(s) | 67, 946, 1537 |
| BmuI | ACTGGG | 2 cut(s) | 391, 530 |
| BpiI | GAAGAC | 3 cut(s) | 515, 873, 893 |
| Bpu10I | CCTNAGC | 1 cut(s) | 302 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 844 |
| Bpu14I | TTCGAA | 1 cut(s) | 1301 |
| BpuEI | CTTGAG | 1 cut(s) | 799 |
| BpuMI | CCSGG | 1 cut(s) | 442 |
| BsaI | GGTCTC | 1 cut(s) | 1073 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1384 |
| Bse118I | RCCGGY | 1 cut(s) | 1441 |
| Bse1I | ACTGG | 4 cut(s) | 386, 536, 1368, 1429 |
| BseGI | GGATG | 4 cut(s) | 82, 297, 613, 1151 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1384 |
| BseMII | CTCAG | 3 cut(s) | 150, 734, 1509 |
| BseNI | ACTGG | 4 cut(s) | 386, 536, 1368, 1429 |
| BseRI | GAGGAG | 1 cut(s) | 1037 |
| BseXI | GCAGC | 2 cut(s) | 327, 691 |
| BseYI | CCCAGC | 1 cut(s) | 116 |
| BsgI | GTGCAG | 1 cut(s) | 786 |
| Bsh1285I | CGRYCG | 1 cut(s) | 640 |
| BshFI | GGCC | 2 cut(s) | 347, 416 |
| BsiEI | CGRYCG | 1 cut(s) | 640 |
| BsiHKAI | GWGCWC | 2 cut(s) | 296, 1044 |
| BsiSI | CCGG | 2 cut(s) | 442, 1442 |
| BslFI | GGGAC | 2 cut(s) | 230, 566 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1384 |
| BsmAI | GTCTC | 2 cut(s) | 1073, 1263 |
| BsmFI | GGGAC | 2 cut(s) | 230, 566 |
| BsmI | GAATGC | 2 cut(s) | 118, 1454 |
| BsnI | GGCC | 2 cut(s) | 347, 416 |
| Bso31I | GGTCTC | 1 cut(s) | 1073 |
| Bsp119I | TTCGAA | 1 cut(s) | 1301 |
| Bsp1286I | GDGCHC | 2 cut(s) | 296, 1044 |
| Bsp143I | GATC | 6 cut(s) | 151, 204, 637, 655, 1491, 1514 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 844 |
| BspACI | CCGC | 1 cut(s) | 456 |
| BspANI | GGCC | 2 cut(s) | 347, 416 |
| BspCNI | CTCAG | 3 cut(s) | 151, 735, 1510 |
| BspLI | GGNNCC | 3 cut(s) | 121, 142, 554 |
| BspPI | GGATC | 1 cut(s) | 1522 |
| BspT104I | TTCGAA | 1 cut(s) | 1301 |
| BspTNI | GGTCTC | 1 cut(s) | 1073 |
| BsrFI | RCCGGY | 1 cut(s) | 1441 |
| BsrI | ACTGG | 4 cut(s) | 386, 536, 1368, 1429 |
| BssAI | RCCGGY | 1 cut(s) | 1441 |
| BssMI | GATC | 6 cut(s) | 151, 204, 637, 655, 1491, 1514 |
| Bst4CI | ACNGT | 2 cut(s) | 480, 1478 |
| Bst6I | CTCTTC | 1 cut(s) | 1065 |
| BstBI | TTCGAA | 1 cut(s) | 1301 |
| BstC8I | GCNNGC | 3 cut(s) | 345, 590, 1443 |
| BstDEI | CTNAG | 5 cut(s) | 159, 302, 743, 844, 1518 |
| BstF5I | GGATG | 4 cut(s) | 82, 297, 613, 1151 |
| BstKTI | GATC | 6 cut(s) | 154, 207, 640, 658, 1494, 1517 |
| BstMAI | GTCTC | 2 cut(s) | 1073, 1263 |
| BstMBI | GATC | 6 cut(s) | 151, 204, 637, 655, 1491, 1514 |
| BstMCI | CGRYCG | 1 cut(s) | 640 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 369, 1206 |
| BstNSI | RCATGY | 3 cut(s) | 42, 1276, 1504 |
| BstSCI | CCNGG | 1 cut(s) | 440 |
| BstSFI | CTRYAG | 2 cut(s) | 921, 1477 |
| BstV1I | GCAGC | 2 cut(s) | 327, 691 |
| BstV2I | GAAGAC | 3 cut(s) | 515, 873, 893 |
| BstX2I | RGATCY | 1 cut(s) | 1514 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 336 |
| BstYI | RGATCY | 1 cut(s) | 1514 |
| BsuI | GTATCC | 2 cut(s) | 232, 473 |
| BsuRI | GGCC | 2 cut(s) | 347, 416 |
| BtrI | CACGTC | 1 cut(s) | 220 |
| BtsCI | GGATG | 4 cut(s) | 82, 297, 613, 1151 |
| BtsI | GCAGTG | 1 cut(s) | 1511 |
| BtsIMutI | CAGTG | 3 cut(s) | 317, 1361, 1511 |
| Cac8I | GCNNGC | 3 cut(s) | 345, 590, 1443 |
| Cfr10I | RCCGGY | 1 cut(s) | 1441 |
| Cfr13I | GGNCC | 4 cut(s) | 120, 346, 444, 553 |
| CseI | GACGC | 1 cut(s) | 1206 |
| Csp6I | GTAC | 3 cut(s) | 42, 532, 857 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 577, 612 |
| CviAII | CATG | 9 cut(s) | 39, 503, 557, 860, 1273, 1340, 1382, 1501, 1553 |
| CviQI | GTAC | 3 cut(s) | 42, 532, 857 |
| DdeI | CTNAG | 5 cut(s) | 159, 302, 743, 844, 1518 |
| DpnI | GATC | 6 cut(s) | 153, 206, 639, 657, 1493, 1516 |
| DpnII | GATC | 6 cut(s) | 151, 204, 637, 655, 1491, 1514 |
| DraI | TTTAAA | 2 cut(s) | 136, 378 |
| DraIII | CACNNNGTG | 1 cut(s) | 1384 |
| DriI | GACNNNNNGTC | 1 cut(s) | 442 |
| Eam1104I | CTCTTC | 1 cut(s) | 1065 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 442 |
| EarI | CTCTTC | 1 cut(s) | 1065 |
| Eco31I | GGTCTC | 1 cut(s) | 1073 |
| Eco47I | GGWCC | 3 cut(s) | 120, 444, 553 |
| Eco57I | CTGAAG | 2 cut(s) | 254, 1089 |
| EcoT22I | ATGCAT | 1 cut(s) | 40 |
| FaeI | CATG | 9 cut(s) | 42, 506, 560, 863, 1276, 1343, 1385, 1504, 1556 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 878, 910 |
| FaqI | GGGAC | 2 cut(s) | 230, 566 |
| FatI | CATG | 9 cut(s) | 38, 502, 556, 859, 1272, 1339, 1381, 1500, 1552 |
| FauNDI | CATATG | 1 cut(s) | 670 |
| FbaI | TGATCA | 2 cut(s) | 151, 1491 |
| FblI | GTMKAC | 2 cut(s) | 27, 129 |
| Fnu4HI | GCNGC | 2 cut(s) | 341, 705 |
| FokI | GGATG | 4 cut(s) | 89, 284, 620, 1158 |
| Fsp4HI | GCNGC | 2 cut(s) | 341, 705 |
| FspBI | CTAG | 2 cut(s) | 1110, 1193 |
| GluI | GCNGC | 2 cut(s) | 341, 705 |
| GsaI | CCCAGC | 1 cut(s) | 120 |
| HaeIII | GGCC | 2 cut(s) | 347, 416 |
| HapII | CCGG | 2 cut(s) | 442, 1442 |
| HgaI | GACGC | 1 cut(s) | 1206 |
| Hin1II | CATG | 9 cut(s) | 42, 506, 560, 863, 1276, 1343, 1385, 1504, 1556 |
| HincII | GTYRAC | 2 cut(s) | 130, 253 |
| HindII | GTYRAC | 2 cut(s) | 130, 253 |
| HindIII | AAGCTT | 1 cut(s) | 543 |
| HinfI | GANTC | 4 cut(s) | 20, 437, 911, 1283 |
| HpaII | CCGG | 2 cut(s) | 442, 1442 |
| HphI | GGTGA | 3 cut(s) | 146, 595, 688 |
| Hpy166II | GTNNAC | 6 cut(s) | 19, 28, 130, 253, 285, 520 |
| Hpy188III | TCNNGA | 3 cut(s) | 778, 1019, 1399 |
| Hpy8I | GTNNAC | 6 cut(s) | 19, 28, 130, 253, 285, 520 |
| HpyAV | CCTTC | 5 cut(s) | 187, 229, 839, 1069, 1297 |
| HpyCH4III | ACNGT | 2 cut(s) | 480, 1478 |
| HpyCH4IV | ACGT | 1 cut(s) | 219 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 369, 1206 |
| HpyF3I | CTNAG | 5 cut(s) | 159, 302, 743, 844, 1518 |
| HpySE526I | ACGT | 1 cut(s) | 219 |
| Hsp92II | CATG | 9 cut(s) | 42, 506, 560, 863, 1276, 1343, 1385, 1504, 1556 |
| KroI | GCCGGC | 1 cut(s) | 1441 |
| KroNI | GCCGGC | 1 cut(s) | 1443 |
| Ksp22I | TGATCA | 2 cut(s) | 151, 1491 |
| Kzo9I | GATC | 6 cut(s) | 151, 204, 637, 655, 1491, 1514 |
| LmnI | GCTCC | 1 cut(s) | 1047 |
| Lsp1109I | GCAGC | 2 cut(s) | 327, 691 |
| LweI | GCATC | 3 cut(s) | 67, 946, 1537 |
| MaeI | CTAG | 2 cut(s) | 1110, 1193 |
| MaeII | ACGT | 1 cut(s) | 219 |
| MaeIII | GTNAC | 8 cut(s) | 83, 977, 995, 1128, 1178, 1220, 1256, 1346 |
| MalI | GATC | 6 cut(s) | 153, 206, 639, 657, 1493, 1516 |
| MboI | GATC | 6 cut(s) | 151, 204, 637, 655, 1491, 1514 |
| MflI | RGATCY | 1 cut(s) | 1514 |
| MhlI | GDGCHC | 2 cut(s) | 296, 1044 |
| MluCI | AATT | 2 cut(s) | 1099, 1168 |
| MlyI | GAGTC | 3 cut(s) | 14, 431, 905 |
| MmeI | TCCRAC | 1 cut(s) | 702 |
| MnlI | CCTC | 7 cut(s) | 325, 406, 901, 1015, 1018, 1456, 1549 |
| Mph1103I | ATGCAT | 1 cut(s) | 40 |
| MroNI | GCCGGC | 1 cut(s) | 1441 |
| MroXI | GAANNNNTTC | 1 cut(s) | 615 |
| MseI | TTAA | 5 cut(s) | 135, 212, 377, 681, 1134 |
| MslI | CAYNNNNRTG | 2 cut(s) | 400, 1344 |
| MspA1I | CMGCKG | 1 cut(s) | 1067 |
| MspI | CCGG | 2 cut(s) | 442, 1442 |
| MspR9I | CCNGG | 1 cut(s) | 442 |
| Mva1269I | GAATGC | 2 cut(s) | 118, 1454 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 369, 1206 |
| NaeI | GCCGGC | 1 cut(s) | 1443 |
| NciI | CCSGG | 1 cut(s) | 442 |
| NdeI | CATATG | 1 cut(s) | 670 |
| NdeII | GATC | 6 cut(s) | 151, 204, 637, 655, 1491, 1514 |
| NgoMIV | GCCGGC | 1 cut(s) | 1441 |
| NlaIII | CATG | 9 cut(s) | 42, 506, 560, 863, 1276, 1343, 1385, 1504, 1556 |
| NlaIV | GGNNCC | 3 cut(s) | 121, 142, 554 |
| NmuCI | GTSAC | 4 cut(s) | 83, 1128, 1178, 1346 |
| NsiI | ATGCAT | 1 cut(s) | 40 |
| NspI | RCATGY | 3 cut(s) | 42, 1276, 1504 |
| NspV | TTCGAA | 1 cut(s) | 1301 |
| PciI | ACATGT | 1 cut(s) | 1272 |
| PctI | GAATGC | 2 cut(s) | 118, 1454 |
| PdiI | GCCGGC | 1 cut(s) | 1443 |
| PdmI | GAANNNNTTC | 1 cut(s) | 615 |
| PfeI | GAWTC | 1 cut(s) | 1283 |
| PflFI | GACNNNGTC | 1 cut(s) | 773 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1384 |
| PkrI | GCNGC | 2 cut(s) | 342, 706 |
| Ple19I | CGATCG | 1 cut(s) | 640 |
| PleI | GAGTC | 3 cut(s) | 14, 431, 905 |
| PpsI | GAGTC | 3 cut(s) | 14, 431, 905 |
| PscI | ACATGT | 1 cut(s) | 1272 |
| PspFI | CCCAGC | 1 cut(s) | 116 |
| PspN4I | GGNNCC | 3 cut(s) | 121, 142, 554 |
| PspPI | GGNCC | 4 cut(s) | 120, 346, 444, 553 |
| PsuI | RGATCY | 1 cut(s) | 1514 |
| PsyI | GACNNNGTC | 1 cut(s) | 773 |
| PvuI | CGATCG | 1 cut(s) | 640 |
| PvuII | CAGCTG | 1 cut(s) | 1067 |
| RsaI | GTAC | 3 cut(s) | 43, 533, 858 |
| RsaNI | GTAC | 3 cut(s) | 42, 532, 857 |
| RseI | CAYNNNNRTG | 2 cut(s) | 400, 1344 |
| SalI | GTCGAC | 1 cut(s) | 128 |
| SaqAI | TTAA | 5 cut(s) | 135, 212, 377, 681, 1134 |
| SatI | GCNGC | 2 cut(s) | 341, 705 |
| Sau3AI | GATC | 6 cut(s) | 151, 204, 637, 655, 1491, 1514 |
| Sau96I | GGNCC | 4 cut(s) | 120, 346, 444, 553 |
| SchI | GAGTC | 3 cut(s) | 14, 431, 905 |
| ScrFI | CCNGG | 1 cut(s) | 442 |
| SduI | GDGCHC | 2 cut(s) | 296, 1044 |
| SfaNI | GCATC | 3 cut(s) | 67, 946, 1537 |
| SfcI | CTRYAG | 2 cut(s) | 921, 1477 |
| SfuI | TTCGAA | 1 cut(s) | 1301 |
| SinI | GGWCC | 3 cut(s) | 120, 444, 553 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 400, 1344 |
| SmlI | CTYRAG | 1 cut(s) | 778 |
| SmoI | CTYRAG | 1 cut(s) | 778 |
| SpeI | ACTAGT | 1 cut(s) | 1109 |
| Sse9I | AATT | 2 cut(s) | 1099, 1168 |
| SsiI | CCGC | 1 cut(s) | 456 |
| SspMI | CTAG | 2 cut(s) | 1110, 1193 |
| StyD4I | CCNGG | 1 cut(s) | 440 |
| TaaI | ACNGT | 2 cut(s) | 480, 1478 |
| TaiI | ACGT | 1 cut(s) | 222 |
| TaqI | TCGA | 3 cut(s) | 129, 1114, 1301 |
| TasI | AATT | 2 cut(s) | 1099, 1168 |
| TatI | WGTACW | 2 cut(s) | 41, 856 |
| TfiI | GAWTC | 1 cut(s) | 1283 |
| Tru1I | TTAA | 5 cut(s) | 135, 212, 377, 681, 1134 |
| Tru9I | TTAA | 5 cut(s) | 135, 212, 377, 681, 1134 |
| TscAI | CASTG | 3 cut(s) | 324, 1368, 1511 |
| TseFI | GTSAC | 4 cut(s) | 83, 1128, 1178, 1346 |
| TseI | GCWGC | 2 cut(s) | 340, 704 |
| Tsp45I | GTSAC | 4 cut(s) | 83, 1128, 1178, 1346 |
| TspDTI | ATGAA | 4 cut(s) | 573, 624, 959, 1265 |
| TspGWI | ACGGA | 3 cut(s) | 13, 72, 1158 |
| TspRI | CASTG | 3 cut(s) | 324, 1368, 1511 |
| Tth111I | GACNNNGTC | 1 cut(s) | 773 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1384 |
| VpaK11BI | GGWCC | 3 cut(s) | 120, 444, 553 |
| XapI | RAATTY | 1 cut(s) | 1099 |
| XceI | RCATGY | 3 cut(s) | 42, 1276, 1504 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 543 |
| XmiI | GTMKAC | 2 cut(s) | 27, 129 |
| XmnI | GAANNNNTTC | 1 cut(s) | 615 |
| XspI | CTAG | 2 cut(s) | 1110, 1193 |
| Zsp2I | ATGCAT | 1 cut(s) | 40 |