Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000269

Physical Location & Seq

Genomic Coordinates Forward (+)

20902805 .. 20904056

Gene Structure 1252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG225600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGTCTAACTTGGCTGCTAAAGTGAATGGGTTGGAAAATAATATGTGCAATCTGAGAGATGATATGATGGGAAAGATGGACAAAGTCTTGAGTATGCTGAAGACTCTGACTGCACAAAATGTGAATGTCAATCAGAACCTTCAAACTGATGGCTTAGCAGAAAAAGTAAGCCCCAAGAAAGTTTCAAAAAAGAAAACTGGAGAACAACAGGAGTTGCAAACACTGGACATTATCTACCACCATGTGAAGTTCAAAGTCAAGAATGTTGTGAAGAAGTTTGCTGACTTCCAGTTATTCGAGCCGGCTGAATTCCCTAAACAAGAGGGCGGTTCTGACTGTGGGGTGTATGTGATCAAACACATGCAGTGTTATGGATCTGAGTGGTGGCATCAGTTTAACTCAGAAGAGGTACGCATGGACTTAACCATTGAATTGGTAAGGAACAAATTCAATGAGTGCTGGAAATGGATCAATGAAGCCATCAAAACTCGGCCACCACCAATATGTTCTACACCTAAGACGGCACAAAGGGAAACTAAAGCAGCACCGAAGAAAGGGACCGTGAAGAACCCAATCGTCCGACCACCTCGCACTAGAGCTCAATCCAAGAGGGGTGTGGCATCAAATGTCCGTCGTAGCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048519 GO:0050789 GO:0050896 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04931 map04931

Pfam Domains

Protein Families

PTPA

Protein Analysis

214

Amino Acids

24.52

Weight (kDa)

9.76

Isoelectric Point (pI)

41.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000269)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis	RchiOBHm_Chr7g0204351
rosa_laevigata	RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora	Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii	Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa	Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha	Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	630
Acc36I	ACCTGC	1 cut(s)	630
AciI	CCGC	1 cut(s)	327
AclWI	GGATC	2 cut(s)	382, 476
AcoI	YGGCCR	1 cut(s)	491
AcsI	RAATTY	2 cut(s)	308, 446
AcuI	CTGAAG	1 cut(s)	119
AdeI	CACNNNGTG	1 cut(s)	244
AfaI	GTAC	1 cut(s)	411
AfiI	CCNNNNNNNGG	1 cut(s)	554
AgsI	TTSAA	5 cut(s)	143, 186, 253, 431, 451
AluBI	AGCT	1 cut(s)	599
AluI	AGCT	1 cut(s)	599
Alw21I	GWGCWC	1 cut(s)	601
AlwI	GGATC	2 cut(s)	382, 476
AoxI	GGCC	1 cut(s)	491
ApeKI	GCWGC	2 cut(s)	14, 542
ApoI	RAATTY	2 cut(s)	308, 446
Asp700I	GAANNNNTTC	1 cut(s)	446
AspS9I	GGNCC	1 cut(s)	558
AvaII	GGWCC	1 cut(s)	558
BanII	GRGCYC	1 cut(s)	601
BbsI	GAAGAC	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	601
BbvI	GCAGC	1 cut(s)	554
BccI	CCATC	4 cut(s)	61, 70, 143, 488
BceAI	ACGGC	1 cut(s)	537
BclI	TGATCA	1 cut(s)	351
BfaI	CTAG	1 cut(s)	594
BfuAI	ACCTGC	1 cut(s)	630
BisI	GCNGC	2 cut(s)	15, 543
BlpI	GCTNAGC	1 cut(s)	154
BlsI	GCNGC	2 cut(s)	16, 544
Bme18I	GGWCC	1 cut(s)	558
BmgT120I	GGNCC	1 cut(s)	558
BmiI	GGNNCC	1 cut(s)	559
BmsI	GCATC	2 cut(s)	397, 629
BpiI	GAAGAC	1 cut(s)	107
BpmI	CTGGAG	1 cut(s)	219
Bpu1102I	GCTNAGC	1 cut(s)	154
BpuEI	CTTGAG	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	1 cut(s)	554
Bse118I	RCCGGY	1 cut(s)	301
Bse1I	ACTGG	3 cut(s)	202, 228, 289
BseLI	CCNNNNNNNGG	1 cut(s)	554
BseMII	CTCAG	3 cut(s)	44, 369, 414
BseNI	ACTGG	3 cut(s)	202, 228, 289
BseXI	GCAGC	1 cut(s)	554
BsgI	GTGCAG	1 cut(s)	96
BshFI	GGCC	1 cut(s)	493
BsiHKAI	GWGCWC	1 cut(s)	601
BsiSI	CCGG	1 cut(s)	302
BslFI	GGGAC	1 cut(s)	571
BslI	CCNNNNNNNGG	1 cut(s)	554
BsmFI	GGGAC	1 cut(s)	571
BsnI	GGCC	1 cut(s)	493
Bsp1286I	GDGCHC	1 cut(s)	601
Bsp143I	GATC	3 cut(s)	351, 374, 468
Bsp1720I	GCTNAGC	1 cut(s)	154
BspACI	CCGC	1 cut(s)	327
BspANI	GGCC	1 cut(s)	493
BspCNI	CTCAG	3 cut(s)	45, 370, 413
BspLI	GGNNCC	1 cut(s)	559
BspMI	ACCTGC	1 cut(s)	630
BspPI	GGATC	2 cut(s)	382, 476
BsrFI	RCCGGY	1 cut(s)	301
BsrI	ACTGG	3 cut(s)	202, 228, 289
BssAI	RCCGGY	1 cut(s)	301
BssMI	GATC	3 cut(s)	351, 374, 468
Bst4CI	ACNGT	2 cut(s)	338, 562
Bst6I	CTCTTC	1 cut(s)	399
BstC8I	GCNNGC	1 cut(s)	303
BstDEI	CTNAG	5 cut(s)	53, 154, 378, 400, 516
BstKTI	GATC	3 cut(s)	354, 377, 471
BstMBI	GATC	3 cut(s)	351, 374, 468
BstNSI	RCATGY	1 cut(s)	364
BstV1I	GCAGC	1 cut(s)	554
BstV2I	GAAGAC	1 cut(s)	107
BstX2I	RGATCY	1 cut(s)	374
BstXI	CCANNNNNNTGG	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	374
BsuRI	GGCC	1 cut(s)	493
BtsI	GCAGTG	1 cut(s)	371
BtsIMutI	CAGTG	2 cut(s)	221, 371
BveI	ACCTGC	1 cut(s)	630
Cac8I	GCNNGC	1 cut(s)	303
Cfr10I	RCCGGY	1 cut(s)	301
Cfr13I	GGNCC	1 cut(s)	558
Csp6I	GTAC	1 cut(s)	410
CviAII	CATG	3 cut(s)	242, 361, 415
CviJI	RGCY	8 cut(s)	14, 153, 171, 301, 305, 479, 493, 599
CviKI_1	RGCY	8 cut(s)	14, 153, 171, 301, 305, 479, 493, 599
CviQI	GTAC	1 cut(s)	410
DdeI	CTNAG	5 cut(s)	53, 154, 378, 400, 516
DpnI	GATC	3 cut(s)	353, 376, 470
DpnII	GATC	3 cut(s)	351, 374, 468
DraIII	CACNNNGTG	1 cut(s)	244
EaeI	YGGCCR	1 cut(s)	491
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
Ecl136II	GAGCTC	1 cut(s)	599
Eco24I	GRGCYC	1 cut(s)	601
Eco47I	GGWCC	1 cut(s)	558
Eco53kI	GAGCTC	1 cut(s)	599
Eco57I	CTGAAG	1 cut(s)	119
EcoICRI	GAGCTC	1 cut(s)	599
EcoRI	GAATTC	1 cut(s)	308
EcoT38I	GRGCYC	1 cut(s)	601
FaeI	CATG	3 cut(s)	245, 364, 418
FaiI	YATR	9 cut(s)	44, 65, 95, 243, 348, 362, 372, 416, 505
FaqI	GGGAC	1 cut(s)	571
FatI	CATG	3 cut(s)	241, 360, 414
FbaI	TGATCA	1 cut(s)	351
Fnu4HI	GCNGC	2 cut(s)	15, 543
FriOI	GRGCYC	1 cut(s)	601
Fsp4HI	GCNGC	2 cut(s)	15, 543
FspBI	CTAG	1 cut(s)	594
GluI	GCNGC	2 cut(s)	15, 543
GsuI	CTGGAG	1 cut(s)	219
HaeIII	GGCC	1 cut(s)	493
HapII	CCGG	1 cut(s)	302
Hin1II	CATG	3 cut(s)	245, 364, 418
HinfI	GANTC	1 cut(s)	103
HpaII	CCGG	1 cut(s)	302
Hpy188I	TCNGA	7 cut(s)	54, 108, 135, 334, 379, 403, 581
Hpy188III	TCNNGA	2 cut(s)	88, 259
Hpy99I	CGWCG	1 cut(s)	636
HpyAV	CCTTC	1 cut(s)	149
HpyCH4III	ACNGT	2 cut(s)	338, 562
HpyCH4V	TGCA	4 cut(s)	48, 113, 217, 364
HpyF3I	CTNAG	5 cut(s)	53, 154, 378, 400, 516
Hsp92II	CATG	3 cut(s)	245, 364, 418
KroI	GCCGGC	1 cut(s)	301
KroNI	GCCGGC	1 cut(s)	303
Ksp22I	TGATCA	1 cut(s)	351
Kzo9I	GATC	3 cut(s)	351, 374, 468
LpnPI	CCDG	7 cut(s)	183, 194, 209, 302, 315, 445, 625
Lsp1109I	GCAGC	1 cut(s)	554
LweI	GCATC	2 cut(s)	397, 629
MaeI	CTAG	1 cut(s)	594
MalI	GATC	3 cut(s)	353, 376, 470
MboI	GATC	3 cut(s)	351, 374, 468
MboII	GAAGA	5 cut(s)	112, 283, 416, 562, 577
MflI	RGATCY	1 cut(s)	374
MhlI	GDGCHC	1 cut(s)	601
MluCI	AATT	3 cut(s)	308, 431, 446
MlyI	GAGTC	1 cut(s)	97
MmeI	TCCRAC	2 cut(s)	12, 604
MnlI	CCTC	4 cut(s)	316, 400, 597, 603
MroNI	GCCGGC	1 cut(s)	301
MroXI	GAANNNNTTC	1 cut(s)	446
MseI	TTAA	2 cut(s)	396, 422
MslI	CAYNNNNRTG	1 cut(s)	502
MspI	CCGG	1 cut(s)	302
NaeI	GCCGGC	1 cut(s)	303
NdeII	GATC	3 cut(s)	351, 374, 468
NgoMIV	GCCGGC	1 cut(s)	301
NlaIII	CATG	3 cut(s)	245, 364, 418
NlaIV	GGNNCC	1 cut(s)	559
NmeAIII	GCCGAG	1 cut(s)	469
NspI	RCATGY	1 cut(s)	364
PaqCI	CACCTGC	1 cut(s)	630
PdiI	GCCGGC	1 cut(s)	303
PdmI	GAANNNNTTC	1 cut(s)	446
PflFI	GACNNNGTC	1 cut(s)	83
PkrI	GCNGC	2 cut(s)	16, 544
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
Psp124BI	GAGCTC	1 cut(s)	601
PspN4I	GGNNCC	1 cut(s)	559
PspPI	GGNCC	1 cut(s)	558
PsuI	RGATCY	1 cut(s)	374
PsyI	GACNNNGTC	1 cut(s)	83
RsaI	GTAC	1 cut(s)	411
RsaNI	GTAC	1 cut(s)	410
RseI	CAYNNNNRTG	1 cut(s)	502
SacI	GAGCTC	1 cut(s)	601
SaqAI	TTAA	2 cut(s)	396, 422
SatI	GCNGC	2 cut(s)	15, 543
Sau3AI	GATC	3 cut(s)	351, 374, 468
Sau96I	GGNCC	1 cut(s)	558
SchI	GAGTC	1 cut(s)	97
SduI	GDGCHC	1 cut(s)	601
SetI	ASST	6 cut(s)	141, 411, 517, 589, 601, 644
SfaNI	GCATC	2 cut(s)	397, 629
SinI	GGWCC	1 cut(s)	558
SmiMI	CAYNNNNRTG	1 cut(s)	502
SmlI	CTYRAG	1 cut(s)	88
SmoI	CTYRAG	1 cut(s)	88
Sse9I	AATT	3 cut(s)	308, 431, 446
SsiI	CCGC	1 cut(s)	327
SspMI	CTAG	1 cut(s)	594
SstI	GAGCTC	1 cut(s)	601
TaaI	ACNGT	2 cut(s)	338, 562
TaqI	TCGA	1 cut(s)	297
TasI	AATT	3 cut(s)	308, 431, 446
Tru1I	TTAA	2 cut(s)	396, 422
Tru9I	TTAA	2 cut(s)	396, 422
TscAI	CASTG	2 cut(s)	228, 371
TseI	GCWGC	2 cut(s)	14, 542
TspDTI	ATGAA	1 cut(s)	489
TspGWI	ACGGA	1 cut(s)	620
TspRI	CASTG	2 cut(s)	228, 371
Tth111I	GACNNNGTC	1 cut(s)	83
VpaK11BI	GGWCC	1 cut(s)	558
XapI	RAATTY	2 cut(s)	308, 446
XceI	RCATGY	1 cut(s)	364
XcmI	CCANNNNNNNNNTGG	1 cut(s)	613
XmnI	GAANNNNTTC	1 cut(s)	446
XspI	CTAG	1 cut(s)	594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.