RLG00000004189

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000269
Physical Location & Seq
Reverse (-)
57038802 .. 57039525
724 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004189

Sequence Viewer

Length: 474 bp
ATGCATGACGTCAATCATTGGTACCTCCTTGTTGTACATCTTGATAATCAGACAGGGGAAGTGTGGGATAGCTTAGAATGTAACAGGAGACGAATGAATCTGTGTAAAGCCGCTTTGCAAACACTGGACATTATCTACCACCATGTGGAGTTCAAAGTCAAGAATGTTGTGAAGAAGAAGTTTGCCGACTTCTATGTGTTAGAGCCGGCTCAATGCCCTAAACAAGAGGGCGGTTCTAACTGTGGGGTGTATGTGATCAAACACATGCAGTGTTATGGATCTGAGTGGTGGCATCAGATCGAGGAAGCCATCAAAACTCAGCCACCACCAATATGTTCTACACCTAAGACGGCACAAATGGAAACTAAAGCAGCACCAAAGAAAGGGACCGTGAAGAACCCAATCGTCCAACCACCTCGCACTAGAGCTCAATCCAAGAGGGGTGTGGCATCAAATGTCCGTCGCAGCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

158

Amino Acids

18.07

Weight (kDa)

9.46

Isoelectric Point (pI)

51.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 2 - 94 3.8e-11 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 459
AatII GACGTC 1 cut(s) 12
Acc36I ACCTGC 1 cut(s) 459
Acc65I GGTACC 1 cut(s) 21
AccB1I GGYRCC 1 cut(s) 21
AccB7I CCANNNNNTGG 1 cut(s) 145
AciI CCGC 2 cut(s) 111, 231
AclWI GGATC 1 cut(s) 286
AcyI GRCGYC 1 cut(s) 9
AdeI CACNNNGTG 1 cut(s) 145
AfaI GTAC 2 cut(s) 23, 36
AfiI CCNNNNNNNGG 2 cut(s) 145, 383
AgsI TTSAA 1 cut(s) 154
AluBI AGCT 2 cut(s) 72, 428
AluI AGCT 2 cut(s) 72, 428
Alw21I GWGCWC 1 cut(s) 430
Alw26I GTCTC 1 cut(s) 82
AlwI GGATC 1 cut(s) 286
ApeKI GCWGC 2 cut(s) 371, 465
Asp718I GGTACC 1 cut(s) 21
AspS9I GGNCC 1 cut(s) 387
AvaII GGWCC 1 cut(s) 387
BanI GGYRCC 1 cut(s) 21
BanII GRGCYC 1 cut(s) 430
Bbv12I GWGCWC 1 cut(s) 430
BbvI GCAGC 1 cut(s) 383
BccI CCATC 1 cut(s) 317
BceAI ACGGC 1 cut(s) 366
BclI TGATCA 1 cut(s) 255
BcoDI GTCTC 1 cut(s) 82
BfaI CTAG 1 cut(s) 423
BfuAI ACCTGC 1 cut(s) 459
BisI GCNGC 3 cut(s) 111, 372, 466
BlsI GCNGC 3 cut(s) 112, 373, 467
Bme18I GGWCC 1 cut(s) 387
BmgT120I GGNCC 1 cut(s) 387
BmiI GGNNCC 2 cut(s) 23, 388
BmsI GCATC 2 cut(s) 301, 458
BsaHI GRCGYC 1 cut(s) 9
Bsc4I CCNNNNNNNGG 2 cut(s) 145, 383
Bse118I RCCGGY 1 cut(s) 205
Bse1I ACTGG 1 cut(s) 129
BseLI CCNNNNNNNGG 2 cut(s) 145, 383
BseMII CTCAG 2 cut(s) 273, 332
BseNI ACTGG 1 cut(s) 129
BseXI GCAGC 1 cut(s) 383
BshNI GGYRCC 1 cut(s) 21
BsiHKAI GWGCWC 1 cut(s) 430
BsiSI CCGG 1 cut(s) 206
BslFI GGGAC 1 cut(s) 400
BslI CCNNNNNNNGG 2 cut(s) 145, 383
BsmAI GTCTC 1 cut(s) 82
BsmBI CGTCTC 1 cut(s) 82
BsmFI GGGAC 1 cut(s) 400
Bsp1286I GDGCHC 1 cut(s) 430
Bsp1407I TGTACA 1 cut(s) 34
Bsp143I GATC 3 cut(s) 255, 278, 297
BspACI CCGC 2 cut(s) 111, 231
BspCNI CTCAG 2 cut(s) 274, 331
BspLI GGNNCC 2 cut(s) 23, 388
BspMI ACCTGC 1 cut(s) 459
BspPI GGATC 1 cut(s) 286
BspT107I GGYRCC 1 cut(s) 21
BsrFI RCCGGY 1 cut(s) 205
BsrGI TGTACA 1 cut(s) 34
BsrI ACTGG 1 cut(s) 129
BssAI RCCGGY 1 cut(s) 205
BssMI GATC 3 cut(s) 255, 278, 297
BssNI GRCGYC 1 cut(s) 9
Bst4CI ACNGT 2 cut(s) 242, 391
BstACI GRCGYC 1 cut(s) 9
BstAUI TGTACA 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 207
BstDEI CTNAG 4 cut(s) 73, 282, 318, 345
BstKTI GATC 3 cut(s) 258, 281, 300
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 3 cut(s) 255, 278, 297
BstNSI RCATGY 1 cut(s) 268
BstV1I GCAGC 1 cut(s) 383
BstX2I RGATCY 1 cut(s) 278
BstYI RGATCY 1 cut(s) 278
BtsI GCAGTG 1 cut(s) 275
BtsIMutI CAGTG 2 cut(s) 122, 275
BveI ACCTGC 1 cut(s) 459
Cac8I GCNNGC 1 cut(s) 207
Cfr10I RCCGGY 1 cut(s) 205
Cfr13I GGNCC 1 cut(s) 387
Csp6I GTAC 2 cut(s) 22, 35
CviAII CATG 3 cut(s) 5, 143, 265
CviJI RGCY 7 cut(s) 72, 110, 205, 209, 308, 322, 428
CviKI_1 RGCY 7 cut(s) 72, 110, 205, 209, 308, 322, 428
CviQI GTAC 2 cut(s) 22, 35
DdeI CTNAG 4 cut(s) 73, 282, 318, 345
DpnI GATC 3 cut(s) 257, 280, 299
DpnII GATC 3 cut(s) 255, 278, 297
DraIII CACNNNGTG 1 cut(s) 145
Ecl136II GAGCTC 1 cut(s) 428
Eco24I GRGCYC 1 cut(s) 430
Eco47I GGWCC 1 cut(s) 387
Eco53kI GAGCTC 1 cut(s) 428
EcoICRI GAGCTC 1 cut(s) 428
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 430
Esp3I CGTCTC 1 cut(s) 82
FaeI CATG 3 cut(s) 8, 146, 268
FaiI YATR 7 cut(s) 6, 144, 195, 252, 266, 276, 334
FaqI GGGAC 1 cut(s) 400
FatI CATG 3 cut(s) 4, 142, 264
FbaI TGATCA 1 cut(s) 255
Fnu4HI GCNGC 3 cut(s) 111, 372, 466
FriOI GRGCYC 1 cut(s) 430
Fsp4HI GCNGC 3 cut(s) 111, 372, 466
FspBI CTAG 1 cut(s) 423
GluI GCNGC 3 cut(s) 111, 372, 466
HapII CCGG 1 cut(s) 206
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 3 cut(s) 8, 146, 268
HinfI GANTC 1 cut(s) 97
HpaII CCGG 1 cut(s) 206
Hpy188I TCNGA 3 cut(s) 51, 283, 297
Hpy188III TCNNGA 2 cut(s) 41, 160
Hpy99I CGWCG 1 cut(s) 465
HpyCH4III ACNGT 2 cut(s) 242, 391
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 3 cut(s) 4, 118, 268
HpyF3I CTNAG 4 cut(s) 73, 282, 318, 345
HpySE526I ACGT 1 cut(s) 9
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 3 cut(s) 8, 146, 268
KpnI GGTACC 1 cut(s) 25
KroI GCCGGC 1 cut(s) 205
KroNI GCCGGC 1 cut(s) 207
Ksp22I TGATCA 1 cut(s) 255
Kzo9I GATC 3 cut(s) 255, 278, 297
LpnPI CCDG 5 cut(s) 39, 70, 110, 219, 454
Lsp1109I GCAGC 1 cut(s) 383
LweI GCATC 2 cut(s) 301, 458
MaeI CTAG 1 cut(s) 423
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 1 cut(s) 80
MalI GATC 3 cut(s) 257, 280, 299
MboI GATC 3 cut(s) 255, 278, 297
MboII GAAGA 3 cut(s) 184, 187, 406
MflI RGATCY 1 cut(s) 278
MhlI GDGCHC 1 cut(s) 430
MmeI TCCRAC 1 cut(s) 433
MnlI CCTC 5 cut(s) 35, 220, 295, 426, 432
Mph1103I ATGCAT 1 cut(s) 6
MroNI GCCGGC 1 cut(s) 205
MslI CAYNNNNRTG 1 cut(s) 331
MspI CCGG 1 cut(s) 206
NaeI GCCGGC 1 cut(s) 207
NdeII GATC 3 cut(s) 255, 278, 297
NgoMIV GCCGGC 1 cut(s) 205
NlaIII CATG 3 cut(s) 8, 146, 268
NlaIV GGNNCC 2 cut(s) 23, 388
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 268
PaqCI CACCTGC 1 cut(s) 459
PdiI GCCGGC 1 cut(s) 207
PfeI GAWTC 1 cut(s) 97
PflMI CCANNNNNTGG 1 cut(s) 145
PkrI GCNGC 3 cut(s) 112, 373, 467
Psp124BI GAGCTC 1 cut(s) 430
PspN4I GGNNCC 2 cut(s) 23, 388
PspPI GGNCC 1 cut(s) 387
PsuI RGATCY 1 cut(s) 278
RsaI GTAC 2 cut(s) 23, 36
RsaNI GTAC 2 cut(s) 22, 35
RseI CAYNNNNRTG 1 cut(s) 331
SacI GAGCTC 1 cut(s) 430
SatI GCNGC 3 cut(s) 111, 372, 466
Sau3AI GATC 3 cut(s) 255, 278, 297
Sau96I GGNCC 1 cut(s) 387
SduI GDGCHC 1 cut(s) 430
SetI ASST 7 cut(s) 12, 27, 74, 346, 418, 430, 473
SfaNI GCATC 2 cut(s) 301, 458
SinI GGWCC 1 cut(s) 387
SmiMI CAYNNNNRTG 1 cut(s) 331
SsiI CCGC 2 cut(s) 111, 231
SspMI CTAG 1 cut(s) 423
SstI GAGCTC 1 cut(s) 430
TaaI ACNGT 2 cut(s) 242, 391
TaiI ACGT 1 cut(s) 12
TaqI TCGA 1 cut(s) 300
TatI WGTACW 1 cut(s) 34
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 1 cut(s) 97
TscAI CASTG 2 cut(s) 129, 275
TseI GCWGC 2 cut(s) 371, 465
TspDTI ATGAA 1 cut(s) 110
TspGWI ACGGA 1 cut(s) 449
TspRI CASTG 2 cut(s) 129, 275
Van91I CCANNNNNTGG 1 cut(s) 145
VpaK11BI GGWCC 1 cut(s) 387
XceI RCATGY 1 cut(s) 268
XcmI CCANNNNNNNNNTGG 1 cut(s) 442
XspI CTAG 1 cut(s) 423
ZraI GACGTC 1 cut(s) 10
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.