FvH4_7g12893

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000269
Physical Location & Seq
Reverse (-)
11655793 .. 11656886
1094 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g12893.t1

Sequence Viewer

Length: 852 bp
ATGCCGCCGAAGAAGAAACCCCCGGTGAAAAAACAAACGAAAAAGTCGCCGCCGAAGAAGGCCCCGACGAAGAAGCCCAAGGCTGTCCAAGAGAGGAAAAGGGCTAATGCCTCGGACGCAGATGGAAGGGCGAGGAAGAGTTCCCGATTGTTGGGTATCGATCCACCAAGCAGCAGCTCCGACACTGTCTTTGATCCCCAAGTGCGATTAGTGGAGCAAGACAAAAAGAAACTGGCAATTGAGAAGTTGTCGAATTCAGCTCTTGACTCCAGTGCCCCATGCTCTATGTTGGTTATTGCGAATGAAGCTGCGGCGGAGGCGTCAAAACCCGAAATGGCCGGTGAGGAGGCAAAATCTAGTAAGGTTGCAAAGATGAGGTCTCCACTGAAGCCCAAGCTGAAGAAAAACTCCAACAAAGGGGGGATATTTTTAAATTACCTTCATATCAGGCACAAGACCATCAATCCCCCACAGGAGATGAATAACACTTTCCGCTTGGAGTCTTCACAAGAATGGAGTATGTTTCCTCCAGAGAAAAAACAAAAGTACATTCCAGAGCCATCACATACCACAGATGATGCTTCTGATGAGTCTTTGGAACTGGTAACACTTGACAGTAGATGCTCTCCAAAGTCCTTCAGGAGTGTGGTTTCTCAGTTTAGTGATGTGAAGAAGGCAGCATGTGAAGAGCTCTGTTTTGGTGTGTTGTTGAAGATTGCTGGGACGAGACTGCGCCACTCGATGGTGCGCGCTCTTGTGGATTTGGTAGACCCCGAAAAAGGAACCATTCAGCTGCATGGGAAGTTGATTGAAATTTTTGCGTCTGATGTTGCTCAGGTGATGGGGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

284

Amino Acids

31.23

Weight (kDa)

9.68

Isoelectric Point (pI)

52.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 742
AccI GTMKAC 1 cut(s) 768
AccII CGCG 1 cut(s) 750
AciI CCGC 5 cut(s) 5, 50, 311, 314, 493
AclWI GGATC 2 cut(s) 155, 188
AcoI YGGCCR 1 cut(s) 336
AcsI RAATTY 2 cut(s) 253, 813
AcuI CTGAAG 3 cut(s) 407, 419, 622
AcyI GRCGYC 1 cut(s) 320
AfaI GTAC 1 cut(s) 548
AfiI CCNNNNNNNGG 4 cut(s) 151, 417, 742, 779
AgsI TTSAA 2 cut(s) 712, 812
AluBI AGCT 6 cut(s) 177, 260, 308, 397, 691, 793
AluI AGCT 6 cut(s) 177, 260, 308, 397, 691, 793
Alw21I GWGCWC 1 cut(s) 693
Alw26I GTCTC 2 cut(s) 384, 721
AlwI GGATC 2 cut(s) 155, 188
AoxI GGCC 2 cut(s) 60, 336
ApeKI GCWGC 5 cut(s) 171, 174, 308, 677, 793
ApoI RAATTY 2 cut(s) 253, 813
ArsI GACNNNNNNTTYG 4 cut(s) 173, 205, 362, 394
AspLEI GCGC 3 cut(s) 735, 750, 752
AspS9I GGNCC 1 cut(s) 61
AsuC2I CCSGG 1 cut(s) 23
AsuHPI GGTGA 3 cut(s) 37, 353, 850
BaeGI GKGCMC 1 cut(s) 277
BanII GRGCYC 1 cut(s) 693
BbsI GAAGAC 1 cut(s) 495
Bbv12I GWGCWC 1 cut(s) 693
BbvI GCAGC 5 cut(s) 183, 186, 295, 689, 780
BccI CCATC 5 cut(s) 116, 467, 568, 736, 835
BcnI CCSGG 1 cut(s) 23
BcoDI GTCTC 2 cut(s) 384, 721
BfaI CTAG 1 cut(s) 357
BfmI CTRYAG 1 cut(s) 848
BisI GCNGC 8 cut(s) 5, 50, 172, 175, 309, 312, 678, 794
BlsI GCNGC 8 cut(s) 6, 51, 173, 176, 310, 313, 679, 795
Bme1390I CCNGG 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 61
BmiI GGNNCC 2 cut(s) 63, 784
BmrFI CCNGG 1 cut(s) 23
BmsI GCATC 2 cut(s) 568, 611
BpiI GAAGAC 1 cut(s) 495
BpmI CTGGAG 2 cut(s) 253, 513
Bpu10I CCTNAGC 1 cut(s) 834
BpuMI CCSGG 1 cut(s) 23
Bsa29I ATCGAT 1 cut(s) 159
BsaHI GRCGYC 1 cut(s) 320
BsaI GGTCTC 1 cut(s) 384
BsaJI CCNNGG 3 cut(s) 21, 78, 111
Bsc4I CCNNNNNNNGG 4 cut(s) 151, 417, 742, 779
Bse118I RCCGGY 1 cut(s) 338
Bse1I ACTGG 3 cut(s) 237, 270, 606
BseCI ATCGAT 1 cut(s) 159
BseDI CCNNGG 3 cut(s) 21, 78, 111
BseLI CCNNNNNNNGG 4 cut(s) 151, 417, 742, 779
BseMII CTCAG 2 cut(s) 668, 848
BseNI ACTGG 3 cut(s) 237, 270, 606
BsePI GCGCGC 1 cut(s) 748
BseRI GAGGAG 1 cut(s) 359
BseSI GKGCMC 1 cut(s) 277
BseXI GCAGC 5 cut(s) 183, 186, 295, 689, 780
BseYI CCCAGC 1 cut(s) 719
Bsh1236I CGCG 1 cut(s) 750
BshFI GGCC 2 cut(s) 62, 338
BshVI ATCGAT 1 cut(s) 159
BsiHKAI GWGCWC 1 cut(s) 693
BsiSI CCGG 2 cut(s) 23, 339
BslFI GGGAC 1 cut(s) 736
BslI CCNNNNNNNGG 4 cut(s) 151, 417, 742, 779
BsmAI GTCTC 2 cut(s) 384, 721
BsmFI GGGAC 1 cut(s) 736
BsnI GGCC 2 cut(s) 62, 338
Bso31I GGTCTC 1 cut(s) 384
Bsp1286I GDGCHC 2 cut(s) 277, 693
Bsp143I GATC 2 cut(s) 160, 193
BspACI CCGC 5 cut(s) 5, 50, 311, 314, 493
BspANI GGCC 2 cut(s) 62, 338
BspCNI CTCAG 2 cut(s) 667, 847
BspDI ATCGAT 1 cut(s) 159
BspFNI CGCG 1 cut(s) 750
BspLI GGNNCC 2 cut(s) 63, 784
BspPI GGATC 2 cut(s) 155, 188
BspQI GCTCTTC 1 cut(s) 681
BspTNI GGTCTC 1 cut(s) 384
BsrFI RCCGGY 1 cut(s) 338
BsrI ACTGG 3 cut(s) 237, 270, 606
BssAI RCCGGY 1 cut(s) 338
BssECI CCNNGG 3 cut(s) 21, 78, 111
BssHII GCGCGC 1 cut(s) 748
BssMI GATC 2 cut(s) 160, 193
BssNI GRCGYC 1 cut(s) 320
BssT1I CCWWGG 1 cut(s) 78
Bst4CI ACNGT 2 cut(s) 187, 617
Bst6I CTCTTC 2 cut(s) 131, 681
BstACI GRCGYC 1 cut(s) 320
BstC8I GCNNGC 1 cut(s) 750
BstDEI CTNAG 2 cut(s) 654, 834
BstFNI CGCG 1 cut(s) 750
BstHHI GCGC 3 cut(s) 735, 750, 752
BstKTI GATC 2 cut(s) 163, 196
BstMAI GTCTC 2 cut(s) 384, 721
BstMBI GATC 2 cut(s) 160, 193
BstMWI GCNNNNNNNGC 3 cut(s) 116, 305, 317
BstNSI RCATGY 1 cut(s) 684
BstSCI CCNGG 1 cut(s) 21
BstSFI CTRYAG 1 cut(s) 848
BstSLI GKGCMC 1 cut(s) 277
BstUI CGCG 1 cut(s) 750
BstV1I GCAGC 5 cut(s) 183, 186, 295, 689, 780
BstV2I GAAGAC 1 cut(s) 495
Bsu15I ATCGAT 1 cut(s) 159
BsuRI GGCC 2 cut(s) 62, 338
BsuTUI ATCGAT 1 cut(s) 159
BtsIMutI CAGTG 3 cut(s) 183, 277, 383
Cac8I GCNNGC 1 cut(s) 750
CfoI GCGC 3 cut(s) 735, 750, 752
Cfr10I RCCGGY 1 cut(s) 338
Cfr13I GGNCC 1 cut(s) 61
ClaI ATCGAT 1 cut(s) 159
CseI GACGC 3 cut(s) 125, 309, 810
Csp6I GTAC 1 cut(s) 547
CviAII CATG 3 cut(s) 279, 681, 797
CviQI GTAC 1 cut(s) 547
DdeI CTNAG 2 cut(s) 654, 834
DpnI GATC 2 cut(s) 162, 195
DpnII GATC 2 cut(s) 160, 193
DraI TTTAAA 1 cut(s) 432
EaeI YGGCCR 1 cut(s) 336
Eam1104I CTCTTC 2 cut(s) 131, 681
EarI CTCTTC 2 cut(s) 131, 681
EciI GGCGGA 1 cut(s) 329
Ecl136II GAGCTC 1 cut(s) 691
Eco130I CCWWGG 1 cut(s) 78
Eco24I GRGCYC 1 cut(s) 693
Eco31I GGTCTC 1 cut(s) 384
Eco53kI GAGCTC 1 cut(s) 691
Eco57I CTGAAG 3 cut(s) 407, 419, 622
EcoICRI GAGCTC 1 cut(s) 691
EcoO109I RGGNCCY 1 cut(s) 61
EcoRI GAATTC 1 cut(s) 253
EcoT14I CCWWGG 1 cut(s) 78
EcoT38I GRGCYC 1 cut(s) 693
ErhI CCWWGG 1 cut(s) 78
FaeI CATG 3 cut(s) 282, 684, 800
FaiI YATR 7 cut(s) 280, 287, 444, 521, 567, 682, 798
FaqI GGGAC 1 cut(s) 736
FatI CATG 3 cut(s) 278, 680, 796
FblI GTMKAC 1 cut(s) 768
Fnu4HI GCNGC 8 cut(s) 5, 50, 172, 175, 309, 312, 678, 794
FriOI GRGCYC 1 cut(s) 693
Fsp4HI GCNGC 8 cut(s) 5, 50, 172, 175, 309, 312, 678, 794
FspBI CTAG 1 cut(s) 357
GlaI GCGC 3 cut(s) 734, 749, 751
GluI GCNGC 8 cut(s) 5, 50, 172, 175, 309, 312, 678, 794
GsaI CCCAGC 1 cut(s) 723
GsuI CTGGAG 2 cut(s) 253, 513
HaeIII GGCC 2 cut(s) 62, 338
HapII CCGG 2 cut(s) 23, 339
HgaI GACGC 3 cut(s) 125, 309, 810
HhaI GCGC 3 cut(s) 735, 750, 752
Hin1I GRCGYC 1 cut(s) 320
Hin1II CATG 3 cut(s) 282, 684, 800
Hin6I GCGC 3 cut(s) 733, 748, 750
HinP1I GCGC 3 cut(s) 733, 748, 750
HinfI GANTC 3 cut(s) 266, 500, 590
HpaII CCGG 2 cut(s) 23, 339
HphI GGTGA 3 cut(s) 37, 353, 850
Hpy166II GTNNAC 1 cut(s) 769
Hpy188I TCNGA 4 cut(s) 115, 181, 586, 826
Hpy188III TCNNGA 5 cut(s) 144, 263, 530, 554, 640
Hpy8I GTNNAC 1 cut(s) 769
Hpy99I CGWCG 1 cut(s) 70
HpyAV CCTTC 5 cut(s) 52, 120, 449, 646, 667
HpyCH4III ACNGT 2 cut(s) 187, 617
HpyCH4V TGCA 2 cut(s) 368, 796
HpyF10VI GCNNNNNNNGC 3 cut(s) 116, 305, 317
HpyF3I CTNAG 2 cut(s) 654, 834
Hsp92I GRCGYC 1 cut(s) 320
Hsp92II CATG 3 cut(s) 282, 684, 800
HspAI GCGC 3 cut(s) 733, 748, 750
Kzo9I GATC 2 cut(s) 160, 193
LguI GCTCTTC 1 cut(s) 681
LmnI GCTCC 2 cut(s) 182, 214
Lsp1109I GCAGC 5 cut(s) 183, 186, 295, 689, 780
LweI GCATC 2 cut(s) 568, 611
MaeI CTAG 1 cut(s) 357
MaeIII GTNAC 1 cut(s) 604
MalI GATC 2 cut(s) 162, 195
MboI GATC 2 cut(s) 160, 193
MfeI CAATTG 1 cut(s) 237
MhlI GDGCHC 2 cut(s) 277, 693
MluCI AATT 4 cut(s) 237, 253, 433, 813
MlyI GAGTC 3 cut(s) 260, 509, 599
MmeI TCCRAC 2 cut(s) 204, 435
MnlI CCTC 8 cut(s) 87, 121, 126, 310, 337, 340, 369, 537
MseI TTAA 1 cut(s) 431
MslI CAYNNNNRTG 1 cut(s) 511
MspA1I CMGCKG 1 cut(s) 793
MspI CCGG 2 cut(s) 23, 339
MspR9I CCNGG 1 cut(s) 23
MunI CAATTG 1 cut(s) 237
MvnI CGCG 1 cut(s) 750
MwoI GCNNNNNNNGC 3 cut(s) 116, 305, 317
NciI CCSGG 1 cut(s) 23
NdeII GATC 2 cut(s) 160, 193
NlaIII CATG 3 cut(s) 282, 684, 800
NlaIV GGNNCC 2 cut(s) 63, 784
NspI RCATGY 1 cut(s) 684
PauI GCGCGC 1 cut(s) 748
PciSI GCTCTTC 1 cut(s) 681
PflFI GACNNNGTC 1 cut(s) 185
PflMI CCANNNNNTGG 1 cut(s) 742
PkrI GCNGC 8 cut(s) 6, 51, 173, 176, 310, 313, 679, 795
PleI GAGTC 3 cut(s) 260, 508, 598
PpsI GAGTC 3 cut(s) 260, 508, 598
Psp124BI GAGCTC 1 cut(s) 693
PspFI CCCAGC 1 cut(s) 719
PspN4I GGNNCC 2 cut(s) 63, 784
PspPI GGNCC 1 cut(s) 61
PsyI GACNNNGTC 1 cut(s) 185
PteI GCGCGC 1 cut(s) 748
PvuII CAGCTG 1 cut(s) 793
RsaI GTAC 1 cut(s) 548
RsaNI GTAC 1 cut(s) 547
RseI CAYNNNNRTG 1 cut(s) 511
SacI GAGCTC 1 cut(s) 693
SapI GCTCTTC 1 cut(s) 681
SaqAI TTAA 1 cut(s) 431
SatI GCNGC 8 cut(s) 5, 50, 172, 175, 309, 312, 678, 794
Sau3AI GATC 2 cut(s) 160, 193
Sau96I GGNCC 1 cut(s) 61
SchI GAGTC 3 cut(s) 260, 509, 599
ScrFI CCNGG 1 cut(s) 23
SduI GDGCHC 2 cut(s) 277, 693
SfaNI GCATC 2 cut(s) 568, 611
SfcI CTRYAG 1 cut(s) 848
SmiMI CAYNNNNRTG 1 cut(s) 511
Sse9I AATT 4 cut(s) 237, 253, 433, 813
SsiI CCGC 5 cut(s) 5, 50, 311, 314, 493
SspMI CTAG 1 cut(s) 357
SstI GAGCTC 1 cut(s) 693
StyD4I CCNGG 1 cut(s) 21
StyI CCWWGG 1 cut(s) 78
TaaI ACNGT 2 cut(s) 187, 617
TaqI TCGA 3 cut(s) 159, 251, 740
TasI AATT 4 cut(s) 237, 253, 433, 813
TatI WGTACW 1 cut(s) 546
TauI GCSGC 3 cut(s) 7, 52, 314
Tru1I TTAA 1 cut(s) 431
Tru9I TTAA 1 cut(s) 431
TscAI CASTG 3 cut(s) 190, 277, 390
TseI GCWGC 5 cut(s) 171, 174, 308, 677, 793
TspDTI ATGAA 3 cut(s) 318, 431, 494
TspRI CASTG 3 cut(s) 190, 277, 390
Tth111I GACNNNGTC 1 cut(s) 185
Van91I CCANNNNNTGG 1 cut(s) 742
XapI RAATTY 2 cut(s) 253, 813
XceI RCATGY 1 cut(s) 684
XmiI GTMKAC 1 cut(s) 768
XspI CTAG 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.