Rorug04G0112000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000269
Physical Location & Seq
Reverse (-)
17661003 .. 17665886
4884 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0112000.1

Sequence Viewer

Length: 429 bp
ATGGCAATGGGATTTCCAACTATGTTCTTCCCAGTTTTGTTTGCAATCCCTCGAGTTCTTCCCACTTCTGGTGGCTTGTTTGGAGAAGTTCCCCAAACATGTACAAGTGTCTTGTTTGGAGAAGTTCCCCAAGGATATTTCAAAGCATCTTGTCCTGCTTCTATTCCCGATACTTACTACTGCTTGCATTTCCTATATGTTCCATTTGTGGAGAATGTCCTAAGACATAGAAAGTTGGCATCCTATATTAGTAGATTTACTGTCAAGTTGTTTATATTTAAGTCATATGTCAAGTTTAGAATGGGCCTCTTTGCAAGGACTCAAATGCAAGGAATATTCCTTGCATCTGGGTTAATGCAAGGAATTTCTAGTTTTTTACAAGGAAAAAATTCCTTGCAAAAGGCCATTTTTCTTGTAGTGATAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.96

Weight (kDa)

9.84

Isoelectric Point (pI)

32.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 363, 388
AfaI GTAC 1 cut(s) 103
AfiI CCNNNNNNNGG 1 cut(s) 68
AflIII ACRYGT 1 cut(s) 98
AgsI TTSAA 1 cut(s) 142
Ama87I CYCGRG 1 cut(s) 51
AoxI GGCC 2 cut(s) 304, 402
ApoI RAATTY 2 cut(s) 363, 388
Asp700I GAANNNNTTC 1 cut(s) 388
AspS9I GGNCC 1 cut(s) 304
AvaI CYCGRG 1 cut(s) 51
BfaI CTAG 1 cut(s) 369
BmeT110I CYCGRG 1 cut(s) 51
BmgT120I GGNCC 1 cut(s) 304
BmrI ACTGGG 1 cut(s) 26
BmsI GCATC 3 cut(s) 155, 248, 353
BmuI ACTGGG 1 cut(s) 26
BsaJI CCNNGG 1 cut(s) 130
Bsc4I CCNNNNNNNGG 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 32
Bse3DI GCAATG 1 cut(s) 12
BseDI CCNNGG 1 cut(s) 130
BseGI GGATG 1 cut(s) 239
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMI GCAATG 1 cut(s) 12
BseNI ACTGG 1 cut(s) 32
BshFI GGCC 2 cut(s) 306, 404
BsiHKCI CYCGRG 1 cut(s) 51
BslI CCNNNNNNNGG 1 cut(s) 68
BsnI GGCC 2 cut(s) 306, 404
BsoBI CYCGRG 1 cut(s) 51
Bsp1407I TGTACA 1 cut(s) 101
BspANI GGCC 2 cut(s) 306, 404
BsrDI GCAATG 1 cut(s) 12
BsrGI TGTACA 1 cut(s) 101
BsrI ACTGG 1 cut(s) 32
BssECI CCNNGG 1 cut(s) 130
BssT1I CCWWGG 1 cut(s) 130
Bst4CI ACNGT 1 cut(s) 262
BstAUI TGTACA 1 cut(s) 101
BstC8I GCNNGC 1 cut(s) 185
BstDEI CTNAG 1 cut(s) 221
BstF5I GGATG 1 cut(s) 239
BstNSI RCATGY 1 cut(s) 102
BsuRI GGCC 2 cut(s) 306, 404
BtsCI GGATG 1 cut(s) 239
Cac8I GCNNGC 1 cut(s) 185
Cfr13I GGNCC 1 cut(s) 304
Csp6I GTAC 1 cut(s) 102
CviAII CATG 1 cut(s) 99
CviJI RGCY 3 cut(s) 75, 306, 404
CviKI_1 RGCY 3 cut(s) 75, 306, 404
CviQI GTAC 1 cut(s) 102
DdeI CTNAG 1 cut(s) 221
Eco130I CCWWGG 1 cut(s) 130
Eco88I CYCGRG 1 cut(s) 51
EcoT14I CCWWGG 1 cut(s) 130
ErhI CCWWGG 1 cut(s) 130
FaeI CATG 1 cut(s) 102
FaiI YATR 9 cut(s) 23, 100, 196, 198, 228, 246, 275, 286, 288
FatI CATG 1 cut(s) 98
FauNDI CATATG 1 cut(s) 286
FokI GGATG 1 cut(s) 226
FspBI CTAG 1 cut(s) 369
HaeIII GGCC 2 cut(s) 306, 404
Hin1II CATG 1 cut(s) 102
HinfI GANTC 1 cut(s) 319
Hpy188III TCNNGA 1 cut(s) 167
HpyCH4III ACNGT 1 cut(s) 262
HpyCH4V TGCA 7 cut(s) 44, 187, 314, 328, 344, 358, 397
HpyF3I CTNAG 1 cut(s) 221
Hsp92II CATG 1 cut(s) 102
LpnPI CCDG 4 cut(s) 45, 54, 168, 333
LweI GCATC 3 cut(s) 155, 248, 353
MaeI CTAG 1 cut(s) 369
MboII GAAGA 2 cut(s) 19, 50
MluCI AATT 2 cut(s) 363, 388
MlyI GAGTC 1 cut(s) 313
MmeI TCCRAC 1 cut(s) 41
MnlI CCTC 2 cut(s) 60, 317
MroXI GAANNNNTTC 1 cut(s) 388
MseI TTAA 2 cut(s) 279, 353
NdeI CATATG 1 cut(s) 286
NlaIII CATG 1 cut(s) 102
NspI RCATGY 1 cut(s) 102
PaeR7I CTCGAG 1 cut(s) 51
PciI ACATGT 1 cut(s) 98
PdmI GAANNNNTTC 1 cut(s) 388
PleI GAGTC 1 cut(s) 313
PpsI GAGTC 1 cut(s) 313
PscI ACATGT 1 cut(s) 98
PspPI GGNCC 1 cut(s) 304
PspXI VCTCGAGB 1 cut(s) 51
RsaI GTAC 1 cut(s) 103
RsaNI GTAC 1 cut(s) 102
SaqAI TTAA 2 cut(s) 279, 353
Sau96I GGNCC 1 cut(s) 304
SchI GAGTC 1 cut(s) 313
SfaNI GCATC 3 cut(s) 155, 248, 353
Sfr274I CTCGAG 1 cut(s) 51
SlaI CTCGAG 1 cut(s) 51
SmlI CTYRAG 1 cut(s) 51
SmoI CTYRAG 1 cut(s) 51
Sse9I AATT 2 cut(s) 363, 388
SspI AATATT 1 cut(s) 336
SspMI CTAG 1 cut(s) 369
StyI CCWWGG 1 cut(s) 130
TaaI ACNGT 1 cut(s) 262
TaqI TCGA 1 cut(s) 52
TasI AATT 2 cut(s) 363, 388
TatI WGTACW 1 cut(s) 101
Tru1I TTAA 2 cut(s) 279, 353
Tru9I TTAA 2 cut(s) 279, 353
XapI RAATTY 2 cut(s) 363, 388
XceI RCATGY 1 cut(s) 102
XhoI CTCGAG 1 cut(s) 51
XmnI GAANNNNTTC 1 cut(s) 388
XspI CTAG 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.