Rh6AG088600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000269
Physical Location & Seq
Reverse (-)
13213630 .. 13213977
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG088600.1

Sequence Viewer

Length: 348 bp
ATGGGCAAACTACTCAAATGGGTGAACAAGCAAGGTGGTTTGTTGGATGAAAATGTTCTTGTGGCAAAGGTTGGCGATCATGTTAGTAGTGGAGATCAGGCCAAAGCATATGGGGTGATTAAGAAAGAAATTTCTGACTTGGCTGCTAAAATGAATGGGCTGGAAAATAATATGTGTAATCTGAGAGATGATATGATGGGAAAGATGGACAAAGTCTTGAGTATGCTGAACACTCTGACTTCACAAAATGTGAATGTCAATAAGAACCTTCAAACTGATGGCTTAGCAGAGAAAGTAAGCCCCAAGAAAGTTTCAAAAAAGAAAGATGGAGAGCAACAGGAGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.59

Weight (kDa)

8.97

Isoelectric Point (pI)

28.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 129
AgsI TTSAA 2 cut(s) 272, 315
AoxI GGCC 1 cut(s) 99
ApeKI GCWGC 1 cut(s) 143
ApoI RAATTY 1 cut(s) 129
Asp700I GAANNNNTTC 1 cut(s) 54
AsuHPI GGTGA 2 cut(s) 34, 127
BbvI GCAGC 1 cut(s) 130
BccI CCATC 4 cut(s) 190, 199, 272, 320
BisI GCNGC 1 cut(s) 144
BlpI GCTNAGC 1 cut(s) 283
BlsI GCNGC 1 cut(s) 145
Bpu1102I GCTNAGC 1 cut(s) 283
BpuEI CTTGAG 1 cut(s) 238
BseGI GGATG 1 cut(s) 52
BseMII CTCAG 1 cut(s) 173
BseXI GCAGC 1 cut(s) 130
BshFI GGCC 1 cut(s) 101
BsnI GGCC 1 cut(s) 101
Bsp143I GATC 2 cut(s) 76, 94
Bsp1720I GCTNAGC 1 cut(s) 283
BspANI GGCC 1 cut(s) 101
BspCNI CTCAG 1 cut(s) 174
BssMI GATC 2 cut(s) 76, 94
BstDEI CTNAG 2 cut(s) 182, 283
BstF5I GGATG 1 cut(s) 52
BstKTI GATC 2 cut(s) 79, 97
BstMBI GATC 2 cut(s) 76, 94
BstV1I GCAGC 1 cut(s) 130
BsuRI GGCC 1 cut(s) 101
BtsCI GGATG 1 cut(s) 52
CspCI CAANNNNNGTGG 2 cut(s) 16, 51
CviAII CATG 1 cut(s) 80
CviJI RGCY 5 cut(s) 101, 143, 160, 282, 300
CviKI_1 RGCY 5 cut(s) 101, 143, 160, 282, 300
DdeI CTNAG 2 cut(s) 182, 283
DpnI GATC 2 cut(s) 78, 96
DpnII GATC 2 cut(s) 76, 94
FaeI CATG 1 cut(s) 83
FaiI YATR 7 cut(s) 81, 109, 111, 173, 194, 224, 346
FatI CATG 1 cut(s) 79
FauNDI CATATG 1 cut(s) 109
Fnu4HI GCNGC 1 cut(s) 144
FokI GGATG 1 cut(s) 59
Fsp4HI GCNGC 1 cut(s) 144
GluI GCNGC 1 cut(s) 144
HaeIII GGCC 1 cut(s) 101
Hin1II CATG 1 cut(s) 83
HphI GGTGA 2 cut(s) 34, 127
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 3 cut(s) 136, 183, 237
Hpy188III TCNNGA 1 cut(s) 217
Hpy8I GTNNAC 1 cut(s) 25
HpyAV CCTTC 1 cut(s) 278
HpyF3I CTNAG 2 cut(s) 182, 283
Hsp92II CATG 1 cut(s) 83
Kzo9I GATC 2 cut(s) 76, 94
LpnPI CCDG 3 cut(s) 83, 146, 323
Lsp1109I GCAGC 1 cut(s) 130
MalI GATC 2 cut(s) 78, 96
MboI GATC 2 cut(s) 76, 94
MluCI AATT 1 cut(s) 129
MmeI TCCRAC 1 cut(s) 24
MnlI CCTC 1 cut(s) 334
MroXI GAANNNNTTC 1 cut(s) 54
MseI TTAA 1 cut(s) 120
NdeI CATATG 1 cut(s) 109
NdeII GATC 2 cut(s) 76, 94
NlaIII CATG 1 cut(s) 83
PdmI GAANNNNTTC 1 cut(s) 54
PflFI GACNNNGTC 1 cut(s) 212
PkrI GCNGC 1 cut(s) 145
PsyI GACNNNGTC 1 cut(s) 212
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 1 cut(s) 144
Sau3AI GATC 2 cut(s) 76, 94
SetI ASST 4 cut(s) 37, 72, 270, 345
SgeI CNNG 9 cut(s) 40, 44, 71, 92, 110, 151, 173, 229, 316
SmlI CTYRAG 1 cut(s) 217
SmoI CTYRAG 1 cut(s) 217
Sse9I AATT 1 cut(s) 129
TasI AATT 1 cut(s) 129
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TseI GCWGC 1 cut(s) 143
TspDTI ATGAA 2 cut(s) 63, 167
Tth111I GACNNNGTC 1 cut(s) 212
XapI RAATTY 1 cut(s) 129
XmnI GAANNNNTTC 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.