Rmu_sc0000308.1_g000017

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000308.1
OG0000269
Physical Location & Seq
Reverse (-)
79129 .. 81018
1890 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000308.1_g000017.1.cds

Sequence Viewer

Length: 972 bp
atgtctgacttggctgctaaagtgaatgggttggaaaataatatatgcaatctgagagatgatatgatgggaaagatggacaaagtcttgagtatgctaaacactctgactgcacaaaatgtgaatgtcaatcagaaccttcaaactgatggcttagcagaaaaagtaagccccaagaaagtttcaaaaaagaaagctggagagcaacaggaggtgttacaggtacatggggaagacttgcaaacaaaaaagaagacctccttgatttgcctatctgactcaacatttgtagttagcccactgaaaagtatgaagaaagttgatgccaaccccacgaccaagagtaacatagagaagattggtaacttcaaagtcaagggagatcaggaggaggttgacaaaggagtgctcaggtttgtttataatgtgtcagctgaagagaaggagaccattgtggatagtgaaagtttcttcactagtcgaaaagcagtttggtcacataaacctaacggaaagatgaaaagttacaatgacagagacatgtgtggagattcggctatggcaatttcgaagggtttgggtgtaaagagatttgagaatggcatccctgaatgcgagaagttgcaaacactggacattatctaccaccatgtggagttcaaagtcaagaatgttgtgaagaagtttgctaacttccatgtattcgagccggctcaatgccctaaacaagagggcggttctgactgtggggtgtatgtgatcaaacacatgcactgttatggatctgagtggtggcatcaggaagccatcaaaactcggccaccaccaatattttctacacctaagactgcacaaaggaaaactaaagcagcaccgaagaaagggaccgtgaagaacccaatcgtccaaccacctcgcactagagctcaatccaagaggggtgtggcatcaaatgtccatcgtagcaggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

323

Amino Acids

36.16

Weight (kDa)

9.52

Isoelectric Point (pI)

38.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 423
AarI CACCTGC 1 cut(s) 957
Acc36I ACCTGC 1 cut(s) 957
AccB7I CCANNNNNTGG 1 cut(s) 652
AciI CCGC 1 cut(s) 735
AclWI GGATC 1 cut(s) 790
AcoI YGGCCR 1 cut(s) 818
AcuI CTGAAG 1 cut(s) 456
AdeI CACNNNGTG 1 cut(s) 652
AfaI GTAC 1 cut(s) 225
AfiI CCNNNNNNNGG 2 cut(s) 652, 881
AflIII ACRYGT 1 cut(s) 540
AgsI TTSAA 4 cut(s) 143, 186, 370, 661
AhlI ACTAGT 1 cut(s) 476
AjuI GAANNNNNNNTTGG 2 cut(s) 475, 507
AluBI AGCT 3 cut(s) 197, 434, 926
AluI AGCT 3 cut(s) 197, 434, 926
Alw21I GWGCWC 2 cut(s) 411, 928
Alw26I GTCTC 2 cut(s) 440, 531
AlwI GGATC 1 cut(s) 790
AoxI GGCC 1 cut(s) 818
ApeKI GCWGC 2 cut(s) 14, 869
ArsI GACNNNNNNTTYG 2 cut(s) 269, 301
AspS9I GGNCC 1 cut(s) 885
AsuII TTCGAA 1 cut(s) 569
AvaII GGWCC 1 cut(s) 885
BanII GRGCYC 1 cut(s) 928
BbsI GAAGAC 2 cut(s) 240, 260
Bbv12I GWGCWC 2 cut(s) 411, 928
BbvI GCAGC 1 cut(s) 881
BccI CCATC 5 cut(s) 61, 70, 143, 815, 966
BclI TGATCA 1 cut(s) 759
BcoDI GTCTC 2 cut(s) 440, 531
BcuI ACTAGT 1 cut(s) 476
BfaI CTAG 2 cut(s) 477, 921
BfuAI ACCTGC 1 cut(s) 957
BisI GCNGC 2 cut(s) 15, 870
BlpI GCTNAGC 1 cut(s) 154
BlsI GCNGC 2 cut(s) 16, 871
Bme18I GGWCC 1 cut(s) 885
BmgT120I GGNCC 1 cut(s) 885
BmiI GGNNCC 1 cut(s) 886
BmsI GCATC 4 cut(s) 313, 612, 805, 956
BpiI GAAGAC 2 cut(s) 240, 260
BpmI CTGGAG 1 cut(s) 219
Bpu10I CCTNAGC 1 cut(s) 410
Bpu1102I GCTNAGC 1 cut(s) 154
Bpu14I TTCGAA 1 cut(s) 569
BpuEI CTTGAG 1 cut(s) 109
BsaI GGTCTC 1 cut(s) 440
Bsc4I CCNNNNNNNGG 2 cut(s) 652, 881
Bse118I RCCGGY 1 cut(s) 709
Bse1I ACTGG 1 cut(s) 636
BseGI GGATG 1 cut(s) 603
BseLI CCNNNNNNNGG 2 cut(s) 652, 881
BseMII CTCAG 3 cut(s) 44, 424, 777
BseNI ACTGG 1 cut(s) 636
BseRI GAGGAG 1 cut(s) 404
BseXI GCAGC 1 cut(s) 881
BsgI GTGCAG 2 cut(s) 96, 834
BshFI GGCC 1 cut(s) 820
BsiHKAI GWGCWC 2 cut(s) 411, 928
BsiSI CCGG 1 cut(s) 710
BslFI GGGAC 1 cut(s) 898
BslI CCNNNNNNNGG 2 cut(s) 652, 881
BsmAI GTCTC 2 cut(s) 440, 531
BsmFI GGGAC 1 cut(s) 898
BsmI GAATGC 1 cut(s) 617
BsnI GGCC 1 cut(s) 820
Bso31I GGTCTC 1 cut(s) 440
Bsp119I TTCGAA 1 cut(s) 569
Bsp1286I GDGCHC 2 cut(s) 411, 928
Bsp143I GATC 3 cut(s) 382, 759, 782
Bsp1720I GCTNAGC 1 cut(s) 154
BspACI CCGC 1 cut(s) 735
BspANI GGCC 1 cut(s) 820
BspCNI CTCAG 3 cut(s) 45, 423, 778
BspLI GGNNCC 1 cut(s) 886
BspMI ACCTGC 1 cut(s) 957
BspPI GGATC 1 cut(s) 790
BspT104I TTCGAA 1 cut(s) 569
BspTNI GGTCTC 1 cut(s) 440
BsrFI RCCGGY 1 cut(s) 709
BsrI ACTGG 1 cut(s) 636
BssAI RCCGGY 1 cut(s) 709
BssMI GATC 3 cut(s) 382, 759, 782
Bst4CI ACNGT 3 cut(s) 746, 776, 889
Bst6I CTCTTC 1 cut(s) 432
BstBI TTCGAA 1 cut(s) 569
BstC8I GCNNGC 1 cut(s) 711
BstDEI CTNAG 5 cut(s) 53, 154, 410, 786, 843
BstF5I GGATG 1 cut(s) 603
BstKTI GATC 3 cut(s) 385, 762, 785
BstMAI GTCTC 2 cut(s) 440, 531
BstMBI GATC 3 cut(s) 382, 759, 782
BstNSI RCATGY 2 cut(s) 544, 772
BstV1I GCAGC 1 cut(s) 881
BstV2I GAAGAC 2 cut(s) 240, 260
BstX2I RGATCY 1 cut(s) 782
BstYI RGATCY 1 cut(s) 782
BsuRI GGCC 1 cut(s) 820
BtsCI GGATG 1 cut(s) 603
BtsIMutI CAGTG 3 cut(s) 299, 629, 772
BveI ACCTGC 1 cut(s) 957
Cac8I GCNNGC 1 cut(s) 711
Cfr10I RCCGGY 1 cut(s) 709
Cfr13I GGNCC 1 cut(s) 885
Csp6I GTAC 1 cut(s) 224
CviAII CATG 5 cut(s) 227, 541, 650, 698, 769
CviQI GTAC 1 cut(s) 224
DdeI CTNAG 5 cut(s) 53, 154, 410, 786, 843
DpnI GATC 3 cut(s) 384, 761, 784
DpnII GATC 3 cut(s) 382, 759, 782
DraIII CACNNNGTG 1 cut(s) 652
EaeI YGGCCR 1 cut(s) 818
Eam1104I CTCTTC 1 cut(s) 432
EarI CTCTTC 1 cut(s) 432
Ecl136II GAGCTC 1 cut(s) 926
Eco24I GRGCYC 1 cut(s) 928
Eco31I GGTCTC 1 cut(s) 440
Eco47I GGWCC 1 cut(s) 885
Eco53kI GAGCTC 1 cut(s) 926
Eco57I CTGAAG 1 cut(s) 456
EcoICRI GAGCTC 1 cut(s) 926
EcoT38I GRGCYC 1 cut(s) 928
FaeI CATG 5 cut(s) 230, 544, 653, 701, 772
FalI AAGNNNNNCTT 2 cut(s) 245, 277
FaqI GGGAC 1 cut(s) 898
FatI CATG 5 cut(s) 226, 540, 649, 697, 768
FbaI TGATCA 1 cut(s) 759
Fnu4HI GCNGC 2 cut(s) 15, 870
FokI GGATG 1 cut(s) 590
FriOI GRGCYC 1 cut(s) 928
Fsp4HI GCNGC 2 cut(s) 15, 870
FspBI CTAG 2 cut(s) 477, 921
GluI GCNGC 2 cut(s) 15, 870
GsuI CTGGAG 1 cut(s) 219
HaeIII GGCC 1 cut(s) 820
HapII CCGG 1 cut(s) 710
Hin1II CATG 5 cut(s) 230, 544, 653, 701, 772
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HinfI GANTC 2 cut(s) 278, 551
HpaII CCGG 1 cut(s) 710
Hpy166II GTNNAC 1 cut(s) 397
Hpy188I TCNGA 7 cut(s) 7, 54, 108, 135, 277, 742, 787
Hpy188III TCNNGA 4 cut(s) 88, 386, 667, 800
Hpy8I GTNNAC 1 cut(s) 397
HpyAV CCTTC 3 cut(s) 149, 436, 565
HpyCH4III ACNGT 3 cut(s) 746, 776, 889
HpyCH4V TGCA 6 cut(s) 48, 113, 241, 625, 772, 851
HpyF3I CTNAG 5 cut(s) 53, 154, 410, 786, 843
Hsp92II CATG 5 cut(s) 230, 544, 653, 701, 772
KroI GCCGGC 1 cut(s) 709
KroNI GCCGGC 1 cut(s) 711
Ksp22I TGATCA 1 cut(s) 759
Kzo9I GATC 3 cut(s) 382, 759, 782
Lsp1109I GCAGC 1 cut(s) 881
LweI GCATC 4 cut(s) 313, 612, 805, 956
MaeI CTAG 2 cut(s) 477, 921
MaeIII GTNAC 5 cut(s) 216, 344, 362, 495, 524
MalI GATC 3 cut(s) 384, 761, 784
MboI GATC 3 cut(s) 382, 759, 782
MboII GAAGA 9 cut(s) 245, 265, 325, 367, 449, 463, 691, 889, 904
MflI RGATCY 1 cut(s) 782
MhlI GDGCHC 2 cut(s) 411, 928
MluCI AATT 1 cut(s) 564
MlyI GAGTC 1 cut(s) 272
MmeI TCCRAC 2 cut(s) 12, 931
MnlI CCTC 7 cut(s) 205, 268, 382, 385, 724, 924, 930
MroNI GCCGGC 1 cut(s) 709
MslI CAYNNNNRTG 1 cut(s) 777
MspA1I CMGCKG 1 cut(s) 434
MspI CCGG 1 cut(s) 710
Mva1269I GAATGC 1 cut(s) 617
NaeI GCCGGC 1 cut(s) 711
NdeII GATC 3 cut(s) 382, 759, 782
NgoMIV GCCGGC 1 cut(s) 709
NlaIII CATG 5 cut(s) 230, 544, 653, 701, 772
NlaIV GGNNCC 1 cut(s) 886
NmeAIII GCCGAG 1 cut(s) 796
NmuCI GTSAC 1 cut(s) 495
NspI RCATGY 2 cut(s) 544, 772
NspV TTCGAA 1 cut(s) 569
PaqCI CACCTGC 1 cut(s) 957
PciI ACATGT 1 cut(s) 540
PctI GAATGC 1 cut(s) 617
PdiI GCCGGC 1 cut(s) 711
PfeI GAWTC 1 cut(s) 551
PflFI GACNNNGTC 1 cut(s) 83
PflMI CCANNNNNTGG 1 cut(s) 652
PkrI GCNGC 2 cut(s) 16, 871
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
PscI ACATGT 1 cut(s) 540
PsiI TTATAA 1 cut(s) 423
Psp124BI GAGCTC 1 cut(s) 928
PspN4I GGNNCC 1 cut(s) 886
PspPI GGNCC 1 cut(s) 885
PsuI RGATCY 1 cut(s) 782
PsyI GACNNNGTC 1 cut(s) 83
PvuII CAGCTG 1 cut(s) 434
RsaI GTAC 1 cut(s) 225
RsaNI GTAC 1 cut(s) 224
RseI CAYNNNNRTG 1 cut(s) 777
SacI GAGCTC 1 cut(s) 928
SatI GCNGC 2 cut(s) 15, 870
Sau3AI GATC 3 cut(s) 382, 759, 782
Sau96I GGNCC 1 cut(s) 885
SchI GAGTC 1 cut(s) 272
SduI GDGCHC 2 cut(s) 411, 928
SfaNI GCATC 4 cut(s) 313, 612, 805, 956
SfuI TTCGAA 1 cut(s) 569
SinI GGWCC 1 cut(s) 885
SmiMI CAYNNNNRTG 1 cut(s) 777
SmlI CTYRAG 1 cut(s) 88
SmoI CTYRAG 1 cut(s) 88
SpeI ACTAGT 1 cut(s) 476
Sse9I AATT 1 cut(s) 564
SsiI CCGC 1 cut(s) 735
SspI AATATT 1 cut(s) 831
SspMI CTAG 2 cut(s) 477, 921
SstI GAGCTC 1 cut(s) 928
TaaI ACNGT 3 cut(s) 746, 776, 889
TaqI TCGA 3 cut(s) 481, 569, 705
TasI AATT 1 cut(s) 564
TfiI GAWTC 1 cut(s) 551
TscAI CASTG 3 cut(s) 306, 636, 779
TseFI GTSAC 1 cut(s) 495
TseI GCWGC 2 cut(s) 14, 869
Tsp45I GTSAC 1 cut(s) 495
TspDTI ATGAA 2 cut(s) 326, 533
TspGWI ACGGA 1 cut(s) 525
TspRI CASTG 3 cut(s) 306, 636, 779
Tth111I GACNNNGTC 1 cut(s) 83
Van91I CCANNNNNTGG 1 cut(s) 652
VpaK11BI GGWCC 1 cut(s) 885
XceI RCATGY 2 cut(s) 544, 772
XcmI CCANNNNNNNNNTGG 1 cut(s) 940
XspI CTAG 2 cut(s) 477, 921
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.