Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005399.1

Orthogroup ID

OG0000269

Physical Location & Seq

Genomic Coordinates Reverse (-)

57466 .. 58242

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005399.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

atgtgtggagattcggcaagggtagtttcgaagggtttgggtgtaaagagatttgagaatggcatacctgagtgtgagaagttgcaaacactggacattatctaccactatgtggagttcaaagtcaagaatgttgtgaagaagtttgctgacttccagttattcaagccggctgaatgccctaaacaagagggcggttctgactgtggggtgtatgtgatcaaacacaggcagtgttatggatctgagtggtggcatcagtttaaatcagaagaggtacgcatggacttatccattgaattggtaaggaacaaattcaataagtgctggaaatggatcgatgaagccatcaaaactcggccaccaccaatatgttctaaaccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048519 GO:0050789 GO:0050896 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04931 map04931

Pfam Domains

Protein Families

PTPA

Protein Analysis

128

Amino Acids

14.94

Weight (kDa)

8.82

Isoelectric Point (pI)

44.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000269)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis	RchiOBHm_Chr7g0204351
rosa_laevigata	RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora	Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii	Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa	Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha	Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	112
AciI	CCGC	1 cut(s)	195
AclWI	GGATC	2 cut(s)	250, 344
AcoI	YGGCCR	1 cut(s)	359
AcsI	RAATTY	1 cut(s)	314
AdeI	CACNNNGTG	1 cut(s)	112
AfaI	GTAC	1 cut(s)	279
AfiI	CCNNNNNNNGG	1 cut(s)	112
AgsI	TTSAA	4 cut(s)	121, 166, 299, 319
AlwI	GGATC	2 cut(s)	250, 344
AoxI	GGCC	1 cut(s)	359
ApoI	RAATTY	1 cut(s)	314
Asp700I	GAANNNNTTC	1 cut(s)	314
AsuII	TTCGAA	1 cut(s)	29
BccI	CCATC	1 cut(s)	356
BclI	TGATCA	1 cut(s)	219
BmsI	GCATC	1 cut(s)	265
Bpu14I	TTCGAA	1 cut(s)	29
Bsa29I	ATCGAT	1 cut(s)	339
Bsc4I	CCNNNNNNNGG	1 cut(s)	112
Bse118I	RCCGGY	1 cut(s)	169
Bse1I	ACTGG	2 cut(s)	96, 157
BseCI	ATCGAT	1 cut(s)	339
BseLI	CCNNNNNNNGG	1 cut(s)	112
BseMII	CTCAG	2 cut(s)	60, 237
BseNI	ACTGG	2 cut(s)	96, 157
BshFI	GGCC	1 cut(s)	361
BshVI	ATCGAT	1 cut(s)	339
BsiSI	CCGG	1 cut(s)	170
BslI	CCNNNNNNNGG	1 cut(s)	112
BsmI	GAATGC	1 cut(s)	182
BsnI	GGCC	1 cut(s)	361
Bsp119I	TTCGAA	1 cut(s)	29
Bsp143I	GATC	3 cut(s)	219, 242, 336
BspACI	CCGC	1 cut(s)	195
BspANI	GGCC	1 cut(s)	361
BspCNI	CTCAG	2 cut(s)	61, 238
BspDI	ATCGAT	1 cut(s)	339
BspPI	GGATC	2 cut(s)	250, 344
BspT104I	TTCGAA	1 cut(s)	29
BsrFI	RCCGGY	1 cut(s)	169
BsrI	ACTGG	2 cut(s)	96, 157
BssAI	RCCGGY	1 cut(s)	169
BssMI	GATC	3 cut(s)	219, 242, 336
Bst4CI	ACNGT	1 cut(s)	206
Bst6I	CTCTTC	1 cut(s)	267
BstBI	TTCGAA	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	3 cut(s)	69, 246, 384
BstKTI	GATC	3 cut(s)	222, 245, 339
BstMBI	GATC	3 cut(s)	219, 242, 336
BstX2I	RGATCY	1 cut(s)	242
BstXI	CCANNNNNNTGG	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	242
Bsu15I	ATCGAT	1 cut(s)	339
BsuRI	GGCC	1 cut(s)	361
BsuTUI	ATCGAT	1 cut(s)	339
BtsI	GCAGTG	1 cut(s)	239
BtsIMutI	CAGTG	2 cut(s)	89, 239
Cac8I	GCNNGC	1 cut(s)	171
Cfr10I	RCCGGY	1 cut(s)	169
ClaI	ATCGAT	1 cut(s)	339
Csp6I	GTAC	1 cut(s)	278
CviAII	CATG	1 cut(s)	283
CviJI	RGCY	4 cut(s)	169, 173, 347, 361
CviKI_1	RGCY	4 cut(s)	169, 173, 347, 361
CviQI	GTAC	1 cut(s)	278
DdeI	CTNAG	3 cut(s)	69, 246, 384
DpnI	GATC	3 cut(s)	221, 244, 338
DpnII	GATC	3 cut(s)	219, 242, 336
DraI	TTTAAA	1 cut(s)	265
DraIII	CACNNNGTG	1 cut(s)	112
EaeI	YGGCCR	1 cut(s)	359
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
FaeI	CATG	1 cut(s)	286
FaiI	YATR	6 cut(s)	65, 111, 216, 240, 284, 373
FatI	CATG	1 cut(s)	282
FbaI	TGATCA	1 cut(s)	219
HaeIII	GGCC	1 cut(s)	361
HapII	CCGG	1 cut(s)	170
Hin1II	CATG	1 cut(s)	286
HinfI	GANTC	1 cut(s)	11
HpaII	CCGG	1 cut(s)	170
Hpy188I	TCNGA	3 cut(s)	202, 247, 271
Hpy188III	TCNNGA	1 cut(s)	127
HpyAV	CCTTC	1 cut(s)	25
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4V	TGCA	1 cut(s)	85
HpyF3I	CTNAG	3 cut(s)	69, 246, 384
Hsp92II	CATG	1 cut(s)	286
KroI	GCCGGC	1 cut(s)	169
KroNI	GCCGGC	1 cut(s)	171
Ksp22I	TGATCA	1 cut(s)	219
Kzo9I	GATC	3 cut(s)	219, 242, 336
LpnPI	CCDG	6 cut(s)	77, 81, 170, 183, 214, 313
LweI	GCATC	1 cut(s)	265
MalI	GATC	3 cut(s)	221, 244, 338
MboI	GATC	3 cut(s)	219, 242, 336
MboII	GAAGA	2 cut(s)	151, 284
MflI	RGATCY	1 cut(s)	242
MluCI	AATT	2 cut(s)	299, 314
MnlI	CCTC	2 cut(s)	184, 268
MroNI	GCCGGC	1 cut(s)	169
MroXI	GAANNNNTTC	1 cut(s)	314
MseI	TTAA	1 cut(s)	264
MslI	CAYNNNNRTG	1 cut(s)	370
MspI	CCGG	1 cut(s)	170
Mva1269I	GAATGC	1 cut(s)	182
NaeI	GCCGGC	1 cut(s)	171
NdeII	GATC	3 cut(s)	219, 242, 336
NgoMIV	GCCGGC	1 cut(s)	169
NlaIII	CATG	1 cut(s)	286
NmeAIII	GCCGAG	1 cut(s)	337
NspV	TTCGAA	1 cut(s)	29
PctI	GAATGC	1 cut(s)	182
PdiI	GCCGGC	1 cut(s)	171
PdmI	GAANNNNTTC	1 cut(s)	314
PfeI	GAWTC	1 cut(s)	11
PflMI	CCANNNNNTGG	1 cut(s)	112
PsuI	RGATCY	1 cut(s)	242
RsaI	GTAC	1 cut(s)	279
RsaNI	GTAC	1 cut(s)	278
RseI	CAYNNNNRTG	1 cut(s)	370
SaqAI	TTAA	1 cut(s)	264
Sau3AI	GATC	3 cut(s)	219, 242, 336
SetI	ASST	3 cut(s)	70, 279, 385
SfaNI	GCATC	1 cut(s)	265
SfuI	TTCGAA	1 cut(s)	29
SmiMI	CAYNNNNRTG	1 cut(s)	370
Sse9I	AATT	2 cut(s)	299, 314
SsiI	CCGC	1 cut(s)	195
TaaI	ACNGT	1 cut(s)	206
TaqI	TCGA	2 cut(s)	29, 339
TasI	AATT	2 cut(s)	299, 314
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	2 cut(s)	96, 239
TspDTI	ATGAA	1 cut(s)	357
TspRI	CASTG	2 cut(s)	96, 239
Van91I	CCANNNNNTGG	1 cut(s)	112
XapI	RAATTY	1 cut(s)	314
XmnI	GAANNNNTTC	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.