Rroxscaffold_1G00054020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000269
Physical Location & Seq
Forward (+)
75329758 .. 75330685
928 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00054020.1

Sequence Viewer

Length: 318 bp
ATGAACCGGCAACCGCTCAAATGGGTGAACAAGCAAGGTGGTTTGCTGGATGAAAATGTTCTTGTGGCAAAGGTGTTACGGGTACATGGGGAAGACTTGCAACCAAAAAAGAAGACCTCCATGATTTGCCTATCCGACTCGACATCCGTAGTCATCCCACTAAAAAGTATGAAAAAAGTTGATGCCAACCCCACGACCAAGAGTAACATAGAGAAGATTGGTAACTTTAAAGTCAAGGGAGATCGGGAGGAGGCCGACAAAGGAGTGCTCGGGTTTGTTTATGATGTGTCACCAAGAGAAGGAGACCATTGTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.61

Weight (kDa)

9.14

Isoelectric Point (pI)

30.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 16
AciI CCGC 1 cut(s) 14
AfaI GTAC 1 cut(s) 84
AfiI CCNNNNNNNGG 1 cut(s) 299
Alw21I GWGCWC 1 cut(s) 270
Alw26I GTCTC 1 cut(s) 297
Ama87I CYCGRG 1 cut(s) 269
AoxI GGCC 1 cut(s) 252
Asp700I GAANNNNTTC 1 cut(s) 57
AsuHPI GGTGA 2 cut(s) 37, 282
AvaI CYCGRG 1 cut(s) 269
BbsI GAAGAC 2 cut(s) 99, 119
Bbv12I GWGCWC 1 cut(s) 270
BcoDI GTCTC 1 cut(s) 297
BmeT110I CYCGRG 1 cut(s) 269
BmsI GCATC 1 cut(s) 172
BpiI GAAGAC 2 cut(s) 99, 119
BsaI GGTCTC 1 cut(s) 297
Bsc4I CCNNNNNNNGG 1 cut(s) 299
Bse118I RCCGGY 1 cut(s) 6
BseGI GGATG 3 cut(s) 55, 143, 153
BseLI CCNNNNNNNGG 1 cut(s) 299
BseRI GAGGAG 1 cut(s) 263
BshFI GGCC 1 cut(s) 254
BsiHKAI GWGCWC 1 cut(s) 270
BsiHKCI CYCGRG 1 cut(s) 269
BsiSI CCGG 1 cut(s) 7
BslI CCNNNNNNNGG 1 cut(s) 299
BsmAI GTCTC 1 cut(s) 297
BsnI GGCC 1 cut(s) 254
Bso31I GGTCTC 1 cut(s) 297
BsoBI CYCGRG 1 cut(s) 269
Bsp1286I GDGCHC 1 cut(s) 270
Bsp143I GATC 1 cut(s) 241
BspACI CCGC 1 cut(s) 14
BspANI GGCC 1 cut(s) 254
BspTNI GGTCTC 1 cut(s) 297
BsrBI CCGCTC 1 cut(s) 16
BsrFI RCCGGY 1 cut(s) 6
BssAI RCCGGY 1 cut(s) 6
BssMI GATC 1 cut(s) 241
BstF5I GGATG 3 cut(s) 55, 143, 153
BstKTI GATC 1 cut(s) 244
BstMAI GTCTC 1 cut(s) 297
BstMBI GATC 1 cut(s) 241
BstV2I GAAGAC 2 cut(s) 99, 119
BsuRI GGCC 1 cut(s) 254
BtsCI GGATG 3 cut(s) 55, 143, 153
Cfr10I RCCGGY 1 cut(s) 6
Csp6I GTAC 1 cut(s) 83
CspCI CAANNNNNGTGG 2 cut(s) 19, 54
CviAII CATG 2 cut(s) 86, 121
CviJI RGCY 1 cut(s) 254
CviKI_1 RGCY 1 cut(s) 254
CviQI GTAC 1 cut(s) 83
DpnI GATC 1 cut(s) 243
DpnII GATC 1 cut(s) 241
DraI TTTAAA 1 cut(s) 229
Eco31I GGTCTC 1 cut(s) 297
Eco88I CYCGRG 1 cut(s) 269
FaeI CATG 2 cut(s) 89, 124
FaiI YATR 5 cut(s) 87, 122, 170, 209, 282
FatI CATG 2 cut(s) 85, 120
FokI GGATG 3 cut(s) 62, 130, 140
HaeIII GGCC 1 cut(s) 254
HapII CCGG 1 cut(s) 7
Hin1II CATG 2 cut(s) 89, 124
HinfI GANTC 1 cut(s) 137
HpaII CCGG 1 cut(s) 7
HphI GGTGA 2 cut(s) 37, 282
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 1 cut(s) 245
Hpy8I GTNNAC 1 cut(s) 28
HpyAV CCTTC 1 cut(s) 293
HpyCH4V TGCA 1 cut(s) 100
Hsp92II CATG 2 cut(s) 89, 124
Kzo9I GATC 1 cut(s) 241
LpnPI CCDG 2 cut(s) 20, 32
LweI GCATC 1 cut(s) 172
MaeIII GTNAC 4 cut(s) 75, 203, 221, 288
MalI GATC 1 cut(s) 243
MbiI CCGCTC 1 cut(s) 16
MboI GATC 1 cut(s) 241
MboII GAAGA 3 cut(s) 104, 124, 226
MhlI GDGCHC 1 cut(s) 270
MlyI GAGTC 1 cut(s) 131
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 3 cut(s) 127, 241, 244
MroXI GAANNNNTTC 1 cut(s) 57
MseI TTAA 1 cut(s) 228
MspI CCGG 1 cut(s) 7
NdeII GATC 1 cut(s) 241
NlaIII CATG 2 cut(s) 89, 124
NmuCI GTSAC 1 cut(s) 288
PdmI GAANNNNTTC 1 cut(s) 57
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
RsaI GTAC 1 cut(s) 84
RsaNI GTAC 1 cut(s) 83
SaqAI TTAA 1 cut(s) 228
Sau3AI GATC 1 cut(s) 241
SchI GAGTC 1 cut(s) 131
SduI GDGCHC 1 cut(s) 270
SetI ASST 3 cut(s) 40, 75, 119
SfaNI GCATC 1 cut(s) 172
SsiI CCGC 1 cut(s) 14
TaqI TCGA 1 cut(s) 140
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TseFI GTSAC 1 cut(s) 288
Tsp45I GTSAC 1 cut(s) 288
TspDTI ATGAA 3 cut(s) 17, 66, 185
TspGWI ACGGA 1 cut(s) 136
XmnI GAANNNNTTC 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.