Rh7CG430900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000269
Physical Location & Seq
Forward (+)
56421238 .. 56422037
800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG430900.1

Sequence Viewer

Length: 582 bp
ATGCCGCCAAAGGTCTACACAAAGAAGGCACCCAAAAGGGTGAAACCGAGCAGCTCCAGTGACTCTGATGGAGGTGCCCGAAAGAGTTCTCGAATGGCGGCCCCTAAACCGAGCAGCTCCACAACGATCTCCGATGGAGGCCCCCGAAAGAGTACTCGAATTGCCGCCTCTAAAGCATCGGCTTCGGCGACGGTCTCTGAGGTCTCGAACCAAAATTCTCCAATTTTAGAGTCCGCAAAGAAAGCTTCTATTAACGGCACCGAAGTGGTGGTTGAGGTACCTAAACTGAAACCTACTTCTGATGAAGCGGTAATTGAGGCACCGAAACCTACTTTCGATGAACCGGTGGTTGAGGCGGAGAAACCTCCTTCCAATAATACGCGGTCGCGAAAAGAGAAGGCACCAGAGGATTTAGAGTTGTCTGCCTCACCTGCCGAAGCCAAAGAGGTGAAGGATCGAAAGAAGCTCATCATGAAGAAGAAAGCCTCCGGTCGTTCCATGAGCTTTTTGAACTACCTTTTCGAGTTGAGATATCTCAAAAATGGAAAGAGCTTCCAGCTGAAGAGAAGGAATAGTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

20.92

Weight (kDa)

10.05

Isoelectric Point (pI)

54.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 439
Acc36I ACCTGC 1 cut(s) 439
Acc65I GGTACC 1 cut(s) 277
AccB1I GGYRCC 6 cut(s) 28, 74, 257, 277, 319, 400
AccI GTMKAC 1 cut(s) 15
AccII CGCG 2 cut(s) 382, 388
AciI CCGC 7 cut(s) 5, 98, 165, 234, 308, 356, 382
AclWI GGATC 1 cut(s) 462
AcsI RAATTY 1 cut(s) 214
AcuI CTGAAG 1 cut(s) 581
AfaI GTAC 2 cut(s) 154, 279
AgeI ACCGGT 1 cut(s) 343
AgsI TTSAA 1 cut(s) 511
AleI CACNNNNGTG 1 cut(s) 263
AluBI AGCT 7 cut(s) 54, 117, 245, 466, 504, 552, 559
AluI AGCT 7 cut(s) 54, 117, 245, 466, 504, 552, 559
Alw26I GTCTC 2 cut(s) 199, 208
AlwI GGATC 1 cut(s) 462
AoxI GGCC 2 cut(s) 99, 139
ApeKI GCWGC 2 cut(s) 51, 114
ApoI RAATTY 1 cut(s) 214
AsiGI ACCGGT 1 cut(s) 343
Asp700I GAANNNNTTC 1 cut(s) 85
Asp718I GGTACC 1 cut(s) 277
AspS9I GGNCC 2 cut(s) 100, 140
AsuHPI GGTGA 3 cut(s) 52, 420, 460
BaeGI GKGCMC 1 cut(s) 79
BanI GGYRCC 6 cut(s) 28, 74, 257, 277, 319, 400
BbvI GCAGC 2 cut(s) 63, 126
BccI CCATC 2 cut(s) 62, 128
BceAI ACGGC 1 cut(s) 271
BcgI CGANNNNNNTGC 2 cut(s) 165, 199
BcoDI GTCTC 2 cut(s) 199, 208
BfuAI ACCTGC 1 cut(s) 439
BisI GCNGC 5 cut(s) 5, 52, 99, 115, 165
BlsI GCNGC 5 cut(s) 6, 53, 100, 116, 166
BmcAI AGTACT 1 cut(s) 154
BmgT120I GGNCC 2 cut(s) 100, 140
BmiI GGNNCC 8 cut(s) 30, 76, 102, 142, 259, 279, 321, 402
BmsI GCATC 1 cut(s) 185
BpmI CTGGAG 1 cut(s) 40
BsaI GGTCTC 2 cut(s) 199, 208
BsaWI WCCGGW 2 cut(s) 343, 488
Bse118I RCCGGY 1 cut(s) 343
Bse1I ACTGG 1 cut(s) 57
BseMII CTCAG 1 cut(s) 189
BseNI ACTGG 1 cut(s) 57
BseSI GKGCMC 1 cut(s) 79
BseXI GCAGC 2 cut(s) 63, 126
Bsh1236I CGCG 2 cut(s) 382, 388
Bsh1285I CGRYCG 2 cut(s) 386, 493
BshFI GGCC 2 cut(s) 101, 141
BshNI GGYRCC 6 cut(s) 28, 74, 257, 277, 319, 400
BshTI ACCGGT 1 cut(s) 343
BsiEI CGRYCG 2 cut(s) 386, 493
BsiSI CCGG 2 cut(s) 344, 489
BsmAI GTCTC 2 cut(s) 199, 208
BsnI GGCC 2 cut(s) 101, 141
Bso31I GGTCTC 2 cut(s) 199, 208
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 2 cut(s) 126, 454
Bsp68I TCGCGA 1 cut(s) 388
BspACI CCGC 7 cut(s) 5, 98, 165, 234, 308, 356, 382
BspANI GGCC 2 cut(s) 101, 141
BspCNI CTCAG 1 cut(s) 190
BspFNI CGCG 2 cut(s) 382, 388
BspHI TCATGA 1 cut(s) 471
BspLI GGNNCC 8 cut(s) 30, 76, 102, 142, 259, 279, 321, 402
BspMI ACCTGC 1 cut(s) 439
BspPI GGATC 1 cut(s) 462
BspT107I GGYRCC 6 cut(s) 28, 74, 257, 277, 319, 400
BspTNI GGTCTC 2 cut(s) 199, 208
BsrFI RCCGGY 1 cut(s) 343
BsrI ACTGG 1 cut(s) 57
BssAI RCCGGY 1 cut(s) 343
BssMI GATC 2 cut(s) 126, 454
Bst4CI ACNGT 1 cut(s) 193
Bst6I CTCTTC 1 cut(s) 557
BstDEI CTNAG 1 cut(s) 198
BstFNI CGCG 2 cut(s) 382, 388
BstKTI GATC 2 cut(s) 129, 457
BstMAI GTCTC 2 cut(s) 199, 208
BstMBI GATC 2 cut(s) 126, 454
BstMCI CGRYCG 2 cut(s) 386, 493
BstMWI GCNNNNNNNGC 3 cut(s) 173, 242, 431
BstSLI GKGCMC 1 cut(s) 79
BstUI CGCG 2 cut(s) 382, 388
BstV1I GCAGC 2 cut(s) 63, 126
BsuRI GGCC 2 cut(s) 101, 141
BtsIMutI CAGTG 1 cut(s) 64
BtuMI TCGCGA 1 cut(s) 388
BveI ACCTGC 1 cut(s) 439
CciI TCATGA 1 cut(s) 471
Cfr10I RCCGGY 1 cut(s) 343
Cfr13I GGNCC 2 cut(s) 100, 140
Csp6I GTAC 2 cut(s) 153, 278
CspAI ACCGGT 1 cut(s) 343
CviAII CATG 2 cut(s) 472, 499
CviQI GTAC 2 cut(s) 153, 278
DdeI CTNAG 1 cut(s) 198
DpnI GATC 2 cut(s) 128, 456
DpnII GATC 2 cut(s) 126, 454
Eam1104I CTCTTC 1 cut(s) 557
EarI CTCTTC 1 cut(s) 557
EciI GGCGGA 1 cut(s) 371
Eco31I GGTCTC 2 cut(s) 199, 208
Eco32I GATATC 1 cut(s) 533
Eco57I CTGAAG 1 cut(s) 581
EcoO109I RGGNCCY 1 cut(s) 140
EcoRV GATATC 1 cut(s) 533
FaeI CATG 2 cut(s) 475, 502
FaiI YATR 3 cut(s) 473, 500, 578
FatI CATG 2 cut(s) 471, 498
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 5 cut(s) 5, 52, 99, 115, 165
Fsp4HI GCNGC 5 cut(s) 5, 52, 99, 115, 165
GluI GCNGC 5 cut(s) 5, 52, 99, 115, 165
GsuI CTGGAG 1 cut(s) 40
HaeIII GGCC 2 cut(s) 101, 141
HapII CCGG 2 cut(s) 344, 489
Hin1II CATG 2 cut(s) 475, 502
HindIII AAGCTT 1 cut(s) 243
HinfI GANTC 2 cut(s) 62, 230
HpaII CCGG 2 cut(s) 344, 489
HphI GGTGA 3 cut(s) 52, 420, 460
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 4 cut(s) 67, 133, 199, 301
Hpy188III TCNNGA 4 cut(s) 90, 205, 387, 472
Hpy8I GTNNAC 1 cut(s) 16
Hpy99I CGWCG 1 cut(s) 193
HpyAV CCTTC 5 cut(s) 19, 378, 391, 445, 561
HpyCH4III ACNGT 1 cut(s) 193
HpyF10VI GCNNNNNNNGC 3 cut(s) 173, 242, 431
HpyF3I CTNAG 1 cut(s) 198
Hsp92II CATG 2 cut(s) 475, 502
KpnI GGTACC 1 cut(s) 281
Kzo9I GATC 2 cut(s) 126, 454
LmnI GCTCC 2 cut(s) 59, 122
LpnPI CCDG 6 cut(s) 70, 357, 417, 444, 502, 569
Lsp1109I GCAGC 2 cut(s) 63, 126
LweI GCATC 1 cut(s) 185
MaeIII GTNAC 1 cut(s) 59
MalI GATC 2 cut(s) 128, 456
MboI GATC 2 cut(s) 126, 454
MboII GAAGA 3 cut(s) 487, 490, 574
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 4 cut(s) 159, 214, 222, 312
MlyI GAGTC 2 cut(s) 56, 239
MroXI GAANNNNTTC 1 cut(s) 85
MseI TTAA 1 cut(s) 252
MslI CAYNNNNRTG 1 cut(s) 263
MspA1I CMGCKG 1 cut(s) 559
MspI CCGG 2 cut(s) 344, 489
MvnI CGCG 2 cut(s) 382, 388
MwoI GCNNNNNNNGC 3 cut(s) 173, 242, 431
NdeII GATC 2 cut(s) 126, 454
NlaIII CATG 2 cut(s) 475, 502
NlaIV GGNNCC 8 cut(s) 30, 76, 102, 142, 259, 279, 321, 402
NmuCI GTSAC 1 cut(s) 59
NruI TCGCGA 1 cut(s) 388
OliI CACNNNNGTG 1 cut(s) 263
PagI TCATGA 1 cut(s) 471
PaqCI CACCTGC 1 cut(s) 439
PcsI WCGNNNNNNNCGW 1 cut(s) 185
PdmI GAANNNNTTC 1 cut(s) 85
PinAI ACCGGT 1 cut(s) 343
PkrI GCNGC 5 cut(s) 6, 53, 100, 116, 166
PleI GAGTC 2 cut(s) 56, 238
PpsI GAGTC 2 cut(s) 56, 238
PspN4I GGNNCC 8 cut(s) 30, 76, 102, 142, 259, 279, 321, 402
PspPI GGNCC 2 cut(s) 100, 140
PvuII CAGCTG 1 cut(s) 559
RruI TCGCGA 1 cut(s) 388
RsaI GTAC 2 cut(s) 154, 279
RsaNI GTAC 2 cut(s) 153, 278
RseI CAYNNNNRTG 1 cut(s) 263
SaqAI TTAA 1 cut(s) 252
SatI GCNGC 5 cut(s) 5, 52, 99, 115, 165
Sau3AI GATC 2 cut(s) 126, 454
Sau96I GGNCC 2 cut(s) 100, 140
ScaI AGTACT 1 cut(s) 154
SchI GAGTC 2 cut(s) 56, 239
SduI GDGCHC 1 cut(s) 79
SfaNI GCATC 1 cut(s) 185
SmiMI CAYNNNNRTG 1 cut(s) 263
Sse9I AATT 4 cut(s) 159, 214, 222, 312
SsiI CCGC 7 cut(s) 5, 98, 165, 234, 308, 356, 382
TaaI ACNGT 1 cut(s) 193
TaqI TCGA 6 cut(s) 91, 157, 206, 336, 457, 522
TasI AATT 4 cut(s) 159, 214, 222, 312
TatI WGTACW 1 cut(s) 152
TauI GCSGC 3 cut(s) 7, 101, 167
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TscAI CASTG 1 cut(s) 64
TseFI GTSAC 1 cut(s) 59
TseI GCWGC 2 cut(s) 51, 114
Tsp45I GTSAC 1 cut(s) 59
TspDTI ATGAA 3 cut(s) 318, 354, 488
TspRI CASTG 1 cut(s) 64
XapI RAATTY 1 cut(s) 214
XmiI GTMKAC 1 cut(s) 15
XmnI GAANNNNTTC 1 cut(s) 85
ZrmI AGTACT 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.