FvH4_3g31812

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000269
Physical Location & Seq
Reverse (-)
26694696 .. 26695813
1118 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g31812.t1

Sequence Viewer

Length: 684 bp
ATGCCACTGAAAACGGCGAAGAAGGGAAGAAGTATCGAAAAGGAGCGATATATGGTTTTGAGACGGTGGAAAGCACTCCTTCTAAAGGTGGTCAAGCGTCGTAAAGTTGATGTTGGCTCGGTTGCTCCTCGTTCCTCTTTGAAAGATCCAAAGGACCTTGAGAATGCGGAACACCCTCCCCATGCATCTCCAGCGAAAAAATTGAGGCCCCGAGATGGCTCACAAAGTCAGGCGCAGATTGGCCCCTTCAGAGTCAATGCCGATAGAGGAGAGACTAACAAGAGACTTGTACTCTTTGTGTACGACACAGAGACGGACTTGCAGCTAAGCGAAACCATCGTTGATAGTGCTAGTGGCGGCATCTTTACCACTATAGATTCTGTGAGGACACTCCGACCTGATGGATTCATCAATGACGACATTATAACATTGTTTGCTGACTATCTATGGCAAGAACGACATGTTGTCAACGGTGTAAGTTCGAAGGAGTTGGGTGTGAGAAGATTTGACAATGATATTCCTACATGCAAAAAGATTTTCATACCCATGCACGACCTAAAACATTGGTACCTGTTGGTGGTGCGTCCTGATGTCCAAATAGCTGAAGTGTGGGATAGCTTGGGATGTAGCAGGAGACAGAAGAATCAGTGCAAAACCATTGTGAGTGATCACGTTTATTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3 Peptidase_C48

Protein Analysis

228

Amino Acids

26.04

Weight (kDa)

9.58

Isoelectric Point (pI)

52.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 166 - 220 1.1e-06 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 425
Acc65I GGTACC 1 cut(s) 567
AccB1I GGYRCC 1 cut(s) 567
AciI CCGC 2 cut(s) 167, 357
AclWI GGATC 1 cut(s) 140
AcuI CTGAAG 2 cut(s) 232, 624
AfaI GTAC 3 cut(s) 291, 302, 569
AfiI CCNNNNNNNGG 3 cut(s) 85, 215, 577
AflIII ACRYGT 1 cut(s) 460
AgsI TTSAA 1 cut(s) 142
AhdI GACNNNNNGTC 1 cut(s) 464
AluBI AGCT 3 cut(s) 325, 602, 618
AluI AGCT 3 cut(s) 325, 602, 618
Alw26I GTCTC 5 cut(s) 55, 266, 277, 305, 628
AlwI GGATC 1 cut(s) 140
Ama87I CYCGRG 1 cut(s) 210
AoxI GGCC 2 cut(s) 206, 241
ApeKI GCWGC 1 cut(s) 322
Asp718I GGTACC 1 cut(s) 567
AspLEI GCGC 1 cut(s) 235
AspS9I GGNCC 3 cut(s) 154, 207, 242
AsuII TTCGAA 1 cut(s) 482
AvaI CYCGRG 1 cut(s) 210
AvaII GGWCC 1 cut(s) 154
BaeI ACNNNNGTAYC 2 cut(s) 551, 584
BanI GGYRCC 1 cut(s) 567
BbvI GCAGC 1 cut(s) 334
BccI CCATC 3 cut(s) 209, 344, 395
BceAI ACGGC 1 cut(s) 30
BclI TGATCA 1 cut(s) 667
BcoDI GTCTC 5 cut(s) 55, 266, 277, 305, 628
BfaI CTAG 1 cut(s) 351
BfmI CTRYAG 1 cut(s) 372
BisI GCNGC 2 cut(s) 323, 358
BlpI GCTNAGC 1 cut(s) 326
BlsI GCNGC 2 cut(s) 324, 359
Bme18I GGWCC 1 cut(s) 154
BmeRI GACNNNNNGTC 1 cut(s) 464
BmeT110I CYCGRG 1 cut(s) 210
BmgT120I GGNCC 3 cut(s) 154, 207, 242
BmiI GGNNCC 3 cut(s) 209, 244, 569
BmsI GCATC 2 cut(s) 194, 369
BpmI CTGGAG 1 cut(s) 174
Bpu1102I GCTNAGC 1 cut(s) 326
Bpu14I TTCGAA 1 cut(s) 482
BpuEI CTTGAG 1 cut(s) 179
Bsc4I CCNNNNNNNGG 3 cut(s) 85, 215, 577
BseGI GGATG 1 cut(s) 629
BseLI CCNNNNNNNGG 3 cut(s) 85, 215, 577
BseRI GAGGAG 2 cut(s) 117, 282
BseXI GCAGC 1 cut(s) 334
BshFI GGCC 2 cut(s) 208, 243
BshNI GGYRCC 1 cut(s) 567
BsiHKCI CYCGRG 1 cut(s) 210
BslI CCNNNNNNNGG 3 cut(s) 85, 215, 577
BsmAI GTCTC 5 cut(s) 55, 266, 277, 305, 628
BsmBI CGTCTC 2 cut(s) 55, 305
BsmI GAATGC 1 cut(s) 169
BsnI GGCC 2 cut(s) 208, 243
BsoBI CYCGRG 1 cut(s) 210
Bsp119I TTCGAA 1 cut(s) 482
Bsp143I GATC 2 cut(s) 145, 667
Bsp1720I GCTNAGC 1 cut(s) 326
BspACI CCGC 2 cut(s) 167, 357
BspANI GGCC 2 cut(s) 208, 243
BspLI GGNNCC 3 cut(s) 209, 244, 569
BspPI GGATC 1 cut(s) 140
BspT104I TTCGAA 1 cut(s) 482
BspT107I GGYRCC 1 cut(s) 567
BssMI GATC 2 cut(s) 145, 667
Bst4CI ACNGT 2 cut(s) 66, 473
BstBI TTCGAA 1 cut(s) 482
BstDEI CTNAG 1 cut(s) 326
BstENI CCTNNNNNAGG 1 cut(s) 83
BstF5I GGATG 1 cut(s) 629
BstHHI GCGC 1 cut(s) 235
BstKTI GATC 2 cut(s) 148, 670
BstMAI GTCTC 5 cut(s) 55, 266, 277, 305, 628
BstMBI GATC 2 cut(s) 145, 667
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstNSI RCATGY 2 cut(s) 464, 528
BstSFI CTRYAG 1 cut(s) 372
BstV1I GCAGC 1 cut(s) 334
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
BsuRI GGCC 2 cut(s) 208, 243
BtsCI GGATG 1 cut(s) 629
BtsIMutI CAGTG 2 cut(s) 5, 653
CfoI GCGC 1 cut(s) 235
Cfr13I GGNCC 3 cut(s) 154, 207, 242
CseI GACGC 2 cut(s) 86, 572
Csp6I GTAC 3 cut(s) 290, 301, 568
CviAII CATG 4 cut(s) 182, 461, 525, 547
CviJI RGCY 7 cut(s) 117, 208, 219, 243, 325, 602, 618
CviKI_1 RGCY 7 cut(s) 117, 208, 219, 243, 325, 602, 618
CviQI GTAC 3 cut(s) 290, 301, 568
DdeI CTNAG 1 cut(s) 326
DpnI GATC 2 cut(s) 147, 669
DpnII GATC 2 cut(s) 145, 667
DriI GACNNNNNGTC 1 cut(s) 464
Eam1105I GACNNNNNGTC 1 cut(s) 464
Eco47I GGWCC 1 cut(s) 154
Eco57I CTGAAG 2 cut(s) 232, 624
Eco88I CYCGRG 1 cut(s) 210
EcoNI CCTNNNNNAGG 1 cut(s) 83
EcoO109I RGGNCCY 2 cut(s) 154, 207
EcoT22I ATGCAT 1 cut(s) 187
Esp3I CGTCTC 2 cut(s) 55, 305
FaeI CATG 4 cut(s) 185, 464, 528, 550
FalI AAGNNNNNCTT 2 cut(s) 63, 95
FatI CATG 4 cut(s) 181, 460, 524, 546
FbaI TGATCA 1 cut(s) 667
Fnu4HI GCNGC 2 cut(s) 323, 358
FokI GGATG 1 cut(s) 636
Fsp4HI GCNGC 2 cut(s) 323, 358
FspBI CTAG 1 cut(s) 351
GlaI GCGC 1 cut(s) 234
GluI GCNGC 2 cut(s) 323, 358
GsuI CTGGAG 1 cut(s) 174
HaeIII GGCC 2 cut(s) 208, 243
HgaI GACGC 2 cut(s) 86, 572
HhaI GCGC 1 cut(s) 235
Hin1II CATG 4 cut(s) 185, 464, 528, 550
Hin6I GCGC 1 cut(s) 233
HinP1I GCGC 1 cut(s) 233
HincII GTYRAC 1 cut(s) 469
HindII GTYRAC 1 cut(s) 469
HinfI GANTC 4 cut(s) 252, 377, 405, 643
Hpy166II GTNNAC 2 cut(s) 301, 469
Hpy188I TCNGA 2 cut(s) 251, 395
Hpy188III TCNNGA 1 cut(s) 587
Hpy8I GTNNAC 2 cut(s) 301, 469
Hpy99I CGWCG 1 cut(s) 102
HpyAV CCTTC 4 cut(s) 16, 89, 256, 478
HpyCH4III ACNGT 2 cut(s) 66, 473
HpyCH4IV ACGT 1 cut(s) 672
HpyCH4V TGCA 5 cut(s) 185, 322, 528, 550, 651
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 1 cut(s) 326
HpySE526I ACGT 1 cut(s) 672
Hsp92II CATG 4 cut(s) 185, 464, 528, 550
HspAI GCGC 1 cut(s) 233
KpnI GGTACC 1 cut(s) 571
Ksp22I TGATCA 1 cut(s) 667
Kzo9I GATC 2 cut(s) 145, 667
LmnI GCTCC 2 cut(s) 43, 130
LpnPI CCDG 6 cut(s) 204, 215, 411, 584, 600, 616
Lsp1109I GCAGC 1 cut(s) 334
LweI GCATC 2 cut(s) 194, 369
MaeI CTAG 1 cut(s) 351
MaeII ACGT 1 cut(s) 672
MalI GATC 2 cut(s) 147, 669
MboI GATC 2 cut(s) 145, 667
MboII GAAGA 4 cut(s) 31, 39, 513, 652
MflI RGATCY 1 cut(s) 145
MluCI AATT 1 cut(s) 200
MlyI GAGTC 1 cut(s) 261
MmeI TCCRAC 1 cut(s) 418
MnlI CCTC 6 cut(s) 138, 145, 186, 198, 260, 378
Mph1103I ATGCAT 1 cut(s) 187
MslI CAYNNNNRTG 1 cut(s) 545
Mva1269I GAATGC 1 cut(s) 169
MwoI GCNNNNNNNGC 1 cut(s) 191
NdeII GATC 2 cut(s) 145, 667
NlaIII CATG 4 cut(s) 185, 464, 528, 550
NlaIV GGNNCC 3 cut(s) 209, 244, 569
NsiI ATGCAT 1 cut(s) 187
NspI RCATGY 2 cut(s) 464, 528
NspV TTCGAA 1 cut(s) 482
PciI ACATGT 1 cut(s) 460
PctI GAATGC 1 cut(s) 169
PfeI GAWTC 3 cut(s) 377, 405, 643
PkrI GCNGC 2 cut(s) 324, 359
PleI GAGTC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 260
PpuMI RGGWCCY 1 cut(s) 154
PscI ACATGT 1 cut(s) 460
PsiI TTATAA 1 cut(s) 425
Psp5II RGGWCCY 1 cut(s) 154
PspN4I GGNNCC 3 cut(s) 209, 244, 569
PspPI GGNCC 3 cut(s) 154, 207, 242
PspPPI RGGWCCY 1 cut(s) 154
PsuI RGATCY 1 cut(s) 145
RsaI GTAC 3 cut(s) 291, 302, 569
RsaNI GTAC 3 cut(s) 290, 301, 568
RseI CAYNNNNRTG 1 cut(s) 545
SatI GCNGC 2 cut(s) 323, 358
Sau3AI GATC 2 cut(s) 145, 667
Sau96I GGNCC 3 cut(s) 154, 207, 242
SchI GAGTC 1 cut(s) 261
SetI ASST 9 cut(s) 90, 159, 327, 400, 558, 573, 604, 620, 675
SfaNI GCATC 2 cut(s) 194, 369
SfcI CTRYAG 1 cut(s) 372
SfuI TTCGAA 1 cut(s) 482
SinI GGWCC 1 cut(s) 154
SmiMI CAYNNNNRTG 1 cut(s) 545
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 1 cut(s) 200
SsiI CCGC 2 cut(s) 167, 357
SspMI CTAG 1 cut(s) 351
TaaI ACNGT 2 cut(s) 66, 473
TaiI ACGT 1 cut(s) 675
TaqI TCGA 2 cut(s) 36, 482
TasI AATT 1 cut(s) 200
TatI WGTACW 1 cut(s) 289
TauI GCSGC 1 cut(s) 360
TfiI GAWTC 3 cut(s) 377, 405, 643
TscAI CASTG 2 cut(s) 12, 653
TseI GCWGC 1 cut(s) 322
TspDTI ATGAA 2 cut(s) 397, 529
TspGWI ACGGA 1 cut(s) 329
TspRI CASTG 2 cut(s) 12, 653
VpaK11BI GGWCC 1 cut(s) 154
XagI CCTNNNNNAGG 1 cut(s) 83
XceI RCATGY 2 cut(s) 464, 528
XspI CTAG 1 cut(s) 351
Zsp2I ATGCAT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.