Rh7CG267800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000269
Physical Location & Seq
Reverse (-)
26310140 .. 26310532
393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG267800.1

Sequence Viewer

Length: 393 bp
ATGTTGCGTGTCCTTGTGGACTCCGTAGACCCCAATGCATGTTTTATAACTATGCACGAAAAGGAGATTGAAATGGATGCAAGTGACTTTGAAAATGTGATGGGGTTGAAGAATGCTGGGTCCGAGGTCGACTTTAAAGGTTCCACTAATGATCACCCTGAGTTGATGGCGATAATAAACTCCTTATGTGGGAAGGATAAGAAGATCAGTTTAAGGGACGTGCAGAACTACCTGAAGGATACAGAAGAAGTTGACAACAAGTTCAAGCGCATGTTTATGCTGTTCACAATGAGCACCATCCTTAGCCCATCTGCCTCACTGACGATACCAAAGAAGTGGCTACTGGCCTTGAAGGACACTCGCCTGATTAGCTCTTTAAACTGGGTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

130

Amino Acids

14.78

Weight (kDa)

5.18

Isoelectric Point (pI)

32.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1985 PF09331 11 - 128 4.6e-06 Domain of unknown function (DUF1985)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 47
AccI GTMKAC 2 cut(s) 27, 129
AcuI CTGAAG 1 cut(s) 254
AfiI CCNNNNNNNGG 1 cut(s) 189
AgsI TTSAA 5 cut(s) 71, 92, 109, 265, 352
AjiI CACGTC 1 cut(s) 220
AluBI AGCT 1 cut(s) 372
AluI AGCT 1 cut(s) 372
Alw21I GWGCWC 1 cut(s) 296
AoxI GGCC 1 cut(s) 345
AspLEI GCGC 1 cut(s) 270
AspS9I GGNCC 1 cut(s) 120
AsuHPI GGTGA 1 cut(s) 146
AvaII GGWCC 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 296
BccI CCATC 4 cut(s) 94, 160, 305, 316
BciVI GTATCC 1 cut(s) 232
BclI TGATCA 1 cut(s) 151
BfuI GTATCC 1 cut(s) 232
Bme18I GGWCC 1 cut(s) 120
BmgBI CACGTC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 120
BmiI GGNNCC 2 cut(s) 121, 142
BmrI ACTGGG 1 cut(s) 391
BmsI GCATC 1 cut(s) 67
BmuI ACTGGG 1 cut(s) 391
Bpu10I CCTNAGC 1 cut(s) 302
BsaJI CCNNGG 1 cut(s) 123
Bsc4I CCNNNNNNNGG 1 cut(s) 189
Bse1I ACTGG 2 cut(s) 348, 386
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 2 cut(s) 82, 297
BseLI CCNNNNNNNGG 1 cut(s) 189
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 2 cut(s) 348, 386
BseYI CCCAGC 1 cut(s) 116
BsgI GTGCAG 1 cut(s) 242
BshFI GGCC 1 cut(s) 347
BsiHKAI GWGCWC 1 cut(s) 296
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 1 cut(s) 189
BsmFI GGGAC 1 cut(s) 230
BsmI GAATGC 1 cut(s) 118
BsnI GGCC 1 cut(s) 347
Bsp1286I GDGCHC 1 cut(s) 296
Bsp143I GATC 2 cut(s) 151, 204
BspANI GGCC 1 cut(s) 347
BspCNI CTCAG 1 cut(s) 151
BspLI GGNNCC 2 cut(s) 121, 142
BsrI ACTGG 2 cut(s) 348, 386
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 2 cut(s) 151, 204
BstDEI CTNAG 2 cut(s) 159, 302
BstF5I GGATG 2 cut(s) 82, 297
BstHHI GCGC 1 cut(s) 270
BstKTI GATC 2 cut(s) 154, 207
BstMBI GATC 2 cut(s) 151, 204
BstMWI GCNNNNNNNGC 1 cut(s) 369
BstNSI RCATGY 2 cut(s) 42, 274
BstXI CCANNNNNNTGG 1 cut(s) 336
BsuI GTATCC 1 cut(s) 232
BsuRI GGCC 1 cut(s) 347
BtrI CACGTC 1 cut(s) 220
BtsCI GGATG 2 cut(s) 82, 297
BtsIMutI CAGTG 1 cut(s) 317
CfoI GCGC 1 cut(s) 270
Cfr13I GGNCC 1 cut(s) 120
CviAII CATG 2 cut(s) 39, 271
CviJI RGCY 4 cut(s) 306, 340, 347, 372
CviKI_1 RGCY 4 cut(s) 306, 340, 347, 372
DdeI CTNAG 2 cut(s) 159, 302
DpnI GATC 2 cut(s) 153, 206
DpnII GATC 2 cut(s) 151, 204
DraI TTTAAA 2 cut(s) 136, 378
Eco47I GGWCC 1 cut(s) 120
Eco57I CTGAAG 1 cut(s) 254
EcoT22I ATGCAT 1 cut(s) 40
FaeI CATG 2 cut(s) 42, 274
FaiI YATR 6 cut(s) 40, 47, 53, 187, 272, 278
FaqI GGGAC 1 cut(s) 230
FatI CATG 2 cut(s) 38, 270
FbaI TGATCA 1 cut(s) 151
FblI GTMKAC 2 cut(s) 27, 129
FokI GGATG 2 cut(s) 89, 284
GlaI GCGC 1 cut(s) 269
GsaI CCCAGC 1 cut(s) 120
HaeIII GGCC 1 cut(s) 347
HhaI GCGC 1 cut(s) 270
Hin1II CATG 2 cut(s) 42, 274
Hin6I GCGC 1 cut(s) 268
HinP1I GCGC 1 cut(s) 268
HincII GTYRAC 2 cut(s) 130, 253
HindII GTYRAC 2 cut(s) 130, 253
HinfI GANTC 1 cut(s) 20
HphI GGTGA 1 cut(s) 146
Hpy166II GTNNAC 5 cut(s) 19, 28, 130, 253, 285
Hpy188I TCNGA 1 cut(s) 124
Hpy8I GTNNAC 5 cut(s) 19, 28, 130, 253, 285
HpyAV CCTTC 3 cut(s) 187, 229, 346
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 4 cut(s) 38, 55, 80, 223
HpyF10VI GCNNNNNNNGC 1 cut(s) 369
HpyF3I CTNAG 2 cut(s) 159, 302
HpySE526I ACGT 1 cut(s) 219
Hsp92II CATG 2 cut(s) 42, 274
HspAI GCGC 1 cut(s) 268
Ksp22I TGATCA 1 cut(s) 151
Kzo9I GATC 2 cut(s) 151, 204
LpnPI CCDG 6 cut(s) 102, 171, 245, 329, 367, 377
LweI GCATC 1 cut(s) 67
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 1 cut(s) 83
MalI GATC 2 cut(s) 153, 206
MboI GATC 2 cut(s) 151, 204
MboII GAAGA 3 cut(s) 121, 214, 257
MhlI GDGCHC 1 cut(s) 296
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 2 cut(s) 118, 325
Mph1103I ATGCAT 1 cut(s) 40
MseI TTAA 4 cut(s) 135, 212, 377, 391
MslI CAYNNNNRTG 1 cut(s) 275
Mva1269I GAATGC 1 cut(s) 118
MwoI GCNNNNNNNGC 1 cut(s) 369
NdeII GATC 2 cut(s) 151, 204
NlaIII CATG 2 cut(s) 42, 274
NlaIV GGNNCC 2 cut(s) 121, 142
NmuCI GTSAC 1 cut(s) 83
NsiI ATGCAT 1 cut(s) 40
NspI RCATGY 2 cut(s) 42, 274
PctI GAATGC 1 cut(s) 118
PleI GAGTC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 14
PsiI TTATAA 1 cut(s) 47
PspFI CCCAGC 1 cut(s) 116
PspN4I GGNNCC 2 cut(s) 121, 142
PspPI GGNCC 1 cut(s) 120
RseI CAYNNNNRTG 1 cut(s) 275
SalI GTCGAC 1 cut(s) 128
SaqAI TTAA 4 cut(s) 135, 212, 377, 391
Sau3AI GATC 2 cut(s) 151, 204
Sau96I GGNCC 1 cut(s) 120
SchI GAGTC 1 cut(s) 14
SduI GDGCHC 1 cut(s) 296
SetI ASST 5 cut(s) 129, 142, 222, 234, 374
SfaNI GCATC 1 cut(s) 67
SinI GGWCC 1 cut(s) 120
SmiMI CAYNNNNRTG 1 cut(s) 275
TaiI ACGT 1 cut(s) 222
TaqI TCGA 1 cut(s) 129
Tru1I TTAA 4 cut(s) 135, 212, 377, 391
Tru9I TTAA 4 cut(s) 135, 212, 377, 391
TscAI CASTG 1 cut(s) 324
TseFI GTSAC 1 cut(s) 83
Tsp45I GTSAC 1 cut(s) 83
TspGWI ACGGA 1 cut(s) 13
TspRI CASTG 1 cut(s) 324
VpaK11BI GGWCC 1 cut(s) 120
XceI RCATGY 2 cut(s) 42, 274
XmiI GTMKAC 2 cut(s) 27, 129
Zsp2I ATGCAT 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.