Rroxscaffold_6G00396640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000269
Physical Location & Seq
Reverse (-)
18146657 .. 18149966
3310 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00396640.1

Sequence Viewer

Length: 543 bp
ATGAAACGGGCAAATTTGCTCAAATGGGTGAACAAGCAAGGTGGTTTGCTGGATGAAAATGTTCTTGTGGTAAAAGTTGGCGATCGTGTTGGTAGTGGAGATCATGCCAAAACATATGGGGTGATTAAGAAAGAAATGTTTGACTTGGCTGCTAAAGTAAATGGGTTGGAAAATAATATGTGCAATCCGAGAGATGATATGATGGGAAAGATGGACAAAGTCTTGATCAGCCCACCGAAAAGTATGAAGAAAGTTGATGCCAACCCCATGACCAAGAGTAACATAGAGAAAATTGGTAACTTCAAAGTCAAGGGACATCGGGAGGAGGCCGACAAAGGAGTGCTCAGTGGAGACACAGATGCTTGGACAAGTAGAACCGCCTATGAAACTCAAAACAATCGTAATTTTCAATCTAGGTTACTCATTCTCAATCTAGAATTCGATAGGCAAGTAGACACAATTGAGGAGCCTAATAGAAGGGAACTACATCATAAGGAAAGCATGTTTACGTGTAAAGCGATGTGGTGTTTGCCAAGAGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

20.49

Weight (kDa)

9.22

Isoelectric Point (pI)

27.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 453
AciI CCGC 1 cut(s) 378
AcsI RAATTY 2 cut(s) 13, 437
AflIII ACRYGT 1 cut(s) 509
AgsI TTSAA 2 cut(s) 304, 410
Alw21I GWGCWC 1 cut(s) 345
Alw26I GTCTC 1 cut(s) 345
AoxI GGCC 1 cut(s) 327
ApeKI GCWGC 1 cut(s) 149
ApoI RAATTY 2 cut(s) 13, 437
Asp700I GAANNNNTTC 1 cut(s) 60
AsuHPI GGTGA 2 cut(s) 40, 133
Bbv12I GWGCWC 1 cut(s) 345
BbvI GCAGC 1 cut(s) 136
BccI CCATC 2 cut(s) 196, 205
BclI TGATCA 1 cut(s) 225
BcoDI GTCTC 1 cut(s) 345
BfaI CTAG 2 cut(s) 414, 434
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
BmiI GGNNCC 1 cut(s) 468
BmsI GCATC 2 cut(s) 247, 349
BsaAI YACGTR 1 cut(s) 510
BseGI GGATG 1 cut(s) 58
BseMII CTCAG 1 cut(s) 358
BseRI GAGGAG 2 cut(s) 338, 479
BseXI GCAGC 1 cut(s) 136
Bsh1285I CGRYCG 1 cut(s) 85
BshFI GGCC 1 cut(s) 329
BsiEI CGRYCG 1 cut(s) 85
BsiHKAI GWGCWC 1 cut(s) 345
BslFI GGGAC 1 cut(s) 327
BsmAI GTCTC 1 cut(s) 345
BsmFI GGGAC 1 cut(s) 327
BsnI GGCC 1 cut(s) 329
Bsp1286I GDGCHC 1 cut(s) 345
Bsp143I GATC 3 cut(s) 82, 100, 225
BspACI CCGC 1 cut(s) 378
BspANI GGCC 1 cut(s) 329
BspCNI CTCAG 1 cut(s) 357
BspLI GGNNCC 1 cut(s) 468
BssMI GATC 3 cut(s) 82, 100, 225
BstBAI YACGTR 1 cut(s) 510
BstDEI CTNAG 1 cut(s) 344
BstF5I GGATG 1 cut(s) 58
BstKTI GATC 3 cut(s) 85, 103, 228
BstMAI GTCTC 1 cut(s) 345
BstMBI GATC 3 cut(s) 82, 100, 225
BstMCI CGRYCG 1 cut(s) 85
BstNSI RCATGY 1 cut(s) 505
BstV1I GCAGC 1 cut(s) 136
BsuRI GGCC 1 cut(s) 329
BtgZI GCGATG 1 cut(s) 533
BtsCI GGATG 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 352
CspCI CAANNNNNGTGG 2 cut(s) 22, 57
CviAII CATG 3 cut(s) 104, 268, 502
CviJI RGCY 4 cut(s) 149, 231, 329, 469
CviKI_1 RGCY 4 cut(s) 149, 231, 329, 469
DdeI CTNAG 1 cut(s) 344
DpnI GATC 3 cut(s) 84, 102, 227
DpnII GATC 3 cut(s) 82, 100, 225
EcoRI GAATTC 1 cut(s) 437
FaeI CATG 3 cut(s) 107, 271, 505
FaqI GGGAC 1 cut(s) 327
FatI CATG 3 cut(s) 103, 267, 501
FauNDI CATATG 1 cut(s) 115
FbaI TGATCA 1 cut(s) 225
FblI GTMKAC 1 cut(s) 453
Fnu4HI GCNGC 1 cut(s) 150
FokI GGATG 1 cut(s) 65
Fsp4HI GCNGC 1 cut(s) 150
FspBI CTAG 2 cut(s) 414, 434
GluI GCNGC 1 cut(s) 150
HaeIII GGCC 1 cut(s) 329
Hin1II CATG 3 cut(s) 107, 271, 505
HphI GGTGA 2 cut(s) 40, 133
Hpy166II GTNNAC 3 cut(s) 31, 454, 507
Hpy188I TCNGA 1 cut(s) 189
Hpy188III TCNNGA 3 cut(s) 223, 320, 434
Hpy8I GTNNAC 3 cut(s) 31, 454, 507
HpyAV CCTTC 1 cut(s) 471
HpyCH4IV ACGT 1 cut(s) 509
HpyCH4V TGCA 1 cut(s) 183
HpyF3I CTNAG 1 cut(s) 344
HpySE526I ACGT 1 cut(s) 509
Hsp92II CATG 3 cut(s) 107, 271, 505
Ksp22I TGATCA 1 cut(s) 225
Kzo9I GATC 3 cut(s) 82, 100, 225
LmnI GCTCC 1 cut(s) 466
LpnPI CCDG 1 cut(s) 35
Lsp1109I GCAGC 1 cut(s) 136
LweI GCATC 2 cut(s) 247, 349
MaeI CTAG 2 cut(s) 414, 434
MaeII ACGT 1 cut(s) 509
MaeIII GTNAC 3 cut(s) 278, 296, 417
MalI GATC 3 cut(s) 84, 102, 227
MboI GATC 3 cut(s) 82, 100, 225
MboII GAAGA 1 cut(s) 259
MfeI CAATTG 1 cut(s) 459
MhlI GDGCHC 1 cut(s) 345
MluCI AATT 5 cut(s) 13, 291, 403, 437, 459
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 4 cut(s) 316, 319, 457, 530
MroXI GAANNNNTTC 1 cut(s) 60
MseI TTAA 1 cut(s) 126
MunI CAATTG 1 cut(s) 459
NdeI CATATG 1 cut(s) 115
NdeII GATC 3 cut(s) 82, 100, 225
NlaIII CATG 3 cut(s) 107, 271, 505
NlaIV GGNNCC 1 cut(s) 468
NspI RCATGY 1 cut(s) 505
PcsI WCGNNNNNNNCGW 1 cut(s) 515
PdmI GAANNNNTTC 1 cut(s) 60
PflFI GACNNNGTC 1 cut(s) 218
PkrI GCNGC 1 cut(s) 151
Ple19I CGATCG 1 cut(s) 85
Ppu21I YACGTR 1 cut(s) 510
PspN4I GGNNCC 1 cut(s) 468
PsyI GACNNNGTC 1 cut(s) 218
PvuI CGATCG 1 cut(s) 85
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 1 cut(s) 150
Sau3AI GATC 3 cut(s) 82, 100, 225
SduI GDGCHC 1 cut(s) 345
SetI ASST 3 cut(s) 43, 419, 512
SfaNI GCATC 2 cut(s) 247, 349
Sse9I AATT 5 cut(s) 13, 291, 403, 437, 459
SsiI CCGC 1 cut(s) 378
SspMI CTAG 2 cut(s) 414, 434
TaiI ACGT 1 cut(s) 512
TaqI TCGA 1 cut(s) 441
TasI AATT 5 cut(s) 13, 291, 403, 437, 459
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 1 cut(s) 352
TseI GCWGC 1 cut(s) 149
TspDTI ATGAA 4 cut(s) 17, 69, 260, 399
TspRI CASTG 1 cut(s) 352
Tth111I GACNNNGTC 1 cut(s) 218
XapI RAATTY 2 cut(s) 13, 437
XbaI TCTAGA 1 cut(s) 433
XceI RCATGY 1 cut(s) 505
XmiI GTMKAC 1 cut(s) 453
XmnI GAANNNNTTC 1 cut(s) 60
XspI CTAG 2 cut(s) 414, 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.