FvH4_4g08581

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000269
Physical Location & Seq
Reverse (-)
8817918 .. 8820651
2734 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g08581.t1

Sequence Viewer

Length: 1092 bp
ATGGTTCGATGGAAAGATCTTCCATTGGAGGAGAAGCAGAAGTATGTGCCGGAGCCAAATCCATTGGAGGACGATGTTGGGACTGATGATTCTATGGATCTGTTTAGCATAAACTGTCGATGCTCTCCAGAACGTTTCAAGAACTTAGTTTCTGGGTTTAGTGATGAGCAAAAGGCGGCGTGTAAAGCACTTGGTTTTGGTGTTTTACTGGAGATTGCTGGGAAGAGGCTACGCAAGAGCACGAATGCCAAGAAAGAGGTGGACTTTGTTGGTCCTATTAAAGATAACCCTGACCTCATGAGTATAGTGCGAGAGTTCTCTACAAAGGAAGGCAAATCAATGACGGTTTTGAAGGATGTGGAGAACTACTTGAAGAATAAAGAAGCACCGAAGTGGCTGCTGCCGCTGAGGGATACGAGCCTCATACGCAAATACAACTGGTCTGAACATGCTTTCAATTATTTGATGAAAGGAATCAGTGAGTTCCAGAAGATACCCCAAGATACGCAGACCTCCAATAATCCACAAGGGAGGCAGACCTACATCAACAGCTGCGTCCTTTTTTTGCAGCTTTTTTACTTTGACTGCGTGGTGGCACCTAATCACTATGTGGACAGGTCAATGTACCCAGTTGAAGCTTGGGGGGATAGACAGGCCGACAAGAAGTGCGTAAGCCCGGTGATCGTGTTTGTGGAAGAAGTAGCAATTGATGAGGGATTGTCTCATAGGGTGGCTATTTTGGAGGAAAGCTTCAAGGAGTACAAGGAGTACAAAGCTCAAATATCAGAAAAGTTGGGGATGATACTGTCCGTGCTGGAAAAAATTGTACGTAAGAATGTGAACTCGGGCAAGGATGCAACAGTGTCACCGGAGCTGCCGACAAAGAATTCTACACCCGTGGATATTTCATTTGAATCATCCATGATCAGTCCGTGTAGGTATATCTTTAAACTAAGTAAGGTTTCACAAAGTTATACTATGGGGAAGAATGTTGAGAAGGAAGCCTCAGAAAAGAATGTTGAGAAACAGAGGGATGAAATAATTGATCTGACTGACCCTTTCAAAATGTTGAGAAGGAGTCCTCATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

364

Amino Acids

41.58

Weight (kDa)

6.92

Isoelectric Point (pI)

43.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 595
AciI CCGC 2 cut(s) 176, 404
AclI AACGTT 1 cut(s) 133
AclWI GGATC 1 cut(s) 105
AcsI RAATTY 1 cut(s) 886
AdeI CACNNNGTG 1 cut(s) 610
AfaI GTAC 4 cut(s) 626, 761, 770, 828
AgsI TTSAA 8 cut(s) 139, 352, 373, 457, 635, 754, 914, 1063
AleI CACNNNNGTG 1 cut(s) 391
AluBI AGCT 6 cut(s) 552, 571, 638, 750, 776, 874
AluI AGCT 6 cut(s) 552, 571, 638, 750, 776, 874
Alw21I GWGCWC 1 cut(s) 242
Alw26I GTCTC 1 cut(s) 726
AlwI GGATC 1 cut(s) 105
Ama87I CYCGRG 1 cut(s) 844
AoxI GGCC 1 cut(s) 654
ApeKI GCWGC 5 cut(s) 397, 400, 552, 568, 874
ApoI RAATTY 1 cut(s) 886
AspS9I GGNCC 1 cut(s) 272
AsuC2I CCSGG 1 cut(s) 677
AsuHPI GGTGA 2 cut(s) 691, 858
AvaI CYCGRG 1 cut(s) 844
AvaII GGWCC 1 cut(s) 272
BanI GGYRCC 1 cut(s) 595
Bbv12I GWGCWC 1 cut(s) 242
BbvCI CCTCAGC 1 cut(s) 407
BbvI GCAGC 5 cut(s) 384, 387, 539, 580, 861
BccI CCATC 1 cut(s) 3
BcgI CGANNNNNNTGC 2 cut(s) 379, 413
BciVI GTATCC 1 cut(s) 406
BclI TGATCA 1 cut(s) 924
BcnI CCSGG 1 cut(s) 677
BcoDI GTCTC 1 cut(s) 726
BfuI GTATCC 1 cut(s) 406
BglII AGATCT 1 cut(s) 16
BisI GCNGC 7 cut(s) 177, 398, 401, 404, 553, 569, 875
BlsI GCNGC 7 cut(s) 178, 399, 402, 405, 554, 570, 876
Bme1390I CCNGG 1 cut(s) 677
Bme18I GGWCC 1 cut(s) 272
BmeT110I CYCGRG 1 cut(s) 844
BmgT120I GGNCC 1 cut(s) 272
BmiI GGNNCC 2 cut(s) 54, 597
BmrFI CCNGG 1 cut(s) 677
BmrI ACTGGG 1 cut(s) 623
BmsI GCATC 2 cut(s) 110, 844
BmuI ACTGGG 1 cut(s) 623
BpmI CTGGAG 2 cut(s) 111, 230
Bpu10I CCTNAGC 1 cut(s) 407
BpuMI CCSGG 1 cut(s) 677
BsaAI YACGTR 1 cut(s) 830
BsaJI CCNNGG 1 cut(s) 897
BsaWI WCCGGW 1 cut(s) 868
Bse1I ACTGG 3 cut(s) 213, 443, 629
BseDI CCNNGG 1 cut(s) 897
BseGI GGATG 5 cut(s) 361, 804, 859, 917, 1039
BseMII CTCAG 2 cut(s) 398, 1020
BseNI ACTGG 3 cut(s) 213, 443, 629
BseRI GAGGAG 1 cut(s) 44
BseXI GCAGC 5 cut(s) 384, 387, 539, 580, 861
BseYI CCCAGC 1 cut(s) 218
BshFI GGCC 1 cut(s) 656
BshNI GGYRCC 1 cut(s) 595
BsiHKAI GWGCWC 1 cut(s) 242
BsiHKCI CYCGRG 1 cut(s) 844
BsiSI CCGG 3 cut(s) 50, 677, 869
BslFI GGGAC 1 cut(s) 94
BsmAI GTCTC 1 cut(s) 726
BsmFI GGGAC 1 cut(s) 94
BsmI GAATGC 1 cut(s) 250
BsnI GGCC 1 cut(s) 656
BsoBI CYCGRG 1 cut(s) 844
Bsp1286I GDGCHC 1 cut(s) 242
Bsp143I GATC 5 cut(s) 16, 97, 681, 924, 1045
BspACI CCGC 2 cut(s) 176, 404
BspANI GGCC 1 cut(s) 656
BspCNI CTCAG 2 cut(s) 399, 1019
BspHI TCATGA 1 cut(s) 297
BspLI GGNNCC 2 cut(s) 54, 597
BspPI GGATC 1 cut(s) 105
BspT107I GGYRCC 1 cut(s) 595
BsrI ACTGG 3 cut(s) 213, 443, 629
BssECI CCNNGG 1 cut(s) 897
BssMI GATC 5 cut(s) 16, 97, 681, 924, 1045
Bst4CI ACNGT 4 cut(s) 116, 346, 807, 862
Bst6I CTCTTC 1 cut(s) 218
BstBAI YACGTR 1 cut(s) 830
BstDEI CTNAG 4 cut(s) 145, 407, 953, 1006
BstDSI CCRYGG 1 cut(s) 897
BstF5I GGATG 5 cut(s) 361, 804, 859, 917, 1039
BstKTI GATC 5 cut(s) 19, 100, 684, 927, 1048
BstMAI GTCTC 1 cut(s) 726
BstMBI GATC 5 cut(s) 16, 97, 681, 924, 1045
BstMWI GCNNNNNNNGC 3 cut(s) 185, 403, 426
BstNSI RCATGY 1 cut(s) 452
BstSCI CCNGG 1 cut(s) 675
BstSNI TACGTA 1 cut(s) 830
BstV1I GCAGC 5 cut(s) 384, 387, 539, 580, 861
BstX2I RGATCY 2 cut(s) 16, 97
BstYI RGATCY 2 cut(s) 16, 97
BsuI GTATCC 1 cut(s) 406
BsuRI GGCC 1 cut(s) 656
BtgI CCRYGG 1 cut(s) 897
BtsCI GGATG 5 cut(s) 361, 804, 859, 917, 1039
BtsIMutI CAGTG 2 cut(s) 484, 867
CciI TCATGA 1 cut(s) 297
Cfr13I GGNCC 1 cut(s) 272
CseI GACGC 1 cut(s) 544
Csp6I GTAC 4 cut(s) 625, 760, 769, 827
CviAII CATG 4 cut(s) 298, 449, 922, 1085
CviQI GTAC 4 cut(s) 625, 760, 769, 827
DdeI CTNAG 4 cut(s) 145, 407, 953, 1006
DpnI GATC 5 cut(s) 18, 99, 683, 926, 1047
DpnII GATC 5 cut(s) 16, 97, 681, 924, 1045
DraI TTTAAA 1 cut(s) 949
DraIII CACNNNGTG 1 cut(s) 610
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
Eco105I TACGTA 1 cut(s) 830
Eco47I GGWCC 1 cut(s) 272
Eco88I CYCGRG 1 cut(s) 844
EcoRI GAATTC 1 cut(s) 886
FaeI CATG 4 cut(s) 301, 452, 925, 1088
FaqI GGGAC 1 cut(s) 94
FatI CATG 4 cut(s) 297, 448, 921, 1084
FbaI TGATCA 1 cut(s) 924
Fnu4HI GCNGC 7 cut(s) 177, 398, 401, 404, 553, 569, 875
FokI GGATG 5 cut(s) 368, 811, 866, 904, 1046
Fsp4HI GCNGC 7 cut(s) 177, 398, 401, 404, 553, 569, 875
GluI GCNGC 7 cut(s) 177, 398, 401, 404, 553, 569, 875
GsaI CCCAGC 1 cut(s) 222
GsuI CTGGAG 2 cut(s) 111, 230
HaeIII GGCC 1 cut(s) 656
HapII CCGG 3 cut(s) 50, 677, 869
HgaI GACGC 1 cut(s) 544
Hin1II CATG 4 cut(s) 301, 452, 925, 1088
HindIII AAGCTT 2 cut(s) 636, 748
HinfI GANTC 4 cut(s) 89, 474, 914, 1078
HpaII CCGG 3 cut(s) 50, 677, 869
HphI GGTGA 2 cut(s) 691, 858
Hpy166II GTNNAC 3 cut(s) 262, 613, 841
Hpy188I TCNGA 4 cut(s) 445, 787, 1009, 1050
Hpy188III TCNNGA 4 cut(s) 128, 139, 298, 487
Hpy8I GTNNAC 3 cut(s) 262, 613, 841
HpyAV CCTTC 4 cut(s) 323, 346, 991, 1068
HpyCH4III ACNGT 4 cut(s) 116, 346, 807, 862
HpyCH4IV ACGT 2 cut(s) 133, 829
HpyCH4V TGCA 2 cut(s) 568, 857
HpyF10VI GCNNNNNNNGC 3 cut(s) 185, 403, 426
HpyF3I CTNAG 4 cut(s) 145, 407, 953, 1006
HpySE526I ACGT 2 cut(s) 133, 829
Hsp92II CATG 4 cut(s) 301, 452, 925, 1088
Ksp22I TGATCA 1 cut(s) 924
Kzo9I GATC 5 cut(s) 16, 97, 681, 924, 1045
LmnI GCTCC 2 cut(s) 52, 871
Lsp1109I GCAGC 5 cut(s) 384, 387, 539, 580, 861
LweI GCATC 2 cut(s) 110, 844
MaeII ACGT 2 cut(s) 133, 829
MaeIII GTNAC 1 cut(s) 864
MalI GATC 5 cut(s) 18, 99, 683, 926, 1047
MboI GATC 5 cut(s) 16, 97, 681, 924, 1045
MboII GAAGA 6 cut(s) 11, 235, 385, 502, 707, 997
MfeI CAATTG 1 cut(s) 705
MflI RGATCY 2 cut(s) 16, 97
MhlI GDGCHC 1 cut(s) 242
MluCI AATT 5 cut(s) 457, 705, 822, 886, 1041
MlyI GAGTC 1 cut(s) 1087
MseI TTAA 2 cut(s) 279, 948
MslI CAYNNNNRTG 1 cut(s) 391
MspA1I CMGCKG 2 cut(s) 406, 552
MspI CCGG 3 cut(s) 50, 677, 869
MspR9I CCNGG 1 cut(s) 677
MunI CAATTG 1 cut(s) 705
Mva1269I GAATGC 1 cut(s) 250
MwoI GCNNNNNNNGC 3 cut(s) 185, 403, 426
NciI CCSGG 1 cut(s) 677
NdeII GATC 5 cut(s) 16, 97, 681, 924, 1045
NlaIII CATG 4 cut(s) 301, 452, 925, 1088
NlaIV GGNNCC 2 cut(s) 54, 597
NmuCI GTSAC 1 cut(s) 864
NspI RCATGY 1 cut(s) 452
OliI CACNNNNGTG 1 cut(s) 391
PagI TCATGA 1 cut(s) 297
PctI GAATGC 1 cut(s) 250
PfeI GAWTC 3 cut(s) 89, 474, 914
PkrI GCNGC 7 cut(s) 178, 399, 402, 405, 554, 570, 876
PleI GAGTC 1 cut(s) 1086
PpsI GAGTC 1 cut(s) 1086
Ppu21I YACGTR 1 cut(s) 830
Psp1406I AACGTT 1 cut(s) 133
PspFI CCCAGC 1 cut(s) 218
PspN4I GGNNCC 2 cut(s) 54, 597
PspPI GGNCC 1 cut(s) 272
PsuI RGATCY 2 cut(s) 16, 97
PvuII CAGCTG 1 cut(s) 552
RsaI GTAC 4 cut(s) 626, 761, 770, 828
RsaNI GTAC 4 cut(s) 625, 760, 769, 827
RseI CAYNNNNRTG 1 cut(s) 391
SaqAI TTAA 2 cut(s) 279, 948
SatI GCNGC 7 cut(s) 177, 398, 401, 404, 553, 569, 875
Sau3AI GATC 5 cut(s) 16, 97, 681, 924, 1045
Sau96I GGNCC 1 cut(s) 272
SchI GAGTC 1 cut(s) 1087
ScrFI CCNGG 1 cut(s) 677
SduI GDGCHC 1 cut(s) 242
SfaNI GCATC 2 cut(s) 110, 844
SinI GGWCC 1 cut(s) 272
SmiMI CAYNNNNRTG 1 cut(s) 391
SnaBI TACGTA 1 cut(s) 830
Sse9I AATT 5 cut(s) 457, 705, 822, 886, 1041
SsiI CCGC 2 cut(s) 176, 404
StyD4I CCNGG 1 cut(s) 675
TaaI ACNGT 4 cut(s) 116, 346, 807, 862
TaiI ACGT 2 cut(s) 136, 832
TaqI TCGA 2 cut(s) 7, 118
TasI AATT 5 cut(s) 457, 705, 822, 886, 1041
TatI WGTACW 2 cut(s) 759, 768
TauI GCSGC 2 cut(s) 179, 406
TfiI GAWTC 3 cut(s) 89, 474, 914
Tru1I TTAA 2 cut(s) 279, 948
Tru9I TTAA 2 cut(s) 279, 948
TscAI CASTG 2 cut(s) 484, 867
TseFI GTSAC 1 cut(s) 864
TseI GCWGC 5 cut(s) 397, 400, 552, 568, 874
Tsp45I GTSAC 1 cut(s) 864
TspDTI ATGAA 3 cut(s) 482, 897, 1050
TspGWI ACGGA 2 cut(s) 799, 921
TspRI CASTG 2 cut(s) 484, 867
VpaK11BI GGWCC 1 cut(s) 272
XapI RAATTY 1 cut(s) 886
XceI RCATGY 1 cut(s) 452
XcmI CCANNNNNNNNNTGG 2 cut(s) 256, 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.