Rroxscaffold_3G00229920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000269
Physical Location & Seq
Reverse (-)
14477010 .. 14478344
1335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00229920.1

Sequence Viewer

Length: 318 bp
ATGAAGAAAGTTGATGCCAACCCCATGACCAAGAGTAACATAGAGAAGATTGGTAACTTCAAAGTCAAGGGAGATCGGGAGGAGGCCGACAAAGGATTGCAAACACTAGACATTATCTACCACCATATGGAGTTCAAAGTCAAGAATGTTGTGAAGAAGTTTGCCGACTTCCGCTATTCGAGCCGGCTGAATGCCCTAAACAAGAGGGTGGTTCGATCGTGGGGTGTATGTGATCAAACACATGCAAGTGTTATGGATCCGAGTGGTGGCATCGGTTTTTGTGGTTTTGTGGAAGACTTGCAAGTTTTTGGGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.88

Weight (kDa)

9.17

Isoelectric Point (pI)

27.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 127
AciI CCGC 1 cut(s) 172
AclWI GGATC 2 cut(s) 251, 264
AfiI CCNNNNNNNGG 2 cut(s) 127, 266
AgsI TTSAA 2 cut(s) 61, 136
AlwI GGATC 2 cut(s) 251, 264
AoxI GGCC 1 cut(s) 84
BamHI GGATCC 1 cut(s) 256
BbsI GAAGAC 1 cut(s) 300
BclI TGATCA 1 cut(s) 232
BfaI CTAG 2 cut(s) 107, 316
BmiI GGNNCC 1 cut(s) 258
BmsI GCATC 2 cut(s) 4, 279
BpiI GAAGAC 1 cut(s) 300
Bsc4I CCNNNNNNNGG 2 cut(s) 127, 266
Bse118I RCCGGY 1 cut(s) 183
BseLI CCNNNNNNNGG 2 cut(s) 127, 266
BseRI GAGGAG 1 cut(s) 95
Bsh1285I CGRYCG 1 cut(s) 218
BshFI GGCC 1 cut(s) 86
BsiEI CGRYCG 1 cut(s) 218
BsiSI CCGG 1 cut(s) 184
BslI CCNNNNNNNGG 2 cut(s) 127, 266
BsmI GAATGC 1 cut(s) 196
BsnI GGCC 1 cut(s) 86
Bsp143I GATC 5 cut(s) 73, 215, 232, 256, 312
BspACI CCGC 1 cut(s) 172
BspANI GGCC 1 cut(s) 86
BspLI GGNNCC 1 cut(s) 258
BspPI GGATC 2 cut(s) 251, 264
BsrFI RCCGGY 1 cut(s) 183
BssAI RCCGGY 1 cut(s) 183
BssMI GATC 5 cut(s) 73, 215, 232, 256, 312
BstC8I GCNNGC 1 cut(s) 185
BstKTI GATC 5 cut(s) 76, 218, 235, 259, 315
BstMBI GATC 5 cut(s) 73, 215, 232, 256, 312
BstMCI CGRYCG 1 cut(s) 218
BstMWI GCNNNNNNNGC 1 cut(s) 180
BstNSI RCATGY 1 cut(s) 245
BstV2I GAAGAC 1 cut(s) 300
BstX2I RGATCY 2 cut(s) 256, 312
BstYI RGATCY 2 cut(s) 256, 312
BsuRI GGCC 1 cut(s) 86
Cac8I GCNNGC 1 cut(s) 185
Cfr10I RCCGGY 1 cut(s) 183
CviAII CATG 2 cut(s) 25, 242
CviJI RGCY 3 cut(s) 86, 183, 187
CviKI_1 RGCY 3 cut(s) 86, 183, 187
DpnI GATC 5 cut(s) 75, 217, 234, 258, 314
DpnII GATC 5 cut(s) 73, 215, 232, 256, 312
FaeI CATG 2 cut(s) 28, 245
FaiI YATR 7 cut(s) 26, 41, 126, 128, 229, 243, 254
FatI CATG 2 cut(s) 24, 241
FauNDI CATATG 1 cut(s) 126
FbaI TGATCA 1 cut(s) 232
FspBI CTAG 2 cut(s) 107, 316
HaeIII GGCC 1 cut(s) 86
HapII CCGG 1 cut(s) 184
Hin1II CATG 2 cut(s) 28, 245
HpaII CCGG 1 cut(s) 184
Hpy188I TCNGA 1 cut(s) 261
Hpy188III TCNNGA 2 cut(s) 77, 142
HpyCH4V TGCA 3 cut(s) 100, 245, 301
HpyF10VI GCNNNNNNNGC 1 cut(s) 180
Hsp92II CATG 2 cut(s) 28, 245
KroI GCCGGC 1 cut(s) 183
KroNI GCCGGC 1 cut(s) 185
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 5 cut(s) 73, 215, 232, 256, 312
LpnPI CCDG 1 cut(s) 197
LweI GCATC 2 cut(s) 4, 279
MaeI CTAG 2 cut(s) 107, 316
MaeIII GTNAC 2 cut(s) 35, 53
MalI GATC 5 cut(s) 75, 217, 234, 258, 314
MboI GATC 5 cut(s) 73, 215, 232, 256, 312
MboII GAAGA 4 cut(s) 16, 58, 166, 305
MflI RGATCY 2 cut(s) 256, 312
MnlI CCTC 3 cut(s) 73, 76, 198
MroNI GCCGGC 1 cut(s) 183
MslI CAYNNNNRTG 1 cut(s) 246
MspI CCGG 1 cut(s) 184
Mva1269I GAATGC 1 cut(s) 196
MwoI GCNNNNNNNGC 1 cut(s) 180
NaeI GCCGGC 1 cut(s) 185
NdeI CATATG 1 cut(s) 126
NdeII GATC 5 cut(s) 73, 215, 232, 256, 312
NgoMIV GCCGGC 1 cut(s) 183
NlaIII CATG 2 cut(s) 28, 245
NlaIV GGNNCC 1 cut(s) 258
NspI RCATGY 1 cut(s) 245
PctI GAATGC 1 cut(s) 196
PdiI GCCGGC 1 cut(s) 185
PflMI CCANNNNNTGG 1 cut(s) 127
Ple19I CGATCG 1 cut(s) 218
PspN4I GGNNCC 1 cut(s) 258
PsuI RGATCY 2 cut(s) 256, 312
PvuI CGATCG 1 cut(s) 218
RseI CAYNNNNRTG 1 cut(s) 246
Sau3AI GATC 5 cut(s) 73, 215, 232, 256, 312
SfaNI GCATC 2 cut(s) 4, 279
SmiMI CAYNNNNRTG 1 cut(s) 246
SsiI CCGC 1 cut(s) 172
SspMI CTAG 2 cut(s) 107, 316
TaqI TCGA 2 cut(s) 179, 214
TspDTI ATGAA 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 127
XceI RCATGY 1 cut(s) 245
XspI CTAG 2 cut(s) 107, 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.