Rroxscaffold_1G00053730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000269
Physical Location & Seq
Reverse (-)
74912466 .. 74913172
707 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00053730.1

Sequence Viewer

Length: 318 bp
ATGTCGGGAAGGAAAATTCACCACTCTATGTTGCGTGTCCTTATGGACTCCGTAGACCCCAATGCATATACTATAACTATGCATGGAAAAGAGATTGAAATGGATGCAAGTGACTTTGAAAATGTGATGGGGTTGAAGAATGCTTGGACCATTGTGGACAAGTCTTTATACCCATTGAAGCTTGGGGGGACCATGAAACGGCAAGCGCTCAAATGGGTGAACAAGCAAGGTGGTTTGCTGGATGAAAATGTTCTTGTGGCAAAGGTTGGTGATCATGTTGGTAGTGGAGATCGAGGCCAAAGCATATGGGGTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.64

Weight (kDa)

6.91

Isoelectric Point (pI)

27.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 54
AcsI RAATTY 1 cut(s) 15
AfeI AGCGCT 1 cut(s) 207
AfiI CCNNNNNNNGG 1 cut(s) 198
AgsI TTSAA 4 cut(s) 98, 119, 136, 178
AluBI AGCT 1 cut(s) 181
AluI AGCT 1 cut(s) 181
Aor51HI AGCGCT 1 cut(s) 207
AoxI GGCC 1 cut(s) 295
ApoI RAATTY 1 cut(s) 15
Asp700I GAANNNNTTC 1 cut(s) 249
AspLEI GCGC 1 cut(s) 208
AspS9I GGNCC 2 cut(s) 147, 189
AsuHPI GGTGA 3 cut(s) 11, 229, 281
AvaII GGWCC 2 cut(s) 147, 189
BccI CCATC 1 cut(s) 121
BceAI ACGGC 1 cut(s) 215
BclI TGATCA 1 cut(s) 271
BfoI RGCGCY 1 cut(s) 209
Bme18I GGWCC 2 cut(s) 147, 189
BmgT120I GGNCC 2 cut(s) 147, 189
BmiI GGNNCC 1 cut(s) 190
BmsI GCATC 1 cut(s) 94
Bsc4I CCNNNNNNNGG 1 cut(s) 198
BseGI GGATG 2 cut(s) 109, 247
BseLI CCNNNNNNNGG 1 cut(s) 198
BshFI GGCC 1 cut(s) 297
BslFI GGGAC 1 cut(s) 202
BslI CCNNNNNNNGG 1 cut(s) 198
BsmFI GGGAC 1 cut(s) 202
BsmI GAATGC 1 cut(s) 145
BsnI GGCC 1 cut(s) 297
Bsp143I GATC 2 cut(s) 271, 289
BspANI GGCC 1 cut(s) 297
BspLI GGNNCC 1 cut(s) 190
BssMI GATC 2 cut(s) 271, 289
BstC8I GCNNGC 1 cut(s) 204
BstF5I GGATG 2 cut(s) 109, 247
BstH2I RGCGCY 1 cut(s) 209
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 2 cut(s) 274, 292
BstMBI GATC 2 cut(s) 271, 289
BsuRI GGCC 1 cut(s) 297
BtsCI GGATG 2 cut(s) 109, 247
Cac8I GCNNGC 1 cut(s) 204
CfoI GCGC 1 cut(s) 208
Cfr13I GGNCC 2 cut(s) 147, 189
CspCI CAANNNNNGTGG 2 cut(s) 211, 246
CviAII CATG 3 cut(s) 83, 193, 275
CviJI RGCY 2 cut(s) 181, 297
CviKI_1 RGCY 2 cut(s) 181, 297
DpnI GATC 2 cut(s) 273, 291
DpnII GATC 2 cut(s) 271, 289
Eco47I GGWCC 2 cut(s) 147, 189
Eco47III AGCGCT 1 cut(s) 207
EcoT22I ATGCAT 2 cut(s) 67, 84
FaeI CATG 3 cut(s) 86, 196, 278
FaqI GGGAC 1 cut(s) 202
FatI CATG 3 cut(s) 82, 192, 274
FauNDI CATATG 1 cut(s) 305
FbaI TGATCA 1 cut(s) 271
FblI GTMKAC 1 cut(s) 54
FokI GGATG 2 cut(s) 116, 254
GlaI GCGC 1 cut(s) 207
HaeII RGCGCY 1 cut(s) 209
HaeIII GGCC 1 cut(s) 297
HhaI GCGC 1 cut(s) 208
Hin1II CATG 3 cut(s) 86, 196, 278
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HindIII AAGCTT 1 cut(s) 179
HinfI GANTC 1 cut(s) 47
HphI GGTGA 3 cut(s) 11, 229, 281
Hpy166II GTNNAC 3 cut(s) 55, 157, 220
Hpy188III TCNNGA 1 cut(s) 6
Hpy8I GTNNAC 3 cut(s) 55, 157, 220
HpyAV CCTTC 1 cut(s) 3
HpyCH4V TGCA 3 cut(s) 65, 82, 107
Hsp92II CATG 3 cut(s) 86, 196, 278
HspAI GCGC 1 cut(s) 206
Ksp22I TGATCA 1 cut(s) 271
Kzo9I GATC 2 cut(s) 271, 289
LpnPI CCDG 1 cut(s) 224
LweI GCATC 1 cut(s) 94
MaeIII GTNAC 1 cut(s) 110
MalI GATC 2 cut(s) 273, 291
MboI GATC 2 cut(s) 271, 289
MboII GAAGA 1 cut(s) 148
MluCI AATT 1 cut(s) 15
MlyI GAGTC 1 cut(s) 41
MnlI CCTC 1 cut(s) 287
Mph1103I ATGCAT 2 cut(s) 67, 84
MroXI GAANNNNTTC 1 cut(s) 249
MseI TTAA 1 cut(s) 316
Mva1269I GAATGC 1 cut(s) 145
NdeI CATATG 1 cut(s) 305
NdeII GATC 2 cut(s) 271, 289
NlaIII CATG 3 cut(s) 86, 196, 278
NlaIV GGNNCC 1 cut(s) 190
NmuCI GTSAC 1 cut(s) 110
NsiI ATGCAT 2 cut(s) 67, 84
PctI GAATGC 1 cut(s) 145
PdmI GAANNNNTTC 1 cut(s) 249
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
PspN4I GGNNCC 1 cut(s) 190
PspPI GGNCC 2 cut(s) 147, 189
SaqAI TTAA 1 cut(s) 316
Sau3AI GATC 2 cut(s) 271, 289
Sau96I GGNCC 2 cut(s) 147, 189
SchI GAGTC 1 cut(s) 41
SetI ASST 3 cut(s) 183, 232, 267
SfaNI GCATC 1 cut(s) 94
SinI GGWCC 2 cut(s) 147, 189
Sse9I AATT 1 cut(s) 15
TaqI TCGA 1 cut(s) 292
TasI AATT 1 cut(s) 15
Tru1I TTAA 1 cut(s) 316
Tru9I TTAA 1 cut(s) 316
TseFI GTSAC 1 cut(s) 110
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 2 cut(s) 209, 258
TspGWI ACGGA 1 cut(s) 40
VpaK11BI GGWCC 2 cut(s) 147, 189
XapI RAATTY 1 cut(s) 15
XmiI GTMKAC 1 cut(s) 54
XmnI GAANNNNTTC 1 cut(s) 249
Zsp2I ATGCAT 2 cut(s) 67, 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.