Rh2BG471400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000269
Physical Location & Seq
Reverse (-)
66525117 .. 66525956
840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG471400.1

Sequence Viewer

Length: 585 bp
ATGCCGCCGAAGGTCTACACAAAGAAGGCACCCAAAAGGGCGAAACCGAGCAGCTCCAGTAACTCTGATGGAGCATCGGCTTTGGCGACGGTCTCTGAGGTCTCGAATCAAAATTCTCCAATTTTGGAGTCCGCAAAGAAAGCTTCTGTTAACGGCGCCGAAGCGGTGGTTAAGGTACCTAAACTGAAACCTACTTCCGATGAAGCGGTAATTGAGGCACCAAAACCTACTTCCGATGAACCGGTGATTGAGGCGGAGAAACCTCCTTCCAATGATAAGCGGTCGCGAAAAGAGAAGGCACCAGAGGATTTAGAGCTGTCTGCCTCACCTGCCAAAGCTAAAGATGTGAAGGATCGAAAGAAGCTTATCATGAAAAAGAAAGCCTCCGGTCATTCCATGAGCTTTTTGAACTATCTGAACATTCAACACAAACAAATCAATCCCCCAAAACTAAACCATGATTTTCGAGTTGAGATATCTCAAAAATGGAAAGAGCTTCCACCTGAAGAGAAGGAGCAGTATGTAGTGATTGATCGATGTGGTCAATCATCAGTTTTTGAGGAAGAGATGCTTGAGTTGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

21.46

Weight (kDa)

9.1

Isoelectric Point (pI)

59.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 337
Acc36I ACCTGC 1 cut(s) 337
Acc65I GGTACC 1 cut(s) 175
AccB1I GGYRCC 5 cut(s) 28, 155, 175, 217, 298
AccI GTMKAC 1 cut(s) 15
AccII CGCG 1 cut(s) 286
AciI CCGC 6 cut(s) 5, 132, 164, 206, 254, 280
AclWI GGATC 1 cut(s) 360
AcsI RAATTY 1 cut(s) 112
AcuI CTGAAG 1 cut(s) 525
AcyI GRCGYC 1 cut(s) 156
AfaI GTAC 1 cut(s) 177
AgeI ACCGGT 1 cut(s) 241
AgsI TTSAA 2 cut(s) 409, 425
AjuI GAANNNNNNNTTGG 2 cut(s) 214, 246
AluBI AGCT 7 cut(s) 54, 143, 316, 338, 364, 402, 496
AluI AGCT 7 cut(s) 54, 143, 316, 338, 364, 402, 496
Alw26I GTCTC 2 cut(s) 97, 106
AlwI GGATC 1 cut(s) 360
ApeKI GCWGC 1 cut(s) 51
ApoI RAATTY 1 cut(s) 112
AsiGI ACCGGT 1 cut(s) 241
Asp718I GGTACC 1 cut(s) 175
AspLEI GCGC 1 cut(s) 158
AsuHPI GGTGA 2 cut(s) 256, 318
BanI GGYRCC 5 cut(s) 28, 155, 175, 217, 298
BbvI GCAGC 1 cut(s) 63
BccI CCATC 1 cut(s) 62
BceAI ACGGC 1 cut(s) 169
BcoDI GTCTC 2 cut(s) 97, 106
BfoI RGCGCY 1 cut(s) 159
BfuAI ACCTGC 1 cut(s) 337
BisI GCNGC 2 cut(s) 5, 52
BlsI GCNGC 2 cut(s) 6, 53
BmiI GGNNCC 5 cut(s) 30, 157, 177, 219, 300
BmsI GCATC 2 cut(s) 83, 558
BpmI CTGGAG 1 cut(s) 40
Bsa29I ATCGAT 1 cut(s) 535
BsaHI GRCGYC 1 cut(s) 156
BsaI GGTCTC 2 cut(s) 97, 106
BsaWI WCCGGW 2 cut(s) 241, 386
Bse118I RCCGGY 1 cut(s) 241
Bse1I ACTGG 1 cut(s) 57
BseCI ATCGAT 1 cut(s) 535
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 1 cut(s) 57
BseXI GCAGC 1 cut(s) 63
Bsh1236I CGCG 1 cut(s) 286
Bsh1285I CGRYCG 1 cut(s) 284
BshNI GGYRCC 5 cut(s) 28, 155, 175, 217, 298
BshTI ACCGGT 1 cut(s) 241
BshVI ATCGAT 1 cut(s) 535
BsiEI CGRYCG 1 cut(s) 284
BsiSI CCGG 2 cut(s) 242, 387
BsmAI GTCTC 2 cut(s) 97, 106
Bso31I GGTCTC 2 cut(s) 97, 106
Bsp143I GATC 2 cut(s) 352, 532
Bsp68I TCGCGA 1 cut(s) 286
BspACI CCGC 6 cut(s) 5, 132, 164, 206, 254, 280
BspCNI CTCAG 1 cut(s) 88
BspDI ATCGAT 1 cut(s) 535
BspFNI CGCG 1 cut(s) 286
BspHI TCATGA 1 cut(s) 369
BspLI GGNNCC 5 cut(s) 30, 157, 177, 219, 300
BspMI ACCTGC 1 cut(s) 337
BspPI GGATC 1 cut(s) 360
BspT107I GGYRCC 5 cut(s) 28, 155, 175, 217, 298
BspTNI GGTCTC 2 cut(s) 97, 106
BsrFI RCCGGY 1 cut(s) 241
BsrI ACTGG 1 cut(s) 57
BssAI RCCGGY 1 cut(s) 241
BssMI GATC 2 cut(s) 352, 532
BssNI GRCGYC 1 cut(s) 156
Bst4CI ACNGT 1 cut(s) 91
Bst6I CTCTTC 2 cut(s) 501, 558
BstACI GRCGYC 1 cut(s) 156
BstDEI CTNAG 1 cut(s) 96
BstFNI CGCG 1 cut(s) 286
BstH2I RGCGCY 1 cut(s) 159
BstHHI GCGC 1 cut(s) 158
BstKTI GATC 2 cut(s) 355, 535
BstMAI GTCTC 2 cut(s) 97, 106
BstMBI GATC 2 cut(s) 352, 532
BstMCI CGRYCG 1 cut(s) 284
BstMWI GCNNNNNNNGC 2 cut(s) 140, 329
BstUI CGCG 1 cut(s) 286
BstV1I GCAGC 1 cut(s) 63
Bsu15I ATCGAT 1 cut(s) 535
BsuTUI ATCGAT 1 cut(s) 535
BtuMI TCGCGA 1 cut(s) 286
BveI ACCTGC 1 cut(s) 337
CciI TCATGA 1 cut(s) 369
CfoI GCGC 1 cut(s) 158
Cfr10I RCCGGY 1 cut(s) 241
ClaI ATCGAT 1 cut(s) 535
Csp6I GTAC 1 cut(s) 176
CspAI ACCGGT 1 cut(s) 241
CviAII CATG 3 cut(s) 370, 397, 458
CviJI RGCY 9 cut(s) 54, 80, 143, 316, 338, 364, 383, 402, 496
CviKI_1 RGCY 9 cut(s) 54, 80, 143, 316, 338, 364, 383, 402, 496
CviQI GTAC 1 cut(s) 176
DdeI CTNAG 1 cut(s) 96
DinI GGCGCC 1 cut(s) 157
DpnI GATC 2 cut(s) 354, 534
DpnII GATC 2 cut(s) 352, 532
Eam1104I CTCTTC 2 cut(s) 501, 558
EarI CTCTTC 2 cut(s) 501, 558
EciI GGCGGA 1 cut(s) 269
Eco31I GGTCTC 2 cut(s) 97, 106
Eco32I GATATC 1 cut(s) 477
Eco57I CTGAAG 1 cut(s) 525
EcoRV GATATC 1 cut(s) 477
EgeI GGCGCC 1 cut(s) 157
EheI GGCGCC 1 cut(s) 157
FaeI CATG 3 cut(s) 373, 400, 461
FaiI YATR 4 cut(s) 371, 398, 459, 522
FalI AAGNNNNNCTT 1 cut(s) 555
FatI CATG 3 cut(s) 369, 396, 457
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 2 cut(s) 5, 52
Fsp4HI GCNGC 2 cut(s) 5, 52
GlaI GCGC 1 cut(s) 157
GluI GCNGC 2 cut(s) 5, 52
GsuI CTGGAG 1 cut(s) 40
HaeII RGCGCY 1 cut(s) 159
HapII CCGG 2 cut(s) 242, 387
HhaI GCGC 1 cut(s) 158
Hin1I GRCGYC 1 cut(s) 156
Hin1II CATG 3 cut(s) 373, 400, 461
Hin6I GCGC 1 cut(s) 156
HinP1I GCGC 1 cut(s) 156
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HindIII AAGCTT 2 cut(s) 141, 362
HinfI GANTC 2 cut(s) 106, 128
HpaI GTTAAC 1 cut(s) 151
HpaII CCGG 2 cut(s) 242, 387
HphI GGTGA 2 cut(s) 256, 318
Hpy166II GTNNAC 2 cut(s) 16, 151
Hpy188I TCNGA 5 cut(s) 67, 97, 199, 235, 417
Hpy188III TCNNGA 3 cut(s) 103, 285, 370
Hpy8I GTNNAC 2 cut(s) 16, 151
Hpy99I CGWCG 1 cut(s) 91
HpyAV CCTTC 6 cut(s) 4, 19, 276, 289, 343, 505
HpyCH4III ACNGT 1 cut(s) 91
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 329
HpyF3I CTNAG 1 cut(s) 96
Hsp92I GRCGYC 1 cut(s) 156
Hsp92II CATG 3 cut(s) 373, 400, 461
HspAI GCGC 1 cut(s) 156
KasI GGCGCC 1 cut(s) 155
KpnI GGTACC 1 cut(s) 179
KspAI GTTAAC 1 cut(s) 151
Kzo9I GATC 2 cut(s) 352, 532
LmnI GCTCC 3 cut(s) 59, 71, 514
LpnPI CCDG 6 cut(s) 70, 255, 315, 342, 400, 516
Lsp1109I GCAGC 1 cut(s) 63
LweI GCATC 2 cut(s) 83, 558
MaeIII GTNAC 1 cut(s) 59
MalI GATC 2 cut(s) 354, 534
MboI GATC 2 cut(s) 352, 532
MboII GAAGA 2 cut(s) 518, 575
MluCI AATT 3 cut(s) 112, 120, 210
Mly113I GGCGCC 1 cut(s) 156
MlyI GAGTC 1 cut(s) 137
MnlI CCTC 8 cut(s) 91, 208, 244, 273, 298, 334, 394, 553
MseI TTAA 2 cut(s) 150, 171
MspI CCGG 2 cut(s) 242, 387
MvnI CGCG 1 cut(s) 286
MwoI GCNNNNNNNGC 2 cut(s) 140, 329
NarI GGCGCC 1 cut(s) 156
NdeII GATC 2 cut(s) 352, 532
NlaIII CATG 3 cut(s) 373, 400, 461
NlaIV GGNNCC 5 cut(s) 30, 157, 177, 219, 300
NruI TCGCGA 1 cut(s) 286
PagI TCATGA 1 cut(s) 369
PaqCI CACCTGC 1 cut(s) 337
PcsI WCGNNNNNNNCGW 1 cut(s) 83
PfeI GAWTC 1 cut(s) 106
PinAI ACCGGT 1 cut(s) 241
PkrI GCNGC 2 cut(s) 6, 53
PleI GAGTC 1 cut(s) 136
PluTI GGCGCC 1 cut(s) 159
PpsI GAGTC 1 cut(s) 136
PspN4I GGNNCC 5 cut(s) 30, 157, 177, 219, 300
RruI TCGCGA 1 cut(s) 286
RsaI GTAC 1 cut(s) 177
RsaNI GTAC 1 cut(s) 176
SaqAI TTAA 2 cut(s) 150, 171
SatI GCNGC 2 cut(s) 5, 52
Sau3AI GATC 2 cut(s) 352, 532
SchI GAGTC 1 cut(s) 137
SfaNI GCATC 2 cut(s) 83, 558
SfoI GGCGCC 1 cut(s) 157
SmlI CTYRAG 1 cut(s) 572
SmoI CTYRAG 1 cut(s) 572
Sse9I AATT 3 cut(s) 112, 120, 210
SsiI CCGC 6 cut(s) 5, 132, 164, 206, 254, 280
SspDI GGCGCC 1 cut(s) 155
TaaI ACNGT 1 cut(s) 91
TaqI TCGA 4 cut(s) 104, 355, 466, 535
TasI AATT 3 cut(s) 112, 120, 210
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 1 cut(s) 106
Tru1I TTAA 2 cut(s) 150, 171
Tru9I TTAA 2 cut(s) 150, 171
TseI GCWGC 1 cut(s) 51
TspDTI ATGAA 3 cut(s) 216, 252, 386
XapI RAATTY 1 cut(s) 112
XmiI GTMKAC 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.