Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002132.1

Orthogroup ID

OG0000483

Physical Location & Seq

Genomic Coordinates Reverse (-)

35870 .. 36154

Gene Structure 285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002132.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

atggaaccacgaactctggaactaatggagcttcaaacccagcaacaaatggaactacaagcccagcaaccaaccgaggagggaggaagcacccaagcagccgggagtagtgccaacacgcctatcaggccgactactaaccggtggactcccacaccagctcaactaagaatccttcaggggctctactatgacaagggtcacaagtacccaactccagagcagattcaagagatctgtcttcatctgaaaccgtatgggcagatcgaggtatcaactaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

94

Amino Acids

10.64

Weight (kDa)

5.24

Isoelectric Point (pI)

63.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii	Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa	Rorug04G0280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	161
AfaI	GTAC	1 cut(s)	209
AgeI	ACCGGT	1 cut(s)	141
AgsI	TTSAA	2 cut(s)	35, 230
AluBI	AGCT	2 cut(s)	31, 161
AluI	AGCT	2 cut(s)	31, 161
AoxI	GGCC	1 cut(s)	128
ApeKI	GCWGC	1 cut(s)	98
AsiGI	ACCGGT	1 cut(s)	141
AsuC2I	CCSGG	1 cut(s)	103
BanII	GRGCYC	1 cut(s)	186
BbsI	GAAGAC	1 cut(s)	233
BbvI	GCAGC	1 cut(s)	110
BcnI	CCSGG	1 cut(s)	103
BglI	GCCNNNNNGGC	1 cut(s)	127
BglII	AGATCT	1 cut(s)	234
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
Bme1390I	CCNGG	1 cut(s)	103
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	103
BoxI	GACNNNNGTC	1 cut(s)	198
BpiI	GAAGAC	1 cut(s)	233
BpmI	CTGGAG	1 cut(s)	201
BpuMI	CCSGG	1 cut(s)	103
BsaJI	CCNNGG	1 cut(s)	75
BsaWI	WCCGGW	1 cut(s)	141
Bse118I	RCCGGY	1 cut(s)	141
BseDI	CCNNGG	1 cut(s)	75
BseRI	GAGGAG	1 cut(s)	92
BseXI	GCAGC	1 cut(s)	110
BseYI	CCCAGC	2 cut(s)	39, 63
BshFI	GGCC	1 cut(s)	130
BshTI	ACCGGT	1 cut(s)	141
BsiSI	CCGG	2 cut(s)	102, 142
BsnI	GGCC	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp143I	GATC	2 cut(s)	234, 264
BspANI	GGCC	1 cut(s)	130
BspLI	GGNNCC	1 cut(s)	6
BsrFI	RCCGGY	1 cut(s)	141
BssAI	RCCGGY	1 cut(s)	141
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	2 cut(s)	234, 264
Bst4CI	ACNGT	1 cut(s)	255
BstDEI	CTNAG	1 cut(s)	167
BstKTI	GATC	2 cut(s)	237, 267
BstMBI	GATC	2 cut(s)	234, 264
BstMWI	GCNNNNNNNGC	1 cut(s)	127
BstPAI	GACNNNNGTC	1 cut(s)	198
BstSCI	CCNGG	1 cut(s)	101
BstV1I	GCAGC	1 cut(s)	110
BstV2I	GAAGAC	1 cut(s)	233
BstX2I	RGATCY	1 cut(s)	234
BstYI	RGATCY	1 cut(s)	234
BsuRI	GGCC	1 cut(s)	130
Cfr10I	RCCGGY	1 cut(s)	141
Csp6I	GTAC	1 cut(s)	208
CspAI	ACCGGT	1 cut(s)	141
CviJI	RGCY	6 cut(s)	31, 62, 101, 130, 161, 184
CviKI_1	RGCY	6 cut(s)	31, 62, 101, 130, 161, 184
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	1 cut(s)	167
DpnI	GATC	2 cut(s)	236, 266
DpnII	GATC	2 cut(s)	234, 264
Eco24I	GRGCYC	1 cut(s)	186
Eco57I	CTGAAG	1 cut(s)	161
EcoT38I	GRGCYC	1 cut(s)	186
FaiI	YATR	2 cut(s)	192, 258
Fnu4HI	GCNGC	1 cut(s)	99
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	1 cut(s)	99
GluI	GCNGC	1 cut(s)	99
GsaI	CCCAGC	2 cut(s)	43, 67
GsuI	CTGGAG	1 cut(s)	201
HaeIII	GGCC	1 cut(s)	130
HapII	CCGG	2 cut(s)	102, 142
HinfI	GANTC	3 cut(s)	148, 171, 226
HpaII	CCGG	2 cut(s)	102, 142
Hpy166II	GTNNAC	1 cut(s)	147
Hpy188I	TCNGA	1 cut(s)	249
Hpy188III	TCNNGA	3 cut(s)	17, 218, 230
Hpy8I	GTNNAC	1 cut(s)	147
HpyAV	CCTTC	1 cut(s)	185
HpyCH4III	ACNGT	1 cut(s)	255
HpyF10VI	GCNNNNNNNGC	1 cut(s)	127
HpyF3I	CTNAG	1 cut(s)	167
Kzo9I	GATC	2 cut(s)	234, 264
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	9 cut(s)	2, 53, 77, 112, 115, 155, 164, 171, 231
Lsp1109I	GCAGC	1 cut(s)	110
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	2 cut(s)	236, 266
MboI	GATC	2 cut(s)	234, 264
MboII	GAAGA	1 cut(s)	233
MflI	RGATCY	1 cut(s)	234
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	1 cut(s)	280
MlyI	GAGTC	1 cut(s)	142
MnlI	CCTC	4 cut(s)	70, 73, 77, 262
MspI	CCGG	2 cut(s)	102, 142
MspR9I	CCNGG	1 cut(s)	103
MwoI	GCNNNNNNNGC	1 cut(s)	127
NciI	CCSGG	1 cut(s)	103
NdeII	GATC	2 cut(s)	234, 264
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	200
PfeI	GAWTC	2 cut(s)	171, 226
PinAI	ACCGGT	1 cut(s)	141
PkrI	GCNGC	1 cut(s)	100
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
PshAI	GACNNNNGTC	1 cut(s)	198
PspFI	CCCAGC	2 cut(s)	39, 63
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	234
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	2 cut(s)	234, 264
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	103
SduI	GDGCHC	1 cut(s)	186
SetI	ASST	3 cut(s)	33, 163, 273
Sse9I	AATT	1 cut(s)	280
StyD4I	CCNGG	1 cut(s)	101
TaaI	ACNGT	1 cut(s)	255
TaqI	TCGA	1 cut(s)	267
TasI	AATT	1 cut(s)	280
TfiI	GAWTC	2 cut(s)	171, 226
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	1 cut(s)	98
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.