Rroxscaffold_3G00239370

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000483
Physical Location & Seq
Forward (+)
29571312 .. 29572618
1307 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00239370.1

Sequence Viewer

Length: 702 bp
ATGAATTTCGCCAAAACTATTTCGAAATCCGCCCATCGGGCCTCCACCCACGCCTACGTGAGGGCCTTGATTTGGGGCAAGCCCAAGTACGGCCCACCGCCGTGGCTTATCCCTTCCGTGATTTACGGAAATCGAATCACTTTCGCTAAAAAGCCGTCCGCCGCCGCCGCCTCGAGATTCGCTCGGTCCCTTTACGCGCTCTACACGCGTCAACGCCTTTCCGTGTTTTCGGGCGACTTTAATCCAACGTGTAGATTTAATCTCGCAGATCGTCCATCCAACGGTGGAGATCTGCTCACTCGTTCTATAAATAGTCCTATCGATGATGGTGGATCCATTGATCTAAACTTTGGTTCCATTGGTTCCATTGGTGCCGATGGATCTATCGATCTAGCTTTTGGGTCAAGTGTCGACTATAATGTTGACCCATATTCCTCTTCACCCTTCAACAATGATATCGTACTACCTCCTTCGGCACAACAAGAGGACAACCTTTCATGGAACAACGAGGAGGAGATCACCAGTGGTCGAAACTCTTCCTCTCGTTCCCCGTGCACAAGTGAGGACATCCTTGGTAACTCGAAGACTACTTCCGAGGAAGGTAGCGCATACGGTTACTATTCCGTGGCTCGGGCAGTTACAATAGTGGCTCTCAAGTCTCTCTCGAGCTCAGCCTCAACCCATTCGGAGCCGCCGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

24.98

Weight (kDa)

6.83

Isoelectric Point (pI)

45.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000483)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa Rorug04G0280300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 371
AccI GTMKAC 1 cut(s) 411
AccII CGCG 2 cut(s) 197, 208
AciI CCGC 7 cut(s) 30, 98, 159, 162, 165, 168, 692
AclWI GGATC 3 cut(s) 327, 340, 388
AcsI RAATTY 1 cut(s) 4
AfaI GTAC 2 cut(s) 89, 462
AfiI CCNNNNNNNGG 6 cut(s) 36, 60, 72, 89, 281, 630
AflIII ACRYGT 2 cut(s) 206, 248
AgsI TTSAA 1 cut(s) 448
AleI CACNNNNGTG 1 cut(s) 100
AluBI AGCT 2 cut(s) 395, 669
AluI AGCT 2 cut(s) 395, 669
Alw21I GWGCWC 2 cut(s) 557, 671
Alw26I GTCTC 1 cut(s) 663
Alw44I GTGCAC 1 cut(s) 553
AlwI GGATC 3 cut(s) 327, 340, 388
Ama87I CYCGRG 3 cut(s) 172, 630, 664
AoxI GGCC 3 cut(s) 39, 63, 91
ApaLI GTGCAC 1 cut(s) 553
ApoI RAATTY 1 cut(s) 4
Asp700I GAANNNNTTC 1 cut(s) 535
AspLEI GCGC 2 cut(s) 199, 608
AspS9I GGNCC 4 cut(s) 39, 63, 92, 186
AsuHPI GGTGA 2 cut(s) 432, 511
AsuII TTCGAA 1 cut(s) 23
AvaI CYCGRG 3 cut(s) 172, 630, 664
AvaII GGWCC 1 cut(s) 186
BaeGI GKGCMC 1 cut(s) 557
BamHI GGATCC 1 cut(s) 332
BanI GGYRCC 1 cut(s) 371
BanII GRGCYC 1 cut(s) 671
BbsI GAAGAC 1 cut(s) 590
Bbv12I GWGCWC 2 cut(s) 557, 671
BccI CCATC 4 cut(s) 42, 283, 320, 371
BceAI ACGGC 3 cut(s) 85, 106, 139
BcoDI GTCTC 1 cut(s) 663
BfaI CTAG 1 cut(s) 392
BglI GCCNNNNNGGC 1 cut(s) 38
BglII AGATCT 1 cut(s) 289
BisI GCNGC 4 cut(s) 162, 165, 168, 692
BlpI GCTNAGC 1 cut(s) 670
BlsI GCNGC 4 cut(s) 163, 166, 169, 693
Bme18I GGWCC 1 cut(s) 186
BmeT110I CYCGRG 3 cut(s) 172, 630, 664
BmgT120I GGNCC 4 cut(s) 39, 63, 92, 186
BmiI GGNNCC 6 cut(s) 188, 334, 355, 364, 373, 690
BpiI GAAGAC 1 cut(s) 590
BplI GAGNNNNNCTC 4 cut(s) 166, 198, 279, 311
Bpu1102I GCTNAGC 1 cut(s) 670
Bpu14I TTCGAA 1 cut(s) 23
BpuEI CTTGAG 1 cut(s) 638
Bsa29I ATCGAT 2 cut(s) 321, 387
BsaAI YACGTR 1 cut(s) 58
BsaJI CCNNGG 4 cut(s) 101, 571, 594, 624
Bsc4I CCNNNNNNNGG 6 cut(s) 36, 60, 72, 89, 281, 630
Bse1I ACTGG 1 cut(s) 522
BseCI ATCGAT 2 cut(s) 321, 387
BseDI CCNNGG 4 cut(s) 101, 571, 594, 624
BseGI GGATG 2 cut(s) 275, 567
BseLI CCNNNNNNNGG 6 cut(s) 36, 60, 72, 89, 281, 630
BseMII CTCAG 1 cut(s) 684
BseNI ACTGG 1 cut(s) 522
BseRI GAGGAG 2 cut(s) 524, 527
BseSI GKGCMC 1 cut(s) 557
Bsh1236I CGCG 2 cut(s) 197, 208
BshFI GGCC 3 cut(s) 41, 65, 93
BshNI GGYRCC 1 cut(s) 371
BshVI ATCGAT 2 cut(s) 321, 387
BsiHKAI GWGCWC 2 cut(s) 557, 671
BsiHKCI CYCGRG 3 cut(s) 172, 630, 664
BslFI GGGAC 1 cut(s) 172
BslI CCNNNNNNNGG 6 cut(s) 36, 60, 72, 89, 281, 630
BsmAI GTCTC 1 cut(s) 663
BsmFI GGGAC 1 cut(s) 172
BsnI GGCC 3 cut(s) 41, 65, 93
BsoBI CYCGRG 3 cut(s) 172, 630, 664
Bsp119I TTCGAA 1 cut(s) 23
Bsp1286I GDGCHC 2 cut(s) 557, 671
Bsp143I GATC 7 cut(s) 268, 289, 332, 340, 380, 388, 516
Bsp1720I GCTNAGC 1 cut(s) 670
BspACI CCGC 7 cut(s) 30, 98, 159, 162, 165, 168, 692
BspANI GGCC 3 cut(s) 41, 65, 93
BspCNI CTCAG 1 cut(s) 683
BspDI ATCGAT 2 cut(s) 321, 387
BspFNI CGCG 2 cut(s) 197, 208
BspLI GGNNCC 6 cut(s) 188, 334, 355, 364, 373, 690
BspPI GGATC 3 cut(s) 327, 340, 388
BspT104I TTCGAA 1 cut(s) 23
BspT107I GGYRCC 1 cut(s) 371
BsrI ACTGG 1 cut(s) 522
BssECI CCNNGG 4 cut(s) 101, 571, 594, 624
BssMI GATC 7 cut(s) 268, 289, 332, 340, 380, 388, 516
BssT1I CCWWGG 1 cut(s) 571
Bst4CI ACNGT 2 cut(s) 284, 614
Bst6I CTCTTC 2 cut(s) 442, 541
BstBAI YACGTR 1 cut(s) 58
BstBI TTCGAA 1 cut(s) 23
BstC8I GCNNGC 1 cut(s) 80
BstDEI CTNAG 2 cut(s) 670, 699
BstDSI CCRYGG 2 cut(s) 101, 624
BstENI CCTNNNNNAGG 1 cut(s) 58
BstF5I GGATG 2 cut(s) 275, 567
BstFNI CGCG 2 cut(s) 197, 208
BstHHI GCGC 2 cut(s) 199, 608
BstKTI GATC 7 cut(s) 271, 292, 335, 343, 383, 391, 519
BstMAI GTCTC 1 cut(s) 663
BstMBI GATC 7 cut(s) 268, 289, 332, 340, 380, 388, 516
BstMWI GCNNNNNNNGC 3 cut(s) 38, 167, 205
BstSLI GKGCMC 1 cut(s) 557
BstUI CGCG 2 cut(s) 197, 208
BstV2I GAAGAC 1 cut(s) 590
BstX2I RGATCY 3 cut(s) 289, 332, 380
BstXI CCANNNNNNTGG 1 cut(s) 102
BstYI RGATCY 3 cut(s) 289, 332, 380
Bsu15I ATCGAT 2 cut(s) 321, 387
BsuRI GGCC 3 cut(s) 41, 65, 93
BsuTUI ATCGAT 2 cut(s) 321, 387
BtgI CCRYGG 2 cut(s) 101, 624
BtsCI GGATG 2 cut(s) 275, 567
BtsIMutI CAGTG 1 cut(s) 529
Cac8I GCNNGC 1 cut(s) 80
CfoI GCGC 2 cut(s) 199, 608
Cfr13I GGNCC 4 cut(s) 39, 63, 92, 186
ClaI ATCGAT 2 cut(s) 321, 387
CseI GACGC 1 cut(s) 197
Csp6I GTAC 2 cut(s) 88, 461
CviAII CATG 1 cut(s) 498
CviQI GTAC 2 cut(s) 88, 461
DdeI CTNAG 2 cut(s) 670, 699
DpnI GATC 7 cut(s) 270, 291, 334, 342, 382, 390, 518
DpnII GATC 7 cut(s) 268, 289, 332, 340, 380, 388, 516
Eam1104I CTCTTC 2 cut(s) 442, 541
EarI CTCTTC 2 cut(s) 442, 541
EciI GGCGGA 2 cut(s) 19, 148
Ecl136II GAGCTC 1 cut(s) 669
Eco130I CCWWGG 1 cut(s) 571
Eco24I GRGCYC 1 cut(s) 671
Eco32I GATATC 1 cut(s) 457
Eco47I GGWCC 1 cut(s) 186
Eco53kI GAGCTC 1 cut(s) 669
Eco88I CYCGRG 3 cut(s) 172, 630, 664
EcoICRI GAGCTC 1 cut(s) 669
EcoNI CCTNNNNNAGG 1 cut(s) 58
EcoO109I RGGNCCY 1 cut(s) 63
EcoRV GATATC 1 cut(s) 457
EcoT14I CCWWGG 1 cut(s) 571
EcoT38I GRGCYC 1 cut(s) 671
ErhI CCWWGG 1 cut(s) 571
FaeI CATG 1 cut(s) 501
FaiI YATR 5 cut(s) 308, 417, 430, 499, 610
FaqI GGGAC 1 cut(s) 172
FatI CATG 1 cut(s) 497
FblI GTMKAC 1 cut(s) 411
Fnu4HI GCNGC 4 cut(s) 162, 165, 168, 692
FokI GGATG 2 cut(s) 262, 554
FriOI GRGCYC 1 cut(s) 671
Fsp4HI GCNGC 4 cut(s) 162, 165, 168, 692
FspBI CTAG 1 cut(s) 392
GlaI GCGC 2 cut(s) 198, 607
GluI GCNGC 4 cut(s) 162, 165, 168, 692
HaeIII GGCC 3 cut(s) 41, 65, 93
HgaI GACGC 1 cut(s) 197
HhaI GCGC 2 cut(s) 199, 608
Hin1II CATG 1 cut(s) 501
Hin6I GCGC 2 cut(s) 197, 606
HinP1I GCGC 2 cut(s) 197, 606
HincII GTYRAC 3 cut(s) 212, 412, 424
HindII GTYRAC 3 cut(s) 212, 412, 424
HinfI GANTC 2 cut(s) 135, 177
HphI GGTGA 2 cut(s) 432, 511
Hpy166II GTNNAC 4 cut(s) 212, 412, 424, 555
Hpy188I TCNGA 2 cut(s) 595, 688
Hpy188III TCNNGA 2 cut(s) 174, 664
Hpy8I GTNNAC 4 cut(s) 212, 412, 424, 555
HpyAV CCTTC 4 cut(s) 123, 454, 480, 593
HpyCH4III ACNGT 2 cut(s) 284, 614
HpyCH4IV ACGT 2 cut(s) 57, 248
HpyCH4V TGCA 1 cut(s) 555
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 167, 205
HpyF3I CTNAG 2 cut(s) 670, 699
HpySE526I ACGT 2 cut(s) 57, 248
Hsp92II CATG 1 cut(s) 501
HspAI GCGC 2 cut(s) 197, 606
Kzo9I GATC 7 cut(s) 268, 289, 332, 340, 380, 388, 516
LmnI GCTCC 1 cut(s) 688
LpnPI CCDG 1 cut(s) 535
MaeI CTAG 1 cut(s) 392
MaeII ACGT 2 cut(s) 57, 248
MaeIII GTNAC 3 cut(s) 575, 614, 637
MalI GATC 7 cut(s) 270, 291, 334, 342, 382, 390, 518
MboI GATC 7 cut(s) 268, 289, 332, 340, 380, 388, 516
MboII GAAGA 3 cut(s) 429, 528, 595
MflI RGATCY 3 cut(s) 289, 332, 380
MhlI GDGCHC 2 cut(s) 557, 671
MluCI AATT 1 cut(s) 4
MluI ACGCGT 1 cut(s) 206
MmeI TCCRAC 2 cut(s) 269, 303
MroXI GAANNNNTTC 1 cut(s) 535
MseI TTAA 2 cut(s) 240, 258
MslI CAYNNNNRTG 1 cut(s) 100
MvnI CGCG 2 cut(s) 197, 208
MwoI GCNNNNNNNGC 3 cut(s) 38, 167, 205
NdeII GATC 7 cut(s) 268, 289, 332, 340, 380, 388, 516
NlaIII CATG 1 cut(s) 501
NlaIV GGNNCC 6 cut(s) 188, 334, 355, 364, 373, 690
NspV TTCGAA 1 cut(s) 23
OliI CACNNNNGTG 1 cut(s) 100
PaeR7I CTCGAG 2 cut(s) 172, 664
PcsI WCGNNNNNNNCGW 1 cut(s) 692
PdmI GAANNNNTTC 1 cut(s) 535
PfeI GAWTC 2 cut(s) 135, 177
PkrI GCNGC 4 cut(s) 163, 166, 169, 693
Ppu21I YACGTR 1 cut(s) 58
Psp124BI GAGCTC 1 cut(s) 671
PspN4I GGNNCC 6 cut(s) 188, 334, 355, 364, 373, 690
PspPI GGNCC 4 cut(s) 39, 63, 92, 186
PsuI RGATCY 3 cut(s) 289, 332, 380
RsaI GTAC 2 cut(s) 89, 462
RsaNI GTAC 2 cut(s) 88, 461
RseI CAYNNNNRTG 1 cut(s) 100
SacI GAGCTC 1 cut(s) 671
SalI GTCGAC 1 cut(s) 410
SaqAI TTAA 2 cut(s) 240, 258
SatI GCNGC 4 cut(s) 162, 165, 168, 692
Sau3AI GATC 7 cut(s) 268, 289, 332, 340, 380, 388, 516
Sau96I GGNCC 4 cut(s) 39, 63, 92, 186
SduI GDGCHC 2 cut(s) 557, 671
SetI ASST 7 cut(s) 60, 251, 397, 469, 495, 604, 671
Sfr274I CTCGAG 2 cut(s) 172, 664
SfuI TTCGAA 1 cut(s) 23
SinI GGWCC 1 cut(s) 186
SlaI CTCGAG 2 cut(s) 172, 664
SmiMI CAYNNNNRTG 1 cut(s) 100
SmlI CTYRAG 3 cut(s) 172, 653, 664
SmoI CTYRAG 3 cut(s) 172, 653, 664
Sse9I AATT 1 cut(s) 4
SsiI CCGC 7 cut(s) 30, 98, 159, 162, 165, 168, 692
SspMI CTAG 1 cut(s) 392
SstI GAGCTC 1 cut(s) 671
StyI CCWWGG 1 cut(s) 571
TaaI ACNGT 2 cut(s) 284, 614
TaiI ACGT 2 cut(s) 60, 251
TaqI TCGA 9 cut(s) 23, 133, 173, 321, 387, 411, 529, 581, 665
TaqII GACCGA 1 cut(s) 174
TasI AATT 1 cut(s) 4
TauI GCSGC 4 cut(s) 164, 167, 170, 694
TfiI GAWTC 2 cut(s) 135, 177
Tru1I TTAA 2 cut(s) 240, 258
Tru9I TTAA 2 cut(s) 240, 258
TscAI CASTG 1 cut(s) 529
TspDTI ATGAA 2 cut(s) 17, 486
TspGWI ACGGA 4 cut(s) 106, 141, 211, 613
TspRI CASTG 1 cut(s) 529
VneI GTGCAC 1 cut(s) 553
VpaK11BI GGWCC 1 cut(s) 186
XagI CCTNNNNNAGG 1 cut(s) 58
XapI RAATTY 1 cut(s) 4
XhoI CTCGAG 2 cut(s) 172, 664
XmiI GTMKAC 1 cut(s) 411
XmnI GAANNNNTTC 1 cut(s) 535
XspI CTAG 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.