Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000483

Physical Location & Seq

Genomic Coordinates Reverse (-)

35818175 .. 35818522

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00312680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGCCTGTCGGGCAGCACGGTACCCGGTGGACTCCCACACCGCCTCAACTAAGAATCCTCAAGGGCCTTTACTATGATAAGGGCTTTAAGCGTCCAACTCCCGAGCAGATTCAAGAGATCCGCCTCGATCCGAAGCGATTTGGGCCGATCGAGGACAAGAACGTCTTCTTTTGGTTCCAGAACCTCAAATCCCGAGAGAGCCAACGGATGAAGGCATTTCGGAACGTGCGGGTTGGCGGATCTCTCGATCTCAACTTTGGACCCGCAAGTTCCACAAATGAAGGTGGATCCATCGATCCGAACTTTGGTCCCACTATTCCTACGGAGTCGATGGATCCATCTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

115

Amino Acids

13.06

Weight (kDa)

9.69

Isoelectric Point (pI)

51.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	8 - 66	1.8e-06	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii	Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa	Rorug04G0280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	161
Acc65I	GGTACC	1 cut(s)	20
AccB1I	GGYRCC	1 cut(s)	20
AciI	CCGC	5 cut(s)	41, 121, 229, 237, 264
AclWI	GGATC	8 cut(s)	112, 122, 247, 282, 290, 295, 329, 342
AfaI	GTAC	1 cut(s)	22
AfiI	CCNNNNNNNGG	1 cut(s)	305
AgsI	TTSAA	1 cut(s)	113
AloI	GAACNNNNNNTCC	2 cut(s)	173, 205
AlwI	GGATC	8 cut(s)	112, 122, 247, 282, 290, 295, 329, 342
Ama87I	CYCGRG	2 cut(s)	101, 192
AoxI	GGCC	2 cut(s)	64, 143
ApeKI	GCWGC	1 cut(s)	13
Asp700I	GAANNNNTTC	1 cut(s)	164
Asp718I	GGTACC	1 cut(s)	20
AspS9I	GGNCC	4 cut(s)	64, 143, 260, 308
AsuC2I	CCSGG	1 cut(s)	25
AvaI	CYCGRG	2 cut(s)	101, 192
AvaII	GGWCC	2 cut(s)	260, 308
BamHI	GGATCC	2 cut(s)	287, 334
BanI	GGYRCC	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	157
BbvI	GCAGC	1 cut(s)	25
BccI	CCATC	3 cut(s)	299, 325, 346
BcnI	CCSGG	1 cut(s)	25
BfaI	CTAG	1 cut(s)	346
BglI	GCCNNNNNGGC	1 cut(s)	10
BisI	GCNGC	1 cut(s)	14
BlsI	GCNGC	1 cut(s)	15
Bme1390I	CCNGG	1 cut(s)	25
Bme18I	GGWCC	2 cut(s)	260, 308
BmeT110I	CYCGRG	2 cut(s)	101, 192
BmgT120I	GGNCC	4 cut(s)	64, 143, 260, 308
BmiI	GGNNCC	6 cut(s)	22, 176, 262, 289, 310, 336
BmrFI	CCNGG	1 cut(s)	25
BpiI	GAAGAC	1 cut(s)	157
BpuEI	CTTGAG	1 cut(s)	44
BpuMI	CCSGG	1 cut(s)	25
Bsa29I	ATCGAT	1 cut(s)	294
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
BseCI	ATCGAT	1 cut(s)	294
BseGI	GGATG	1 cut(s)	213
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseXI	GCAGC	1 cut(s)	25
Bsh1285I	CGRYCG	1 cut(s)	150
BshFI	GGCC	2 cut(s)	66, 145
BshNI	GGYRCC	1 cut(s)	20
BshVI	ATCGAT	1 cut(s)	294
BsiEI	CGRYCG	1 cut(s)	150
BsiHKCI	CYCGRG	2 cut(s)	101, 192
BsiSI	CCGG	1 cut(s)	25
BslFI	GGGAC	1 cut(s)	294
BslI	CCNNNNNNNGG	1 cut(s)	305
BsmFI	GGGAC	1 cut(s)	294
BsnI	GGCC	2 cut(s)	66, 145
BsoBI	CYCGRG	2 cut(s)	101, 192
Bsp143I	GATC	8 cut(s)	117, 127, 147, 239, 247, 287, 295, 334
BspACI	CCGC	5 cut(s)	41, 121, 229, 237, 264
BspANI	GGCC	2 cut(s)	66, 145
BspDI	ATCGAT	1 cut(s)	294
BspLI	GGNNCC	6 cut(s)	22, 176, 262, 289, 310, 336
BspPI	GGATC	8 cut(s)	112, 122, 247, 282, 290, 295, 329, 342
BspT107I	GGYRCC	1 cut(s)	20
BssMI	GATC	8 cut(s)	117, 127, 147, 239, 247, 287, 295, 334
Bst4CI	ACNGT	1 cut(s)	20
BstDEI	CTNAG	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	213
BstKTI	GATC	8 cut(s)	120, 130, 150, 242, 250, 290, 298, 337
BstMBI	GATC	8 cut(s)	117, 127, 147, 239, 247, 287, 295, 334
BstMCI	CGRYCG	1 cut(s)	150
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 142
BstSCI	CCNGG	1 cut(s)	23
BstV1I	GCAGC	1 cut(s)	25
BstV2I	GAAGAC	1 cut(s)	157
BstX2I	RGATCY	4 cut(s)	117, 239, 287, 334
BstYI	RGATCY	4 cut(s)	117, 239, 287, 334
Bsu15I	ATCGAT	1 cut(s)	294
BsuRI	GGCC	2 cut(s)	66, 145
BsuTUI	ATCGAT	1 cut(s)	294
BtsCI	GGATG	1 cut(s)	213
Cfr13I	GGNCC	4 cut(s)	64, 143, 260, 308
ClaI	ATCGAT	1 cut(s)	294
CseI	GACGC	1 cut(s)	80
Csp6I	GTAC	1 cut(s)	21
CviJI	RGCY	4 cut(s)	66, 84, 145, 201
CviKI_1	RGCY	4 cut(s)	66, 84, 145, 201
CviQI	GTAC	1 cut(s)	21
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	8 cut(s)	119, 129, 149, 241, 249, 289, 297, 336
DpnII	GATC	8 cut(s)	117, 127, 147, 239, 247, 287, 295, 334
DrdI	GACNNNNNNGTC	1 cut(s)	161
DseDI	GACNNNNNNGTC	1 cut(s)	161
EciI	GGCGGA	2 cut(s)	110, 252
Eco47I	GGWCC	2 cut(s)	260, 308
Eco88I	CYCGRG	2 cut(s)	101, 192
EcoO109I	RGGNCCY	1 cut(s)	64
FaiI	YATR	1 cut(s)	75
FalI	AAGNNNNNCTT	2 cut(s)	149, 181
FaqI	GGGAC	1 cut(s)	294
FauI	CCCGC	2 cut(s)	222, 271
Fnu4HI	GCNGC	1 cut(s)	14
FokI	GGATG	1 cut(s)	220
Fsp4HI	GCNGC	1 cut(s)	14
FspBI	CTAG	1 cut(s)	346
GluI	GCNGC	1 cut(s)	14
HaeIII	GGCC	2 cut(s)	66, 145
HapII	CCGG	1 cut(s)	25
HgaI	GACGC	1 cut(s)	80
HinfI	GANTC	4 cut(s)	31, 54, 109, 326
HpaII	CCGG	1 cut(s)	25
Hpy166II	GTNNAC	1 cut(s)	30
Hpy188I	TCNGA	3 cut(s)	132, 222, 300
Hpy188III	TCNNGA	5 cut(s)	101, 113, 178, 192, 245
Hpy8I	GTNNAC	1 cut(s)	30
HpyAV	CCTTC	2 cut(s)	205, 275
HpyCH4III	ACNGT	1 cut(s)	20
HpyCH4IV	ACGT	2 cut(s)	162, 225
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 142
HpyF3I	CTNAG	1 cut(s)	50
HpySE526I	ACGT	2 cut(s)	162, 225
KpnI	GGTACC	1 cut(s)	24
Kzo9I	GATC	8 cut(s)	117, 127, 147, 239, 247, 287, 295, 334
LpnPI	CCDG	3 cut(s)	18, 38, 191
Lsp1109I	GCAGC	1 cut(s)	25
MaeI	CTAG	1 cut(s)	346
MaeII	ACGT	2 cut(s)	162, 225
MalI	GATC	8 cut(s)	119, 129, 149, 241, 249, 289, 297, 336
MboI	GATC	8 cut(s)	117, 127, 147, 239, 247, 287, 295, 334
MboII	GAAGA	1 cut(s)	157
MflI	RGATCY	4 cut(s)	117, 239, 287, 334
MlyI	GAGTC	2 cut(s)	25, 335
MmeI	TCCRAC	1 cut(s)	119
MnlI	CCTC	5 cut(s)	54, 68, 134, 145, 194
MroXI	GAANNNNTTC	1 cut(s)	164
MseI	TTAA	1 cut(s)	87
MspI	CCGG	1 cut(s)	25
MspR9I	CCNGG	1 cut(s)	25
MwoI	GCNNNNNNNGC	2 cut(s)	10, 142
NciI	CCSGG	1 cut(s)	25
NdeII	GATC	8 cut(s)	117, 127, 147, 239, 247, 287, 295, 334
NlaIV	GGNNCC	6 cut(s)	22, 176, 262, 289, 310, 336
PdmI	GAANNNNTTC	1 cut(s)	164
PfeI	GAWTC	2 cut(s)	54, 109
PkrI	GCNGC	1 cut(s)	15
Ple19I	CGATCG	1 cut(s)	150
PleI	GAGTC	2 cut(s)	25, 334
PpsI	GAGTC	2 cut(s)	25, 334
PspN4I	GGNNCC	6 cut(s)	22, 176, 262, 289, 310, 336
PspPI	GGNCC	4 cut(s)	64, 143, 260, 308
PsuI	RGATCY	4 cut(s)	117, 239, 287, 334
PvuI	CGATCG	1 cut(s)	150
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	1 cut(s)	14
Sau3AI	GATC	8 cut(s)	117, 127, 147, 239, 247, 287, 295, 334
Sau96I	GGNCC	4 cut(s)	64, 143, 260, 308
SchI	GAGTC	2 cut(s)	25, 335
ScrFI	CCNGG	1 cut(s)	25
SetI	ASST	4 cut(s)	165, 186, 228, 286
SinI	GGWCC	2 cut(s)	260, 308
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
SsiI	CCGC	5 cut(s)	41, 121, 229, 237, 264
SspMI	CTAG	1 cut(s)	346
StyD4I	CCNGG	1 cut(s)	23
TaaI	ACNGT	1 cut(s)	20
TaiI	ACGT	2 cut(s)	165, 228
TaqI	TCGA	5 cut(s)	126, 150, 246, 294, 329
TfiI	GAWTC	2 cut(s)	54, 109
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TseI	GCWGC	1 cut(s)	13
TspDTI	ATGAA	2 cut(s)	224, 294
TspGWI	ACGGA	2 cut(s)	220, 338
VpaK11BI	GGWCC	2 cut(s)	260, 308
XmnI	GAANNNNTTC	1 cut(s)	164
XspI	CTAG	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.