Rroxscaffold_166G00440820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000166
OG0000483
Physical Location & Seq
Reverse (-)
128372 .. 131040
2669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_166G00440820.1

Sequence Viewer

Length: 714 bp
ATGGAGCCAAAGCCGATCATCAAATCCGGGAAGACCGGTCTCCTCATAATTGAGCTCCCGAATTCTCCTCGGCACCTCGTTGTAGACCTCGAGCTTCGCCTGCGGTGGCAAGGCTGCGCTGCGCCGCGACGAGAACGCGGCGGCTCTCGCCGCCGTAGCTCTCCCGGTCCTCGTCGATCGCCATTGCAGGCTCGCGGTGAATCCGACTGCGGATTTGAAGCTAGTGATGAGGACTCTCTCATTTGCATAGCATATTCTCATTTATCGGTTTGTGCACGCAATGCTCGAACAGCGGGGCCCTTGAGTTCGGCGGATGAAGGTGGATCCATTGCTCCGAACTTTGGTTCCGCTAATCCAATAGGTGCCGATAGATCCGTCGATCTATCTTTTGGGTCAAACGTCAACTATCATGTTGACCCATACTCCACTTCACCTTTCAACAACAACAACGTACTACCTCCTTCCGCACAACGGGAGGGCAACTTTCCATGGAACAACGAGGAGGAGATCGGCAGGAGATCGAAACTCTTCCTCTCGTTCCCCGTGCATAGGGAGGACATCTTTGGTAACCCCGAGGACTACTTCGAGGAGGAAGGTAGCGCATACGGTTACTATCCCGGTGGCTCGAGTCGTCACAACGGTGGCTCTCAAGTCTCTCTTGAGCTCAGCCTCAACCCCCAACCGGAGCCACCGACTTATCTTAGTATAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

237

Amino Acids

25.87

Weight (kDa)

5.6

Isoelectric Point (pI)

69.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000483)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa Rorug04G0280300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 72, 362
AccI GTMKAC 1 cut(s) 84
AccII CGCG 3 cut(s) 127, 138, 195
AclWI GGATC 3 cut(s) 318, 331, 366
AcsI RAATTY 1 cut(s) 61
AfaI GTAC 1 cut(s) 453
AfiI CCNNNNNNNGG 4 cut(s) 341, 471, 549, 682
AgeI ACCGGT 1 cut(s) 35
AgsI TTSAA 2 cut(s) 218, 439
AleI CACNNNNGTG 1 cut(s) 639
AloI GAACNNNNNNTCC 2 cut(s) 329, 361
AluBI AGCT 5 cut(s) 55, 94, 159, 221, 664
AluI AGCT 5 cut(s) 55, 94, 159, 221, 664
Alw21I GWGCWC 3 cut(s) 57, 277, 666
Alw26I GTCTC 2 cut(s) 44, 658
Alw44I GTGCAC 1 cut(s) 273
AlwI GGATC 3 cut(s) 318, 331, 366
Ama87I CYCGRG 3 cut(s) 89, 572, 625
AoxI GGCC 1 cut(s) 296
ApaI GGGCCC 1 cut(s) 300
ApaLI GTGCAC 1 cut(s) 273
ApeKI GCWGC 2 cut(s) 114, 119
ApoI RAATTY 1 cut(s) 61
ArsI GACNNNNNNTTYG 2 cut(s) 197, 229
AsiGI ACCGGT 1 cut(s) 35
Asp700I GAANNNNTTC 1 cut(s) 527
AspLEI GCGC 3 cut(s) 119, 124, 602
AspS9I GGNCC 3 cut(s) 167, 296, 297
AsuC2I CCSGG 3 cut(s) 28, 165, 618
AsuHPI GGTGA 2 cut(s) 209, 423
AvaI CYCGRG 3 cut(s) 89, 572, 625
AvaII GGWCC 1 cut(s) 167
BaeGI GKGCMC 2 cut(s) 277, 300
BamHI GGATCC 1 cut(s) 323
BanI GGYRCC 2 cut(s) 72, 362
BanII GRGCYC 3 cut(s) 57, 300, 666
BbsI GAAGAC 1 cut(s) 38
Bbv12I GWGCWC 3 cut(s) 57, 277, 666
BbvI GCAGC 2 cut(s) 101, 106
BceAI ACGGC 1 cut(s) 138
BcnI CCSGG 3 cut(s) 28, 165, 618
BcoDI GTCTC 2 cut(s) 44, 658
BfaI CTAG 1 cut(s) 222
BisI GCNGC 6 cut(s) 115, 120, 125, 139, 142, 151
BlpI GCTNAGC 1 cut(s) 665
BlsI GCNGC 6 cut(s) 116, 121, 126, 140, 143, 152
Bme1390I CCNGG 3 cut(s) 28, 165, 618
Bme18I GGWCC 1 cut(s) 167
BmeT110I CYCGRG 3 cut(s) 89, 572, 625
BmgT120I GGNCC 3 cut(s) 167, 296, 297
BmiI GGNNCC 8 cut(s) 6, 74, 297, 298, 325, 346, 364, 687
BmrFI CCNGG 3 cut(s) 28, 165, 618
BpiI GAAGAC 1 cut(s) 38
Bpu1102I GCTNAGC 1 cut(s) 665
BpuEI CTTGAG 3 cut(s) 322, 633, 680
BpuMI CCSGG 3 cut(s) 28, 165, 618
BsaI GGTCTC 1 cut(s) 44
BsaJI CCNNGG 3 cut(s) 68, 488, 573
BsaWI WCCGGW 2 cut(s) 35, 682
BsaXI ACNNNNNCTCC 2 cut(s) 407, 437
Bsc4I CCNNNNNNNGG 4 cut(s) 341, 471, 549, 682
Bse118I RCCGGY 1 cut(s) 35
Bse3DI GCAATG 3 cut(s) 182, 286, 327
BseDI CCNNGG 3 cut(s) 68, 488, 573
BseGI GGATG 1 cut(s) 319
BseLI CCNNNNNNNGG 4 cut(s) 341, 471, 549, 682
BseMI GCAATG 3 cut(s) 182, 286, 327
BseMII CTCAG 1 cut(s) 679
BseRI GAGGAG 5 cut(s) 32, 57, 515, 518, 602
BseSI GKGCMC 2 cut(s) 277, 300
BseXI GCAGC 2 cut(s) 101, 106
Bsh1236I CGCG 3 cut(s) 127, 138, 195
Bsh1285I CGRYCG 1 cut(s) 179
BshFI GGCC 1 cut(s) 298
BshNI GGYRCC 2 cut(s) 72, 362
BshTI ACCGGT 1 cut(s) 35
BsiEI CGRYCG 1 cut(s) 179
BsiHKAI GWGCWC 3 cut(s) 57, 277, 666
BsiHKCI CYCGRG 3 cut(s) 89, 572, 625
BsiSI CCGG 5 cut(s) 27, 36, 165, 618, 683
BslI CCNNNNNNNGG 4 cut(s) 341, 471, 549, 682
BsmAI GTCTC 2 cut(s) 44, 658
BsnI GGCC 1 cut(s) 298
Bso31I GGTCTC 1 cut(s) 44
BsoBI CYCGRG 3 cut(s) 89, 572, 625
Bsp120I GGGCCC 1 cut(s) 296
Bsp1286I GDGCHC 4 cut(s) 57, 277, 300, 666
Bsp143I GATC 7 cut(s) 15, 176, 323, 371, 379, 507, 518
Bsp1720I GCTNAGC 1 cut(s) 665
Bsp19I CCATGG 1 cut(s) 488
BspANI GGCC 1 cut(s) 298
BspCNI CTCAG 1 cut(s) 678
BspFNI CGCG 3 cut(s) 127, 138, 195
BspLI GGNNCC 8 cut(s) 6, 74, 297, 298, 325, 346, 364, 687
BspPI GGATC 3 cut(s) 318, 331, 366
BspT107I GGYRCC 2 cut(s) 72, 362
BspTNI GGTCTC 1 cut(s) 44
BsrDI GCAATG 3 cut(s) 182, 286, 327
BsrFI RCCGGY 1 cut(s) 35
BssAI RCCGGY 1 cut(s) 35
BssECI CCNNGG 3 cut(s) 68, 488, 573
BssMI GATC 7 cut(s) 15, 176, 323, 371, 379, 507, 518
BssT1I CCWWGG 1 cut(s) 488
Bst4CI ACNGT 2 cut(s) 608, 641
Bst6I CTCTTC 1 cut(s) 533
BstAPI GCANNNNNTGC 1 cut(s) 281
BstC8I GCNNGC 4 cut(s) 101, 189, 193, 277
BstDEI CTNAG 2 cut(s) 665, 701
BstDSI CCRYGG 1 cut(s) 488
BstEII GGTNACC 1 cut(s) 566
BstF5I GGATG 1 cut(s) 319
BstFNI CGCG 3 cut(s) 127, 138, 195
BstHHI GCGC 3 cut(s) 119, 124, 602
BstKTI GATC 7 cut(s) 18, 179, 326, 374, 382, 510, 521
BstMAI GTCTC 2 cut(s) 44, 658
BstMBI GATC 7 cut(s) 15, 176, 323, 371, 379, 507, 518
BstMCI CGRYCG 1 cut(s) 179
BstMWI GCNNNNNNNGC 6 cut(s) 100, 147, 150, 156, 281, 290
BstPI GGTNACC 1 cut(s) 566
BstSCI CCNGG 3 cut(s) 26, 163, 616
BstSLI GKGCMC 2 cut(s) 277, 300
BstUI CGCG 3 cut(s) 127, 138, 195
BstV1I GCAGC 2 cut(s) 101, 106
BstV2I GAAGAC 1 cut(s) 38
BstX2I RGATCY 2 cut(s) 323, 371
BstYI RGATCY 2 cut(s) 323, 371
BsuRI GGCC 1 cut(s) 298
BtgI CCRYGG 1 cut(s) 488
BtsCI GGATG 1 cut(s) 319
Cac8I GCNNGC 4 cut(s) 101, 189, 193, 277
CfoI GCGC 3 cut(s) 119, 124, 602
Cfr10I RCCGGY 1 cut(s) 35
Cfr13I GGNCC 3 cut(s) 167, 296, 297
Csp6I GTAC 1 cut(s) 452
CspAI ACCGGT 1 cut(s) 35
CviAII CATG 2 cut(s) 410, 489
CviQI GTAC 1 cut(s) 452
DdeI CTNAG 2 cut(s) 665, 701
DpnI GATC 7 cut(s) 17, 178, 325, 373, 381, 509, 520
DpnII GATC 7 cut(s) 15, 176, 323, 371, 379, 507, 518
Eam1104I CTCTTC 1 cut(s) 533
EarI CTCTTC 1 cut(s) 533
EciI GGCGGA 1 cut(s) 326
Ecl136II GAGCTC 2 cut(s) 55, 664
Eco130I CCWWGG 1 cut(s) 488
Eco24I GRGCYC 3 cut(s) 57, 300, 666
Eco31I GGTCTC 1 cut(s) 44
Eco47I GGWCC 1 cut(s) 167
Eco53kI GAGCTC 2 cut(s) 55, 664
Eco88I CYCGRG 3 cut(s) 89, 572, 625
Eco91I GGTNACC 1 cut(s) 566
EcoICRI GAGCTC 2 cut(s) 55, 664
EcoO109I RGGNCCY 2 cut(s) 296, 297
EcoO65I GGTNACC 1 cut(s) 566
EcoRI GAATTC 1 cut(s) 61
EcoT14I CCWWGG 1 cut(s) 488
EcoT38I GRGCYC 3 cut(s) 57, 300, 666
ErhI CCWWGG 1 cut(s) 488
FaeI CATG 2 cut(s) 413, 492
FalI AAGNNNNNCTT 2 cut(s) 642, 674
FatI CATG 2 cut(s) 409, 488
FauI CCCGC 1 cut(s) 286
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 6 cut(s) 115, 120, 125, 139, 142, 151
FokI GGATG 1 cut(s) 326
FriOI GRGCYC 3 cut(s) 57, 300, 666
Fsp4HI GCNGC 6 cut(s) 115, 120, 125, 139, 142, 151
FspBI CTAG 1 cut(s) 222
GlaI GCGC 3 cut(s) 118, 123, 601
GluI GCNGC 6 cut(s) 115, 120, 125, 139, 142, 151
HaeIII GGCC 1 cut(s) 298
HapII CCGG 5 cut(s) 27, 36, 165, 618, 683
HhaI GCGC 3 cut(s) 119, 124, 602
Hin1II CATG 2 cut(s) 413, 492
Hin6I GCGC 3 cut(s) 117, 122, 600
HinP1I GCGC 3 cut(s) 117, 122, 600
HincII GTYRAC 2 cut(s) 403, 415
HindII GTYRAC 2 cut(s) 403, 415
HinfI GANTC 3 cut(s) 200, 233, 628
HpaII CCGG 5 cut(s) 27, 36, 165, 618, 683
HphI GGTGA 2 cut(s) 209, 423
Hpy166II GTNNAC 4 cut(s) 85, 275, 403, 415
Hpy188I TCNGA 2 cut(s) 205, 336
Hpy188III TCNNGA 2 cut(s) 58, 659
Hpy8I GTNNAC 4 cut(s) 85, 275, 403, 415
Hpy99I CGWCG 3 cut(s) 132, 177, 380
HpyAV CCTTC 3 cut(s) 311, 471, 587
HpyCH4III ACNGT 2 cut(s) 608, 641
HpyCH4IV ACGT 2 cut(s) 399, 450
HpyCH4V TGCA 4 cut(s) 187, 246, 275, 547
HpyF10VI GCNNNNNNNGC 6 cut(s) 100, 147, 150, 156, 281, 290
HpyF3I CTNAG 2 cut(s) 665, 701
HpySE526I ACGT 2 cut(s) 399, 450
Hsp92II CATG 2 cut(s) 413, 492
HspAI GCGC 3 cut(s) 117, 122, 600
Kzo9I GATC 7 cut(s) 15, 176, 323, 371, 379, 507, 518
LmnI GCTCC 4 cut(s) 4, 60, 337, 685
LpnPI CCDG 8 cut(s) 40, 49, 113, 173, 178, 499, 631, 696
Lsp1109I GCAGC 2 cut(s) 101, 106
MaeI CTAG 1 cut(s) 222
MaeII ACGT 2 cut(s) 399, 450
MaeIII GTNAC 3 cut(s) 566, 608, 632
MalI GATC 7 cut(s) 17, 178, 325, 373, 381, 509, 520
MboI GATC 7 cut(s) 15, 176, 323, 371, 379, 507, 518
MboII GAAGA 2 cut(s) 43, 520
MflI RGATCY 2 cut(s) 323, 371
MhlI GDGCHC 4 cut(s) 57, 277, 300, 666
MluCI AATT 2 cut(s) 48, 61
MlyI GAGTC 2 cut(s) 227, 637
MmeI TCCRAC 1 cut(s) 228
MroXI GAANNNNTTC 1 cut(s) 527
MslI CAYNNNNRTG 1 cut(s) 639
MspA1I CMGCKG 1 cut(s) 293
MspI CCGG 5 cut(s) 27, 36, 165, 618, 683
MspR9I CCNGG 3 cut(s) 28, 165, 618
MteI GCGCNGCGC 1 cut(s) 120
MvnI CGCG 3 cut(s) 127, 138, 195
MwoI GCNNNNNNNGC 6 cut(s) 100, 147, 150, 156, 281, 290
NciI CCSGG 3 cut(s) 28, 165, 618
NcoI CCATGG 1 cut(s) 488
NdeII GATC 7 cut(s) 15, 176, 323, 371, 379, 507, 518
NlaIII CATG 2 cut(s) 413, 492
NlaIV GGNNCC 8 cut(s) 6, 74, 297, 298, 325, 346, 364, 687
NmeAIII GCCGAG 1 cut(s) 49
NmuCI GTSAC 1 cut(s) 632
OliI CACNNNNGTG 1 cut(s) 639
PaeR7I CTCGAG 2 cut(s) 89, 625
PcsI WCGNNNNNNNCGW 1 cut(s) 283
PdmI GAANNNNTTC 1 cut(s) 527
PfeI GAWTC 1 cut(s) 200
PfoI TCCNGGA 1 cut(s) 26
PinAI ACCGGT 1 cut(s) 35
PkrI GCNGC 6 cut(s) 116, 121, 126, 140, 143, 152
Ple19I CGATCG 1 cut(s) 179
PleI GAGTC 2 cut(s) 227, 636
PpsI GAGTC 2 cut(s) 227, 636
Psp124BI GAGCTC 2 cut(s) 57, 666
PspEI GGTNACC 1 cut(s) 566
PspN4I GGNNCC 8 cut(s) 6, 74, 297, 298, 325, 346, 364, 687
PspOMI GGGCCC 1 cut(s) 296
PspPI GGNCC 3 cut(s) 167, 296, 297
PspXI VCTCGAGB 2 cut(s) 89, 625
PsuI RGATCY 2 cut(s) 323, 371
PvuI CGATCG 1 cut(s) 179
RsaI GTAC 1 cut(s) 453
RsaNI GTAC 1 cut(s) 452
RseI CAYNNNNRTG 1 cut(s) 639
SacI GAGCTC 2 cut(s) 57, 666
SatI GCNGC 6 cut(s) 115, 120, 125, 139, 142, 151
Sau3AI GATC 7 cut(s) 15, 176, 323, 371, 379, 507, 518
Sau96I GGNCC 3 cut(s) 167, 296, 297
SchI GAGTC 2 cut(s) 227, 637
ScrFI CCNGG 3 cut(s) 28, 165, 618
SduI GDGCHC 4 cut(s) 57, 277, 300, 666
Sfr274I CTCGAG 2 cut(s) 89, 625
SinI GGWCC 1 cut(s) 167
SlaI CTCGAG 2 cut(s) 89, 625
SmiMI CAYNNNNRTG 1 cut(s) 639
SmlI CTYRAG 5 cut(s) 89, 301, 625, 648, 659
SmoI CTYRAG 5 cut(s) 89, 301, 625, 648, 659
Sse9I AATT 2 cut(s) 48, 61
SspMI CTAG 1 cut(s) 222
SstI GAGCTC 2 cut(s) 57, 666
StyD4I CCNGG 3 cut(s) 26, 163, 616
StyI CCWWGG 1 cut(s) 488
TaaI ACNGT 2 cut(s) 608, 641
TaiI ACGT 2 cut(s) 402, 453
TaqI TCGA 7 cut(s) 90, 175, 286, 378, 521, 585, 626
TasI AATT 2 cut(s) 48, 61
TauI GCSGC 4 cut(s) 127, 141, 144, 153
TfiI GAWTC 1 cut(s) 200
TseFI GTSAC 1 cut(s) 632
TseI GCWGC 2 cut(s) 114, 119
Tsp45I GTSAC 1 cut(s) 632
TspDTI ATGAA 1 cut(s) 330
TspGWI ACGGA 1 cut(s) 364
VneI GTGCAC 1 cut(s) 273
VpaK11BI GGWCC 1 cut(s) 167
XapI RAATTY 1 cut(s) 61
XhoI CTCGAG 2 cut(s) 89, 625
XmiI GTMKAC 1 cut(s) 84
XmnI GAANNNNTTC 1 cut(s) 527
XspI CTAG 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.