Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000483

Physical Location & Seq

Genomic Coordinates Reverse (-)

24459503 .. 24460869

Gene Structure 1367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00102340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGAATTTCGCCAAAACTATTTCAAAAACTCGGCCCATAGGACCTCCACTCACGGCTACGTTAATAGAGCTTCAAACCCAGAACAAATGGAACTGCAAGCCCAAAGAACCACCGAGGAGGAGGAAGCAACCAAGCGGCCGGGAGTTGTGCCAACACGCCCGTCGGCGACCTAATACCTCAGTGGACTCCCACACCGCCTCAACTAAGAATCTTCAAGGGGCTTTACTACGACAAGGATCTCAAGAACCCAACTCCGAGCAGATTCAAGAGATCTGTCTCAATCGAAACAAGTATGGGCAAATCGAGGACAAGAACGTCTTCTTTTGGTTCCGAACCTCAAATCTCGAGAGGCGGCGAGATGAAAGCAATTCGGAACGTTCGAGTTGGTGGATCTCTCGATCTCAACTTTGGACCCGCCGGTTCTGCGATGAAGGTGGATCCATTGATCTAAACTTTGGTTCCATTAATTCCACTGGTGCCGATGGATCTATCGATCTAGCTTTTGGGTCAAGTGTCGACTATCATGTTGACCCAAATTCCACTTCACCCTTCAACAATAACATCGTACTACCTCCTTCAAAGACAACAGAGGACAACCTTTCATGGAACAACGAGGAGGAGATTAGCGAGGAGATCGAAACTCTTCCTCTATTCCCCGTGCACAGTGAGGACGTCCTTGGTAACCCGAAGACTACTTCCGAGGAAGGTAGCGCATACGGTTACTATTCGGTGGCTCGGTTAGTTACAACGGTGGCTCTCAAGTCTCTCTTGAGCTCAGCCTCAACCCATCGGAGCCGCCGACTTAGCTTAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

271

Amino Acids

30.63

Weight (kDa)

8.33

Isoelectric Point (pI)

74.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii	Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa	Rorug04G0280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	314
AatII	GACGTC	1 cut(s)	675
AccB1I	GGYRCC	1 cut(s)	476
AccI	GTMKAC	1 cut(s)	516
AciI	CCGC	5 cut(s)	135, 195, 352, 415, 796
AclI	AACGTT	1 cut(s)	376
AclWI	GGATC	5 cut(s)	244, 398, 432, 445, 493
AcoI	YGGCCR	1 cut(s)	136
AcsI	RAATTY	2 cut(s)	4, 535
AcyI	GRCGYC	1 cut(s)	672
AfaI	GTAC	1 cut(s)	567
AgsI	TTSAA	6 cut(s)	24, 74, 215, 266, 553, 579
AjuI	GAANNNNNNNTTGG	2 cut(s)	526, 558
AluBI	AGCT	4 cut(s)	70, 500, 774, 807
AluI	AGCT	4 cut(s)	70, 500, 774, 807
Alw21I	GWGCWC	2 cut(s)	663, 776
Alw26I	GTCTC	2 cut(s)	281, 768
Alw44I	GTGCAC	1 cut(s)	659
AlwI	GGATC	5 cut(s)	244, 398, 432, 445, 493
Ama87I	CYCGRG	1 cut(s)	344
AoxI	GGCC	2 cut(s)	32, 136
ApaLI	GTGCAC	1 cut(s)	659
ApoI	RAATTY	2 cut(s)	4, 535
AseI	ATTAAT	1 cut(s)	465
Asp700I	GAANNNNTTC	2 cut(s)	317, 642
AspLEI	GCGC	1 cut(s)	713
AspS9I	GGNCC	3 cut(s)	33, 41, 411
AsuC2I	CCSGG	1 cut(s)	140
AsuHPI	GGTGA	1 cut(s)	537
AvaI	CYCGRG	1 cut(s)	344
AvaII	GGWCC	2 cut(s)	41, 411
BaeGI	GKGCMC	1 cut(s)	663
BamHI	GGATCC	1 cut(s)	437
BanI	GGYRCC	1 cut(s)	476
BanII	GRGCYC	1 cut(s)	776
BbsI	GAAGAC	2 cut(s)	310, 695
Bbv12I	GWGCWC	2 cut(s)	663, 776
BccI	CCATC	2 cut(s)	476, 795
BceAI	ACGGC	1 cut(s)	69
BcnI	CCSGG	1 cut(s)	140
BcoDI	GTCTC	2 cut(s)	281, 768
BfaI	CTAG	1 cut(s)	497
BglII	AGATCT	1 cut(s)	270
BisI	GCNGC	3 cut(s)	136, 353, 796
BlpI	GCTNAGC	1 cut(s)	775
BlsI	GCNGC	3 cut(s)	137, 354, 797
Bme1390I	CCNGG	1 cut(s)	140
Bme18I	GGWCC	2 cut(s)	41, 411
BmeT110I	CYCGRG	1 cut(s)	344
BmgT120I	GGNCC	3 cut(s)	33, 41, 411
BmiI	GGNNCC	6 cut(s)	329, 413, 439, 460, 478, 794
BmrFI	CCNGG	1 cut(s)	140
BpiI	GAAGAC	2 cut(s)	310, 695
Bpu1102I	GCTNAGC	1 cut(s)	775
BpuEI	CTTGAG	3 cut(s)	225, 743, 790
BpuMI	CCSGG	1 cut(s)	140
Bsa29I	ATCGAT	1 cut(s)	492
BsaHI	GRCGYC	1 cut(s)	672
BsaJI	CCNNGG	3 cut(s)	113, 676, 699
Bse118I	RCCGGY	1 cut(s)	417
Bse1I	ACTGG	1 cut(s)	478
BseCI	ATCGAT	1 cut(s)	492
BseDI	CCNNGG	3 cut(s)	113, 676, 699
BseMII	CTCAG	2 cut(s)	192, 789
BseNI	ACTGG	1 cut(s)	478
BseRI	GAGGAG	5 cut(s)	130, 133, 629, 632, 644
BseSI	GKGCMC	1 cut(s)	663
BseX3I	CGGCCG	1 cut(s)	136
Bsh1285I	CGRYCG	1 cut(s)	139
BshFI	GGCC	2 cut(s)	34, 138
BshNI	GGYRCC	1 cut(s)	476
BshVI	ATCGAT	1 cut(s)	492
BsiEI	CGRYCG	1 cut(s)	139
BsiHKAI	GWGCWC	2 cut(s)	663, 776
BsiHKCI	CYCGRG	1 cut(s)	344
BsiSI	CCGG	2 cut(s)	139, 418
BsmAI	GTCTC	2 cut(s)	281, 768
BsnI	GGCC	2 cut(s)	34, 138
BsoBI	CYCGRG	1 cut(s)	344
Bsp1286I	GDGCHC	2 cut(s)	663, 776
Bsp143I	GATC	9 cut(s)	236, 270, 390, 398, 437, 445, 485, 493, 633
Bsp1720I	GCTNAGC	1 cut(s)	775
BspACI	CCGC	5 cut(s)	135, 195, 352, 415, 796
BspANI	GGCC	2 cut(s)	34, 138
BspCNI	CTCAG	2 cut(s)	191, 788
BspDI	ATCGAT	1 cut(s)	492
BspLI	GGNNCC	6 cut(s)	329, 413, 439, 460, 478, 794
BspPI	GGATC	5 cut(s)	244, 398, 432, 445, 493
BspT107I	GGYRCC	1 cut(s)	476
BsrFI	RCCGGY	1 cut(s)	417
BsrI	ACTGG	1 cut(s)	478
BssAI	RCCGGY	1 cut(s)	417
BssECI	CCNNGG	3 cut(s)	113, 676, 699
BssMI	GATC	9 cut(s)	236, 270, 390, 398, 437, 445, 485, 493, 633
BssNI	GRCGYC	1 cut(s)	672
BssT1I	CCWWGG	1 cut(s)	676
Bst4CI	ACNGT	3 cut(s)	665, 719, 751
Bst6I	CTCTTC	1 cut(s)	648
BstACI	GRCGYC	1 cut(s)	672
BstC8I	GCNNGC	1 cut(s)	98
BstDEI	CTNAG	5 cut(s)	178, 204, 775, 803, 808
BstEII	GGTNACC	1 cut(s)	680
BstHHI	GCGC	1 cut(s)	713
BstKTI	GATC	9 cut(s)	239, 273, 393, 401, 440, 448, 488, 496, 636
BstMAI	GTCTC	2 cut(s)	281, 768
BstMBI	GATC	9 cut(s)	236, 270, 390, 398, 437, 445, 485, 493, 633
BstMCI	CGRYCG	1 cut(s)	139
BstMWI	GCNNNNNNNGC	2 cut(s)	423, 804
BstPI	GGTNACC	1 cut(s)	680
BstSCI	CCNGG	1 cut(s)	138
BstSLI	GKGCMC	1 cut(s)	663
BstV2I	GAAGAC	2 cut(s)	310, 695
BstX2I	RGATCY	5 cut(s)	236, 270, 390, 437, 485
BstYI	RGATCY	5 cut(s)	236, 270, 390, 437, 485
BstZI	CGGCCG	1 cut(s)	136
Bsu15I	ATCGAT	1 cut(s)	492
BsuRI	GGCC	2 cut(s)	34, 138
BsuTUI	ATCGAT	1 cut(s)	492
BtgZI	GCGATG	1 cut(s)	441
BtsIMutI	CAGTG	3 cut(s)	186, 471, 670
Cac8I	GCNNGC	1 cut(s)	98
CfoI	GCGC	1 cut(s)	713
Cfr10I	RCCGGY	1 cut(s)	417
Cfr13I	GGNCC	3 cut(s)	33, 41, 411
ClaI	ATCGAT	1 cut(s)	492
Csp6I	GTAC	1 cut(s)	566
CviAII	CATG	2 cut(s)	524, 603
CviQI	GTAC	1 cut(s)	566
DdeI	CTNAG	5 cut(s)	178, 204, 775, 803, 808
DpnI	GATC	9 cut(s)	238, 272, 392, 400, 439, 447, 487, 495, 635
DpnII	GATC	9 cut(s)	236, 270, 390, 398, 437, 445, 485, 493, 633
DrdI	GACNNNNNNGTC	1 cut(s)	314
DseDI	GACNNNNNNGTC	1 cut(s)	314
EaeI	YGGCCR	1 cut(s)	136
EagI	CGGCCG	1 cut(s)	136
Eam1104I	CTCTTC	1 cut(s)	648
EarI	CTCTTC	1 cut(s)	648
Ecl136II	GAGCTC	1 cut(s)	774
EclXI	CGGCCG	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	676
Eco24I	GRGCYC	1 cut(s)	776
Eco47I	GGWCC	2 cut(s)	41, 411
Eco52I	CGGCCG	1 cut(s)	136
Eco53kI	GAGCTC	1 cut(s)	774
Eco88I	CYCGRG	1 cut(s)	344
Eco91I	GGTNACC	1 cut(s)	680
EcoICRI	GAGCTC	1 cut(s)	774
EcoO109I	RGGNCCY	1 cut(s)	41
EcoO65I	GGTNACC	1 cut(s)	680
EcoT14I	CCWWGG	1 cut(s)	676
EcoT38I	GRGCYC	1 cut(s)	776
ErhI	CCWWGG	1 cut(s)	676
FaeI	CATG	2 cut(s)	527, 606
FaiI	YATR	6 cut(s)	38, 294, 525, 604, 715, 814
FalI	AAGNNNNNCTT	4 cut(s)	302, 334, 752, 784
FatI	CATG	2 cut(s)	523, 602
FauI	CCCGC	1 cut(s)	422
FblI	GTMKAC	1 cut(s)	516
Fnu4HI	GCNGC	3 cut(s)	136, 353, 796
FriOI	GRGCYC	1 cut(s)	776
Fsp4HI	GCNGC	3 cut(s)	136, 353, 796
FspBI	CTAG	1 cut(s)	497
GlaI	GCGC	1 cut(s)	712
GluI	GCNGC	3 cut(s)	136, 353, 796
HaeIII	GGCC	2 cut(s)	34, 138
HapII	CCGG	2 cut(s)	139, 418
HhaI	GCGC	1 cut(s)	713
Hin1I	GRCGYC	1 cut(s)	672
Hin1II	CATG	2 cut(s)	527, 606
Hin6I	GCGC	1 cut(s)	711
HinP1I	GCGC	1 cut(s)	711
HincII	GTYRAC	2 cut(s)	517, 529
HindII	GTYRAC	2 cut(s)	517, 529
HinfI	GANTC	3 cut(s)	185, 208, 262
HpaII	CCGG	2 cut(s)	139, 418
HphI	GGTGA	1 cut(s)	537
Hpy166II	GTNNAC	4 cut(s)	184, 517, 529, 661
Hpy188I	TCNGA	5 cut(s)	256, 332, 373, 700, 792
Hpy188III	TCNNGA	6 cut(s)	242, 266, 344, 346, 396, 769
Hpy8I	GTNNAC	4 cut(s)	184, 517, 529, 661
Hpy99I	CGWCG	1 cut(s)	165
HpyAV	CCTTC	4 cut(s)	425, 559, 585, 698
HpyCH4III	ACNGT	3 cut(s)	665, 719, 751
HpyCH4IV	ACGT	4 cut(s)	59, 315, 376, 672
HpyCH4V	TGCA	2 cut(s)	96, 661
HpyF10VI	GCNNNNNNNGC	2 cut(s)	423, 804
HpyF3I	CTNAG	5 cut(s)	178, 204, 775, 803, 808
HpySE526I	ACGT	4 cut(s)	59, 315, 376, 672
Hsp92I	GRCGYC	1 cut(s)	672
Hsp92II	CATG	2 cut(s)	527, 606
HspAI	GCGC	1 cut(s)	711
Kzo9I	GATC	9 cut(s)	236, 270, 390, 398, 437, 445, 485, 493, 633
LmnI	GCTCC	1 cut(s)	792
LpnPI	CCDG	4 cut(s)	92, 152, 431, 459
MaeI	CTAG	1 cut(s)	497
MaeII	ACGT	4 cut(s)	59, 315, 376, 672
MaeIII	GTNAC	3 cut(s)	680, 719, 742
MalI	GATC	9 cut(s)	238, 272, 392, 400, 439, 447, 487, 495, 635
MboI	GATC	9 cut(s)	236, 270, 390, 398, 437, 445, 485, 493, 633
MboII	GAAGA	4 cut(s)	203, 310, 635, 700
MflI	RGATCY	5 cut(s)	236, 270, 390, 437, 485
MhlI	GDGCHC	2 cut(s)	663, 776
MluCI	AATT	4 cut(s)	4, 367, 466, 535
MlyI	GAGTC	1 cut(s)	179
MroXI	GAANNNNTTC	2 cut(s)	317, 642
MseI	TTAA	2 cut(s)	62, 465
MspI	CCGG	2 cut(s)	139, 418
MspR9I	CCNGG	1 cut(s)	140
MwoI	GCNNNNNNNGC	2 cut(s)	423, 804
NciI	CCSGG	1 cut(s)	140
NdeII	GATC	9 cut(s)	236, 270, 390, 398, 437, 445, 485, 493, 633
NlaIII	CATG	2 cut(s)	527, 606
NlaIV	GGNNCC	6 cut(s)	329, 413, 439, 460, 478, 794
NmeAIII	GCCGAG	1 cut(s)	10
PaeR7I	CTCGAG	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	2 cut(s)	377, 796
PdmI	GAANNNNTTC	2 cut(s)	317, 642
PfeI	GAWTC	2 cut(s)	208, 262
PkrI	GCNGC	3 cut(s)	137, 354, 797
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
PpuMI	RGGWCCY	1 cut(s)	41
PshBI	ATTAAT	1 cut(s)	465
Psp124BI	GAGCTC	1 cut(s)	776
Psp1406I	AACGTT	1 cut(s)	376
Psp5II	RGGWCCY	1 cut(s)	41
PspEI	GGTNACC	1 cut(s)	680
PspN4I	GGNNCC	6 cut(s)	329, 413, 439, 460, 478, 794
PspPI	GGNCC	3 cut(s)	33, 41, 411
PspPPI	RGGWCCY	1 cut(s)	41
PsuI	RGATCY	5 cut(s)	236, 270, 390, 437, 485
RsaI	GTAC	1 cut(s)	567
RsaNI	GTAC	1 cut(s)	566
SacI	GAGCTC	1 cut(s)	776
SalI	GTCGAC	1 cut(s)	515
SaqAI	TTAA	2 cut(s)	62, 465
SatI	GCNGC	3 cut(s)	136, 353, 796
Sau3AI	GATC	9 cut(s)	236, 270, 390, 398, 437, 445, 485, 493, 633
Sau96I	GGNCC	3 cut(s)	33, 41, 411
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	1 cut(s)	140
SduI	GDGCHC	2 cut(s)	663, 776
Sfr274I	CTCGAG	1 cut(s)	344
SinI	GGWCC	2 cut(s)	41, 411
SlaI	CTCGAG	1 cut(s)	344
SmlI	CTYRAG	4 cut(s)	240, 344, 758, 769
SmoI	CTYRAG	4 cut(s)	240, 344, 758, 769
Sse9I	AATT	4 cut(s)	4, 367, 466, 535
SsiI	CCGC	5 cut(s)	135, 195, 352, 415, 796
SspMI	CTAG	1 cut(s)	497
SstI	GAGCTC	1 cut(s)	776
StyD4I	CCNGG	1 cut(s)	138
StyI	CCWWGG	1 cut(s)	676
TaaI	ACNGT	3 cut(s)	665, 719, 751
TaiI	ACGT	4 cut(s)	62, 318, 379, 675
TaqI	TCGA	8 cut(s)	283, 303, 345, 380, 397, 492, 516, 636
TasI	AATT	4 cut(s)	4, 367, 466, 535
TauI	GCSGC	3 cut(s)	138, 355, 798
TfiI	GAWTC	2 cut(s)	208, 262
Tru1I	TTAA	2 cut(s)	62, 465
Tru9I	TTAA	2 cut(s)	62, 465
TscAI	CASTG	3 cut(s)	186, 478, 670
TspDTI	ATGAA	4 cut(s)	17, 375, 444, 591
TspRI	CASTG	3 cut(s)	186, 478, 670
VneI	GTGCAC	1 cut(s)	659
VpaK11BI	GGWCC	2 cut(s)	41, 411
VspI	ATTAAT	1 cut(s)	465
XapI	RAATTY	2 cut(s)	4, 535
XhoI	CTCGAG	1 cut(s)	344
XmiI	GTMKAC	1 cut(s)	516
XmnI	GAANNNNTTC	2 cut(s)	317, 642
XspI	CTAG	1 cut(s)	497
ZraI	GACGTC	1 cut(s)	673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.