Rroxscaffold_1G00003640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000483
Physical Location & Seq
Reverse (-)
4522230 .. 4523580
1351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00003640.1

Sequence Viewer

Length: 708 bp
ATGCAATTCCTTTTATTTACACTCAACCGTTTCAGCAATCCGGCCCAAATACCCAAATCGTTGCGAAATCCGACCCACGAATTCCACCCAAAACTATTTCGAAACTCAACCCAACGGGCCTCCAACCACAACTACAAGAAGGGCATCGATCCGGGACAAGCCCATGCACAGCCCACCGCCGCGGCTTATCCCTTCCGTGAATTACGGAAATCAGATCTACTTTCGGCTAAAGTCGTCGCCACGGCGCCTCCGCATTCCCTCGGTCCCCTTACACGCTCTCCACGCGCCAACAAACTTTTCCGTATCGAGGACAAGAACGTCTTCTTTTGGTTCCGAACCTCAAGGCTCGTGAGAGGCGTGTTGAAGGAATTTCGGAACGTTCGGGTTGGTGGATCTCTAGATCTCAAATTTGGATCCACAAGTTCTACCGATGGTGGCAGGTCCATGGATCTCAACTTTGGTTCCACCGGTTCTACCGGTGATGATGGATCAATCGATCTAACCCTTGGGTCATGCGTCGGCTATGGTGTTGACCCATATTCCTCCTCACCCTTCAACGCTAATACCAAAACTACCTATTTTGGCACAACAGAGGACAATCTTTCATGGAACTACGAGGAGGAGATCACCGGAGGTCGAGACTCTTCCCCGTTCCCCGTGCATGGTGAAGACGTCCTTGGTAACCAAGATTACATCCGAGGAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

235

Amino Acids

26.06

Weight (kDa)

9.48

Isoelectric Point (pI)

38.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000483)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa Rorug04G0280300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 317
AatII GACGTC 1 cut(s) 675
Acc36I ACCTGC 1 cut(s) 429
AccB1I GGYRCC 1 cut(s) 244
AccII CGCG 2 cut(s) 182, 285
AciI CCGC 4 cut(s) 177, 180, 182, 251
AclI AACGTT 1 cut(s) 378
AclWI GGATC 6 cut(s) 143, 400, 408, 421, 456, 496
AcsI RAATTY 3 cut(s) 80, 368, 407
AcyI GRCGYC 2 cut(s) 245, 672
AfiI CCNNNNNNNGG 2 cut(s) 307, 662
AgeI ACCGGT 2 cut(s) 467, 476
AgsI TTSAA 2 cut(s) 364, 556
AjuI GAANNNNNNNTTGG 4 cut(s) 281, 313, 660, 692
Alw26I GTCTC 1 cut(s) 633
AlwI GGATC 6 cut(s) 143, 400, 408, 421, 456, 496
AoxI GGCC 2 cut(s) 42, 117
ApoI RAATTY 3 cut(s) 80, 368, 407
AsiGI ACCGGT 2 cut(s) 467, 476
Asp700I GAANNNNTTC 1 cut(s) 320
AspLEI GCGC 2 cut(s) 247, 287
AspS9I GGNCC 4 cut(s) 43, 117, 263, 441
AsuC2I CCSGG 1 cut(s) 153
AsuHPI GGTGA 4 cut(s) 491, 540, 619, 677
AsuII TTCGAA 1 cut(s) 100
AvaII GGWCC 2 cut(s) 263, 441
BamHI GGATCC 1 cut(s) 413
BanI GGYRCC 1 cut(s) 244
BauI CACGAG 1 cut(s) 347
BbsI GAAGAC 2 cut(s) 313, 675
BccI CCATC 2 cut(s) 425, 479
BceAI ACGGC 1 cut(s) 258
BcnI CCSGG 1 cut(s) 153
BcoDI GTCTC 1 cut(s) 633
BfaI CTAG 1 cut(s) 398
BfoI RGCGCY 1 cut(s) 248
BfuAI ACCTGC 1 cut(s) 429
BglII AGATCT 2 cut(s) 214, 400
BisI GCNGC 2 cut(s) 180, 183
BlsI GCNGC 2 cut(s) 181, 184
Bme1390I CCNGG 1 cut(s) 153
Bme18I GGWCC 2 cut(s) 263, 441
BmgT120I GGNCC 4 cut(s) 43, 117, 263, 441
BmiI GGNNCC 5 cut(s) 246, 265, 332, 415, 463
BmrFI CCNGG 1 cut(s) 153
BmsI GCATC 1 cut(s) 153
BpiI GAAGAC 2 cut(s) 313, 675
Bpu14I TTCGAA 1 cut(s) 100
BpuEI CTTGAG 1 cut(s) 325
BpuMI CCSGG 1 cut(s) 153
Bsa29I ATCGAT 2 cut(s) 147, 495
BsaHI GRCGYC 2 cut(s) 245, 672
BsaJI CCNNGG 7 cut(s) 180, 240, 259, 444, 505, 676, 697
BsaWI WCCGGW 3 cut(s) 467, 476, 629
BsaXI ACNNNNNCTCC 4 cut(s) 232, 262, 262, 292
Bsc4I CCNNNNNNNGG 2 cut(s) 307, 662
Bse118I RCCGGY 2 cut(s) 467, 476
BseCI ATCGAT 2 cut(s) 147, 495
BseDI CCNNGG 7 cut(s) 180, 240, 259, 444, 505, 676, 697
BseGI GGATG 1 cut(s) 693
BseLI CCNNNNNNNGG 2 cut(s) 307, 662
BseRI GAGGAG 3 cut(s) 535, 632, 635
Bsh1236I CGCG 2 cut(s) 182, 285
BshFI GGCC 2 cut(s) 44, 119
BshNI GGYRCC 1 cut(s) 244
BshTI ACCGGT 2 cut(s) 467, 476
BshVI ATCGAT 2 cut(s) 147, 495
BsiSI CCGG 5 cut(s) 41, 152, 468, 477, 630
BslFI GGGAC 2 cut(s) 168, 249
BslI CCNNNNNNNGG 2 cut(s) 307, 662
BsmAI GTCTC 1 cut(s) 633
BsmFI GGGAC 2 cut(s) 168, 249
BsmI GAATGC 1 cut(s) 253
BsnI GGCC 2 cut(s) 44, 119
Bsp119I TTCGAA 1 cut(s) 100
Bsp143I GATC 9 cut(s) 148, 214, 392, 400, 413, 448, 488, 496, 624
Bsp19I CCATGG 1 cut(s) 444
BspACI CCGC 4 cut(s) 177, 180, 182, 251
BspANI GGCC 2 cut(s) 44, 119
BspDI ATCGAT 2 cut(s) 147, 495
BspFNI CGCG 2 cut(s) 182, 285
BspLI GGNNCC 5 cut(s) 246, 265, 332, 415, 463
BspMI ACCTGC 1 cut(s) 429
BspPI GGATC 6 cut(s) 143, 400, 408, 421, 456, 496
BspT104I TTCGAA 1 cut(s) 100
BspT107I GGYRCC 1 cut(s) 244
BsrFI RCCGGY 2 cut(s) 467, 476
BssAI RCCGGY 2 cut(s) 467, 476
BssECI CCNNGG 7 cut(s) 180, 240, 259, 444, 505, 676, 697
BssMI GATC 9 cut(s) 148, 214, 392, 400, 413, 448, 488, 496, 624
BssNI GRCGYC 2 cut(s) 245, 672
BssSI CACGAG 1 cut(s) 347
BssT1I CCWWGG 3 cut(s) 444, 505, 676
Bst2BI CACGAG 1 cut(s) 347
Bst4CI ACNGT 1 cut(s) 29
Bst6I CTCTTC 1 cut(s) 649
BstACI GRCGYC 2 cut(s) 245, 672
BstBI TTCGAA 1 cut(s) 100
BstDSI CCRYGG 3 cut(s) 180, 240, 444
BstEII GGTNACC 1 cut(s) 680
BstF5I GGATG 1 cut(s) 693
BstFNI CGCG 2 cut(s) 182, 285
BstH2I RGCGCY 1 cut(s) 248
BstHHI GCGC 2 cut(s) 247, 287
BstKTI GATC 9 cut(s) 151, 217, 395, 403, 416, 451, 491, 499, 627
BstMAI GTCTC 1 cut(s) 633
BstMBI GATC 9 cut(s) 148, 214, 392, 400, 413, 448, 488, 496, 624
BstMWI GCNNNNNNNGC 1 cut(s) 282
BstPI GGTNACC 1 cut(s) 680
BstSCI CCNGG 1 cut(s) 151
BstUI CGCG 2 cut(s) 182, 285
BstV2I GAAGAC 2 cut(s) 313, 675
BstX2I RGATCY 5 cut(s) 214, 392, 400, 413, 448
BstYI RGATCY 5 cut(s) 214, 392, 400, 413, 448
Bsu15I ATCGAT 2 cut(s) 147, 495
BsuRI GGCC 2 cut(s) 44, 119
BsuTUI ATCGAT 2 cut(s) 147, 495
BtgI CCRYGG 3 cut(s) 180, 240, 444
BtsCI GGATG 1 cut(s) 693
BveI ACCTGC 1 cut(s) 429
CfoI GCGC 2 cut(s) 247, 287
Cfr10I RCCGGY 2 cut(s) 467, 476
Cfr13I GGNCC 4 cut(s) 43, 117, 263, 441
Cfr42I CCGCGG 1 cut(s) 183
ClaI ATCGAT 2 cut(s) 147, 495
CseI GACGC 1 cut(s) 505
CspAI ACCGGT 2 cut(s) 467, 476
CviAII CATG 5 cut(s) 164, 445, 513, 606, 662
CviJI RGCY 8 cut(s) 44, 119, 161, 172, 185, 227, 346, 522
CviKI_1 RGCY 8 cut(s) 44, 119, 161, 172, 185, 227, 346, 522
DinI GGCGCC 1 cut(s) 246
DpnI GATC 9 cut(s) 150, 216, 394, 402, 415, 450, 490, 498, 626
DpnII GATC 9 cut(s) 148, 214, 392, 400, 413, 448, 488, 496, 624
DrdI GACNNNNNNGTC 1 cut(s) 317
DseDI GACNNNNNNGTC 1 cut(s) 317
Eam1104I CTCTTC 1 cut(s) 649
EarI CTCTTC 1 cut(s) 649
Eco130I CCWWGG 3 cut(s) 444, 505, 676
Eco47I GGWCC 2 cut(s) 263, 441
Eco91I GGTNACC 1 cut(s) 680
EcoO65I GGTNACC 1 cut(s) 680
EcoRI GAATTC 1 cut(s) 80
EcoT14I CCWWGG 3 cut(s) 444, 505, 676
EgeI GGCGCC 1 cut(s) 246
EheI GGCGCC 1 cut(s) 246
ErhI CCWWGG 3 cut(s) 444, 505, 676
FaeI CATG 5 cut(s) 167, 448, 516, 609, 665
FaiI YATR 7 cut(s) 165, 446, 514, 525, 538, 607, 663
FalI AAGNNNNNCTT 4 cut(s) 305, 337, 660, 692
FaqI GGGAC 2 cut(s) 168, 249
FatI CATG 5 cut(s) 163, 444, 512, 605, 661
Fnu4HI GCNGC 2 cut(s) 180, 183
FokI GGATG 1 cut(s) 680
Fsp4HI GCNGC 2 cut(s) 180, 183
FspBI CTAG 1 cut(s) 398
GlaI GCGC 2 cut(s) 246, 286
GluI GCNGC 2 cut(s) 180, 183
HaeII RGCGCY 1 cut(s) 248
HaeIII GGCC 2 cut(s) 44, 119
HapII CCGG 5 cut(s) 41, 152, 468, 477, 630
HgaI GACGC 1 cut(s) 505
HhaI GCGC 2 cut(s) 247, 287
Hin1I GRCGYC 2 cut(s) 245, 672
Hin1II CATG 5 cut(s) 167, 448, 516, 609, 665
Hin6I GCGC 2 cut(s) 245, 285
HinP1I GCGC 2 cut(s) 245, 285
HincII GTYRAC 1 cut(s) 532
HindII GTYRAC 1 cut(s) 532
HinfI GANTC 1 cut(s) 641
HpaII CCGG 5 cut(s) 41, 152, 468, 477, 630
HphI GGTGA 4 cut(s) 491, 540, 619, 677
Hpy166II GTNNAC 1 cut(s) 532
Hpy188I TCNGA 5 cut(s) 72, 214, 335, 375, 698
Hpy188III TCNNGA 3 cut(s) 349, 398, 638
Hpy8I GTNNAC 1 cut(s) 532
Hpy99I CGWCG 2 cut(s) 239, 521
HpyAV CCTTC 5 cut(s) 133, 202, 358, 562, 696
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4IV ACGT 3 cut(s) 318, 378, 672
HpyCH4V TGCA 3 cut(s) 4, 167, 661
HpyF10VI GCNNNNNNNGC 1 cut(s) 282
HpySE526I ACGT 3 cut(s) 318, 378, 672
Hsp92I GRCGYC 2 cut(s) 245, 672
Hsp92II CATG 5 cut(s) 167, 448, 516, 609, 665
HspAI GCGC 2 cut(s) 245, 285
KasI GGCGCC 1 cut(s) 244
KspI CCGCGG 1 cut(s) 183
Kzo9I GATC 9 cut(s) 148, 214, 392, 400, 413, 448, 488, 496, 624
LpnPI CCDG 6 cut(s) 54, 165, 424, 481, 490, 643
LweI GCATC 1 cut(s) 153
MaeI CTAG 1 cut(s) 398
MaeII ACGT 3 cut(s) 318, 378, 672
MaeIII GTNAC 1 cut(s) 680
MalI GATC 9 cut(s) 150, 216, 394, 402, 415, 450, 490, 498, 626
MboI GATC 9 cut(s) 148, 214, 392, 400, 413, 448, 488, 496, 624
MboII GAAGA 3 cut(s) 313, 636, 680
MflI RGATCY 5 cut(s) 214, 392, 400, 413, 448
MluCI AATT 5 cut(s) 5, 80, 200, 368, 407
Mly113I GGCGCC 1 cut(s) 245
MlyI GAGTC 1 cut(s) 635
MmeI TCCRAC 2 cut(s) 95, 147
MroXI GAANNNNTTC 1 cut(s) 320
MspA1I CMGCKG 1 cut(s) 182
MspI CCGG 5 cut(s) 41, 152, 468, 477, 630
MspR9I CCNGG 1 cut(s) 153
Mva1269I GAATGC 1 cut(s) 253
MvnI CGCG 2 cut(s) 182, 285
MwoI GCNNNNNNNGC 1 cut(s) 282
NarI GGCGCC 1 cut(s) 245
NciI CCSGG 1 cut(s) 153
NcoI CCATGG 1 cut(s) 444
NdeII GATC 9 cut(s) 148, 214, 392, 400, 413, 448, 488, 496, 624
NlaIII CATG 5 cut(s) 167, 448, 516, 609, 665
NlaIV GGNNCC 5 cut(s) 246, 265, 332, 415, 463
NspV TTCGAA 1 cut(s) 100
PcsI WCGNNNNNNNCGW 1 cut(s) 354
PctI GAATGC 1 cut(s) 253
PdmI GAANNNNTTC 1 cut(s) 320
PfoI TCCNGGA 1 cut(s) 151
PinAI ACCGGT 2 cut(s) 467, 476
PkrI GCNGC 2 cut(s) 181, 184
PleI GAGTC 1 cut(s) 635
PluTI GGCGCC 1 cut(s) 248
PpsI GAGTC 1 cut(s) 635
Psp1406I AACGTT 1 cut(s) 378
PspEI GGTNACC 1 cut(s) 680
PspN4I GGNNCC 5 cut(s) 246, 265, 332, 415, 463
PspPI GGNCC 4 cut(s) 43, 117, 263, 441
PsuI RGATCY 5 cut(s) 214, 392, 400, 413, 448
SacII CCGCGG 1 cut(s) 183
SatI GCNGC 2 cut(s) 180, 183
Sau3AI GATC 9 cut(s) 148, 214, 392, 400, 413, 448, 488, 496, 624
Sau96I GGNCC 4 cut(s) 43, 117, 263, 441
SchI GAGTC 1 cut(s) 635
ScrFI CCNGG 1 cut(s) 153
SetI ASST 8 cut(s) 321, 341, 381, 443, 578, 637, 675, 707
SfaNI GCATC 1 cut(s) 153
SfoI GGCGCC 1 cut(s) 246
Sfr303I CCGCGG 1 cut(s) 183
SfuI TTCGAA 1 cut(s) 100
SgrBI CCGCGG 1 cut(s) 183
SinI GGWCC 2 cut(s) 263, 441
SmlI CTYRAG 1 cut(s) 340
SmoI CTYRAG 1 cut(s) 340
Sse9I AATT 5 cut(s) 5, 80, 200, 368, 407
SsiI CCGC 4 cut(s) 177, 180, 182, 251
SspDI GGCGCC 1 cut(s) 244
SspMI CTAG 1 cut(s) 398
StyD4I CCNGG 1 cut(s) 151
StyI CCWWGG 3 cut(s) 444, 505, 676
TaaI ACNGT 1 cut(s) 29
TaiI ACGT 3 cut(s) 321, 381, 675
TaqI TCGA 5 cut(s) 100, 147, 306, 495, 637
TaqII GACCGA 1 cut(s) 251
TasI AATT 5 cut(s) 5, 80, 200, 368, 407
TauI GCSGC 2 cut(s) 182, 185
TspDTI ATGAA 1 cut(s) 594
TspGWI ACGGA 3 cut(s) 185, 220, 290
VpaK11BI GGWCC 2 cut(s) 263, 441
XapI RAATTY 3 cut(s) 80, 368, 407
XbaI TCTAGA 1 cut(s) 397
XmnI GAANNNNTTC 1 cut(s) 320
XspI CTAG 1 cut(s) 398
ZraI GACGTC 1 cut(s) 673
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.