Rroxscaffold_1G00022320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000483
Physical Location & Seq
Forward (+)
27559117 .. 27569364
10248 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00022320.1

Sequence Viewer

Length: 294 bp
ATGTTGACCCATATTCCTCTTCACCCTTTAACAATAATATCGGTACTACCTCCTTCGGCACAACGGGAGGACAAACTTTCATGGAACAACGAGGAGGAGATCACCAAGAGGTCGAAACTCTTCCTCTGTTCCCCGTGCACGATGAGGACGTCCTTGGTAACCCGAAGACTACTTTCGAGGAAGGTAGCGCATATGGTTACTATTCCGGTGGCTCGGGCAGTTACAACGGTGGCTCTCAAGTTTCTCTTGAGCTCGGCCTCAACCCATCGGAGTCGCCGACTTAGCTTAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.93

Weight (kDa)

11.45

Isoelectric Point (pI)

62.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000483)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa Rorug04G0280300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 152
AcyI GRCGYC 1 cut(s) 149
AfaI GTAC 1 cut(s) 45
AluBI AGCT 2 cut(s) 252, 285
AluI AGCT 2 cut(s) 252, 285
Alw21I GWGCWC 2 cut(s) 140, 254
Alw44I GTGCAC 1 cut(s) 136
Ama87I CYCGRG 1 cut(s) 213
AoxI GGCC 1 cut(s) 255
ApaLI GTGCAC 1 cut(s) 136
Asp700I GAANNNNTTC 1 cut(s) 119
AspLEI GCGC 1 cut(s) 190
AsuHPI GGTGA 2 cut(s) 14, 94
AvaI CYCGRG 1 cut(s) 213
BaeGI GKGCMC 1 cut(s) 140
BanII GRGCYC 1 cut(s) 254
BbsI GAAGAC 1 cut(s) 172
Bbv12I GWGCWC 2 cut(s) 140, 254
BccI CCATC 1 cut(s) 273
BlpI GCTNAGC 1 cut(s) 286
BmeT110I CYCGRG 1 cut(s) 213
BpiI GAAGAC 1 cut(s) 172
Bpu1102I GCTNAGC 1 cut(s) 286
BpuEI CTTGAG 2 cut(s) 221, 268
BsaHI GRCGYC 1 cut(s) 149
BsaJI CCNNGG 1 cut(s) 153
BsaWI WCCGGW 1 cut(s) 205
BseDI CCNNGG 1 cut(s) 153
BseRI GAGGAG 2 cut(s) 107, 110
BseSI GKGCMC 1 cut(s) 140
BshFI GGCC 1 cut(s) 257
BsiHKAI GWGCWC 2 cut(s) 140, 254
BsiHKCI CYCGRG 1 cut(s) 213
BsiSI CCGG 1 cut(s) 206
BsnI GGCC 1 cut(s) 257
BsoBI CYCGRG 1 cut(s) 213
Bsp1286I GDGCHC 2 cut(s) 140, 254
Bsp143I GATC 1 cut(s) 99
Bsp1720I GCTNAGC 1 cut(s) 286
BspANI GGCC 1 cut(s) 257
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 1 cut(s) 99
BssNI GRCGYC 1 cut(s) 149
BssT1I CCWWGG 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 229
Bst6I CTCTTC 2 cut(s) 24, 125
BstACI GRCGYC 1 cut(s) 149
BstDEI CTNAG 2 cut(s) 281, 286
BstEII GGTNACC 1 cut(s) 157
BstHHI GCGC 1 cut(s) 190
BstKTI GATC 1 cut(s) 102
BstMBI GATC 1 cut(s) 99
BstMWI GCNNNNNNNGC 1 cut(s) 282
BstPI GGTNACC 1 cut(s) 157
BstSLI GKGCMC 1 cut(s) 140
BstV2I GAAGAC 1 cut(s) 172
BsuRI GGCC 1 cut(s) 257
CfoI GCGC 1 cut(s) 190
Csp6I GTAC 1 cut(s) 44
CviAII CATG 1 cut(s) 81
CviJI RGCY 5 cut(s) 212, 233, 252, 257, 285
CviKI_1 RGCY 5 cut(s) 212, 233, 252, 257, 285
CviQI GTAC 1 cut(s) 44
DdeI CTNAG 2 cut(s) 281, 286
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
Eam1104I CTCTTC 2 cut(s) 24, 125
EarI CTCTTC 2 cut(s) 24, 125
Ecl136II GAGCTC 1 cut(s) 252
Eco130I CCWWGG 1 cut(s) 153
Eco24I GRGCYC 1 cut(s) 254
Eco53kI GAGCTC 1 cut(s) 252
Eco88I CYCGRG 1 cut(s) 213
Eco91I GGTNACC 1 cut(s) 157
EcoICRI GAGCTC 1 cut(s) 252
EcoO65I GGTNACC 1 cut(s) 157
EcoT14I CCWWGG 1 cut(s) 153
EcoT38I GRGCYC 1 cut(s) 254
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 1 cut(s) 84
FaiI YATR 5 cut(s) 12, 82, 192, 194, 292
FalI AAGNNNNNCTT 2 cut(s) 230, 262
FatI CATG 1 cut(s) 80
FauNDI CATATG 1 cut(s) 192
FriOI GRGCYC 1 cut(s) 254
GlaI GCGC 1 cut(s) 189
HaeIII GGCC 1 cut(s) 257
HapII CCGG 1 cut(s) 206
HhaI GCGC 1 cut(s) 190
Hin1I GRCGYC 1 cut(s) 149
Hin1II CATG 1 cut(s) 84
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 1 cut(s) 271
HpaII CCGG 1 cut(s) 206
HphI GGTGA 2 cut(s) 14, 94
Hpy166II GTNNAC 2 cut(s) 6, 138
Hpy188I TCNGA 1 cut(s) 270
Hpy188III TCNNGA 1 cut(s) 247
Hpy8I GTNNAC 2 cut(s) 6, 138
HpyAV CCTTC 2 cut(s) 63, 175
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4IV ACGT 1 cut(s) 149
HpyCH4V TGCA 1 cut(s) 138
HpyF10VI GCNNNNNNNGC 1 cut(s) 282
HpyF3I CTNAG 2 cut(s) 281, 286
HpySE526I ACGT 1 cut(s) 149
Hsp92I GRCGYC 1 cut(s) 149
Hsp92II CATG 1 cut(s) 84
HspAI GCGC 1 cut(s) 188
Kzo9I GATC 1 cut(s) 99
LpnPI CCDG 1 cut(s) 219
MaeII ACGT 1 cut(s) 149
MaeIII GTNAC 3 cut(s) 157, 196, 220
MalI GATC 1 cut(s) 101
MboI GATC 1 cut(s) 99
MboII GAAGA 3 cut(s) 11, 112, 177
MhlI GDGCHC 2 cut(s) 140, 254
MlyI GAGTC 1 cut(s) 280
MroXI GAANNNNTTC 1 cut(s) 119
MseI TTAA 1 cut(s) 29
MspI CCGG 1 cut(s) 206
MwoI GCNNNNNNNGC 1 cut(s) 282
NdeI CATATG 1 cut(s) 192
NdeII GATC 1 cut(s) 99
NlaIII CATG 1 cut(s) 84
NmeAIII GCCGAG 1 cut(s) 233
PcsI WCGNNNNNNNCGW 2 cut(s) 146, 274
PdmI GAANNNNTTC 1 cut(s) 119
PleI GAGTC 1 cut(s) 279
PpsI GAGTC 1 cut(s) 279
Psp124BI GAGCTC 1 cut(s) 254
PspEI GGTNACC 1 cut(s) 157
RsaI GTAC 1 cut(s) 45
RsaNI GTAC 1 cut(s) 44
SacI GAGCTC 1 cut(s) 254
SaqAI TTAA 1 cut(s) 29
Sau3AI GATC 1 cut(s) 99
SchI GAGTC 1 cut(s) 280
SduI GDGCHC 2 cut(s) 140, 254
SetI ASST 6 cut(s) 52, 113, 152, 186, 254, 287
SmlI CTYRAG 2 cut(s) 236, 247
SmoI CTYRAG 2 cut(s) 236, 247
SstI GAGCTC 1 cut(s) 254
StyI CCWWGG 1 cut(s) 153
TaaI ACNGT 1 cut(s) 229
TaiI ACGT 1 cut(s) 152
TaqI TCGA 2 cut(s) 113, 176
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TspDTI ATGAA 1 cut(s) 69
VneI GTGCAC 1 cut(s) 136
XmnI GAANNNNTTC 1 cut(s) 119
ZraI GACGTC 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.