Rroxscaffold_2G00089240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000483
Physical Location & Seq
Reverse (-)
11235558 .. 11236013
456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00089240.1

Sequence Viewer

Length: 456 bp
ATGAAGGCAATTCGGAATGTTCGAGTTGGTGGATCTCTCGATCTCAACTTTGGATCCACTAGTCCTACCGATGATGGTGGGTCCATTGATCTAAACTTTGGTTCCATTGGTTCCACCGGAGCTGATGGATCTATCGATCTAACTTTTGGGTCAAGTGTCGACTATGGTGTTGACCCATATTCTTCCTCACCCTTCAACACTAATACCCGTACTACCTCTTTTGGCACAACAGAGAACAATCTTTCATGGAACAACGAGGAGGAGATCACCAAGAGGTCGAGACTCTTCCTCTGTTCCCCATGCACGGTGAGAAGGTCCTTGGTAACCCGAAAACTACTTCCGAGGAAGGTAACGCATATGGTTACTATTCCAAAGGCTCATGCGATTACAACGGTGGCTCTTCCGTTTCTCTTGAGCTCGGCCTCAACCCATCCGGAGTCTGCCGACTTAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

16.14

Weight (kDa)

6.82

Isoelectric Point (pI)

42.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000483)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa Rorug04G0280300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 159
AccIII TCCGGA 1 cut(s) 433
AclWI GGATC 4 cut(s) 40, 48, 61, 136
AfaI GTAC 1 cut(s) 211
AfiI CCNNNNNNNGG 1 cut(s) 304
AgsI TTSAA 1 cut(s) 196
AhlI ACTAGT 1 cut(s) 59
AluBI AGCT 3 cut(s) 122, 417, 452
AluI AGCT 3 cut(s) 122, 417, 452
Alw21I GWGCWC 1 cut(s) 419
Alw26I GTCTC 1 cut(s) 274
AlwI GGATC 4 cut(s) 40, 48, 61, 136
Aor13HI TCCGGA 1 cut(s) 433
AoxI GGCC 1 cut(s) 420
AspS9I GGNCC 2 cut(s) 81, 315
AsuHPI GGTGA 3 cut(s) 180, 259, 319
AvaII GGWCC 2 cut(s) 81, 315
BamHI GGATCC 1 cut(s) 53
BanII GRGCYC 1 cut(s) 419
Bbv12I GWGCWC 1 cut(s) 419
BccI CCATC 3 cut(s) 68, 119, 438
BcoDI GTCTC 1 cut(s) 274
BcuI ACTAGT 1 cut(s) 59
BfaI CTAG 1 cut(s) 60
Bme18I GGWCC 2 cut(s) 81, 315
BmgT120I GGNCC 2 cut(s) 81, 315
BmiI GGNNCC 4 cut(s) 55, 82, 103, 112
BpuEI CTTGAG 1 cut(s) 433
Bsa29I ATCGAT 1 cut(s) 135
BsaJI CCNNGG 2 cut(s) 318, 341
BsaWI WCCGGW 2 cut(s) 116, 433
Bsc4I CCNNNNNNNGG 1 cut(s) 304
BseAI TCCGGA 1 cut(s) 433
BseCI ATCGAT 1 cut(s) 135
BseDI CCNNGG 2 cut(s) 318, 341
BseGI GGATG 1 cut(s) 430
BseLI CCNNNNNNNGG 1 cut(s) 304
BseRI GAGGAG 2 cut(s) 272, 275
BshFI GGCC 1 cut(s) 422
BshVI ATCGAT 1 cut(s) 135
BsiHKAI GWGCWC 1 cut(s) 419
BsiSI CCGG 2 cut(s) 117, 434
BslI CCNNNNNNNGG 1 cut(s) 304
BsmAI GTCTC 1 cut(s) 274
BsnI GGCC 1 cut(s) 422
Bsp1286I GDGCHC 1 cut(s) 419
Bsp13I TCCGGA 1 cut(s) 433
Bsp143I GATC 7 cut(s) 32, 40, 53, 88, 128, 136, 264
BspANI GGCC 1 cut(s) 422
BspDI ATCGAT 1 cut(s) 135
BspEI TCCGGA 1 cut(s) 433
BspLI GGNNCC 4 cut(s) 55, 82, 103, 112
BspPI GGATC 4 cut(s) 40, 48, 61, 136
BspQI GCTCTTC 1 cut(s) 405
BssECI CCNNGG 2 cut(s) 318, 341
BssMI GATC 7 cut(s) 32, 40, 53, 88, 128, 136, 264
BssT1I CCWWGG 1 cut(s) 318
Bst4CI ACNGT 2 cut(s) 307, 394
Bst6I CTCTTC 2 cut(s) 290, 405
BstDEI CTNAG 2 cut(s) 448, 453
BstEII GGTNACC 1 cut(s) 322
BstF5I GGATG 1 cut(s) 430
BstKTI GATC 7 cut(s) 35, 43, 56, 91, 131, 139, 267
BstMAI GTCTC 1 cut(s) 274
BstMBI GATC 7 cut(s) 32, 40, 53, 88, 128, 136, 264
BstMWI GCNNNNNNNGC 1 cut(s) 449
BstPI GGTNACC 1 cut(s) 322
BstX2I RGATCY 3 cut(s) 32, 53, 128
BstYI RGATCY 3 cut(s) 32, 53, 128
Bsu15I ATCGAT 1 cut(s) 135
BsuRI GGCC 1 cut(s) 422
BsuTUI ATCGAT 1 cut(s) 135
BtsCI GGATG 1 cut(s) 430
Cfr13I GGNCC 2 cut(s) 81, 315
ClaI ATCGAT 1 cut(s) 135
Csp6I GTAC 1 cut(s) 210
CviAII CATG 3 cut(s) 246, 300, 380
CviJI RGCY 6 cut(s) 122, 377, 398, 417, 422, 452
CviKI_1 RGCY 6 cut(s) 122, 377, 398, 417, 422, 452
CviQI GTAC 1 cut(s) 210
DdeI CTNAG 2 cut(s) 448, 453
DpnI GATC 7 cut(s) 34, 42, 55, 90, 130, 138, 266
DpnII GATC 7 cut(s) 32, 40, 53, 88, 128, 136, 264
Eam1104I CTCTTC 2 cut(s) 290, 405
EarI CTCTTC 2 cut(s) 290, 405
Ecl136II GAGCTC 1 cut(s) 417
Eco130I CCWWGG 1 cut(s) 318
Eco24I GRGCYC 1 cut(s) 419
Eco47I GGWCC 2 cut(s) 81, 315
Eco53kI GAGCTC 1 cut(s) 417
Eco91I GGTNACC 1 cut(s) 322
EcoICRI GAGCTC 1 cut(s) 417
EcoO109I RGGNCCY 1 cut(s) 315
EcoO65I GGTNACC 1 cut(s) 322
EcoT14I CCWWGG 1 cut(s) 318
EcoT38I GRGCYC 1 cut(s) 419
ErhI CCWWGG 1 cut(s) 318
FaeI CATG 3 cut(s) 249, 303, 383
FaiI YATR 7 cut(s) 165, 178, 247, 301, 357, 359, 381
FatI CATG 3 cut(s) 245, 299, 379
FauNDI CATATG 1 cut(s) 357
FblI GTMKAC 1 cut(s) 159
FokI GGATG 1 cut(s) 417
FriOI GRGCYC 1 cut(s) 419
FspBI CTAG 1 cut(s) 60
HaeIII GGCC 1 cut(s) 422
HapII CCGG 2 cut(s) 117, 434
Hin1II CATG 3 cut(s) 249, 303, 383
HincII GTYRAC 2 cut(s) 160, 172
HindII GTYRAC 2 cut(s) 160, 172
HinfI GANTC 2 cut(s) 282, 437
HpaII CCGG 2 cut(s) 117, 434
HphI GGTGA 3 cut(s) 180, 259, 319
Hpy166II GTNNAC 2 cut(s) 160, 172
Hpy188I TCNGA 2 cut(s) 15, 342
Hpy188III TCNNGA 4 cut(s) 38, 279, 412, 434
Hpy8I GTNNAC 2 cut(s) 160, 172
HpyAV CCTTC 3 cut(s) 202, 306, 340
HpyCH4III ACNGT 2 cut(s) 307, 394
HpyCH4V TGCA 1 cut(s) 303
HpyF10VI GCNNNNNNNGC 1 cut(s) 449
HpyF3I CTNAG 2 cut(s) 448, 453
Hsp92II CATG 3 cut(s) 249, 303, 383
Kpn2I TCCGGA 1 cut(s) 433
Kzo9I GATC 7 cut(s) 32, 40, 53, 88, 128, 136, 264
LguI GCTCTTC 1 cut(s) 405
LmnI GCTCC 1 cut(s) 119
LpnPI CCDG 2 cut(s) 130, 447
MaeI CTAG 1 cut(s) 60
MaeIII GTNAC 3 cut(s) 322, 349, 361
MalI GATC 7 cut(s) 34, 42, 55, 90, 130, 138, 266
MboI GATC 7 cut(s) 32, 40, 53, 88, 128, 136, 264
MboII GAAGA 3 cut(s) 174, 277, 392
MflI RGATCY 3 cut(s) 32, 53, 128
MhlI GDGCHC 1 cut(s) 419
MluCI AATT 1 cut(s) 9
MlyI GAGTC 2 cut(s) 276, 446
MnlI CCTC 8 cut(s) 196, 226, 250, 253, 267, 299, 336, 433
MroI TCCGGA 1 cut(s) 433
MspI CCGG 2 cut(s) 117, 434
MwoI GCNNNNNNNGC 1 cut(s) 449
NdeI CATATG 1 cut(s) 357
NdeII GATC 7 cut(s) 32, 40, 53, 88, 128, 136, 264
NlaIII CATG 3 cut(s) 249, 303, 383
NlaIV GGNNCC 4 cut(s) 55, 82, 103, 112
NmeAIII GCCGAG 1 cut(s) 398
PciSI GCTCTTC 1 cut(s) 405
PcsI WCGNNNNNNNCGW 1 cut(s) 19
PleI GAGTC 2 cut(s) 276, 445
PpsI GAGTC 2 cut(s) 276, 445
PpuMI RGGWCCY 1 cut(s) 315
Psp124BI GAGCTC 1 cut(s) 419
Psp5II RGGWCCY 1 cut(s) 315
PspEI GGTNACC 1 cut(s) 322
PspN4I GGNNCC 4 cut(s) 55, 82, 103, 112
PspPI GGNCC 2 cut(s) 81, 315
PspPPI RGGWCCY 1 cut(s) 315
PsuI RGATCY 3 cut(s) 32, 53, 128
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
SacI GAGCTC 1 cut(s) 419
SalI GTCGAC 1 cut(s) 158
SapI GCTCTTC 1 cut(s) 405
Sau3AI GATC 7 cut(s) 32, 40, 53, 88, 128, 136, 264
Sau96I GGNCC 2 cut(s) 81, 315
SchI GAGTC 2 cut(s) 276, 446
SduI GDGCHC 1 cut(s) 419
SetI ASST 7 cut(s) 124, 218, 278, 317, 351, 419, 454
SinI GGWCC 2 cut(s) 81, 315
SmlI CTYRAG 1 cut(s) 412
SmoI CTYRAG 1 cut(s) 412
SpeI ACTAGT 1 cut(s) 59
Sse9I AATT 1 cut(s) 9
SspMI CTAG 1 cut(s) 60
SstI GAGCTC 1 cut(s) 419
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 2 cut(s) 307, 394
TaqI TCGA 5 cut(s) 22, 39, 135, 159, 278
TasI AATT 1 cut(s) 9
TspDTI ATGAA 2 cut(s) 17, 234
TspGWI ACGGA 1 cut(s) 393
VpaK11BI GGWCC 2 cut(s) 81, 315
XmiI GTMKAC 1 cut(s) 159
XspI CTAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.