Rroxscaffold_3G00239360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000483
Physical Location & Seq
Forward (+)
29559890 .. 29560198
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00239360.1

Sequence Viewer

Length: 309 bp
ATGAAGGCAATTCGGAACGTTCGGGTTGGTGGATCTCTCGATCTCAACTTTGGACCCGCTTGTTCTACCGATGAAGGTGGATCCATTGATCTAAACTTTGGTTCCATTAATTCCACCGGTGCCGATGGATCCATCGATCTAGCTTTTGGGTCAAGCGTCGACTATCATGTTGACCCAAATTCCTCTTCACCCTTCAACAATAACATCGTACTACCTCCTTCAAAGACAACAGAGGACAAACTTCCATGGAACAACGAGGAGGAGATCACCAGGAGGTCAAAACTTTTCCCCGTTCCCCGTGCACGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

10.98

Weight (kDa)

4.96

Isoelectric Point (pI)

59.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000483)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa Rorug04G0280300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 119
AccI GTMKAC 1 cut(s) 159
AciI CCGC 1 cut(s) 57
AclI AACGTT 1 cut(s) 18
AclWI GGATC 5 cut(s) 40, 75, 88, 123, 136
AcsI RAATTY 1 cut(s) 178
AfaI GTAC 1 cut(s) 210
AfiI CCNNNNNNNGG 1 cut(s) 303
AgeI ACCGGT 1 cut(s) 116
AgsI TTSAA 2 cut(s) 196, 222
AjnI CCWGG 1 cut(s) 269
AjuI GAANNNNNNNTTGG 2 cut(s) 169, 201
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
Alw21I GWGCWC 1 cut(s) 304
Alw44I GTGCAC 1 cut(s) 300
AlwI GGATC 5 cut(s) 40, 75, 88, 123, 136
ApaLI GTGCAC 1 cut(s) 300
ApoI RAATTY 1 cut(s) 178
AseI ATTAAT 1 cut(s) 108
AsiGI ACCGGT 1 cut(s) 116
AspS9I GGNCC 1 cut(s) 53
AsuHPI GGTGA 2 cut(s) 180, 259
AvaII GGWCC 1 cut(s) 53
BaeGI GKGCMC 1 cut(s) 304
BamHI GGATCC 2 cut(s) 80, 128
BanI GGYRCC 1 cut(s) 119
Bbv12I GWGCWC 1 cut(s) 304
BccI CCATC 2 cut(s) 119, 140
BciT130I CCWGG 1 cut(s) 271
BfaI CTAG 1 cut(s) 140
Bme1390I CCNGG 1 cut(s) 271
Bme18I GGWCC 1 cut(s) 53
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 5 cut(s) 55, 82, 103, 121, 130
BmrFI CCNGG 1 cut(s) 271
Bsa29I ATCGAT 1 cut(s) 135
BsaJI CCNNGG 1 cut(s) 245
BsaWI WCCGGW 1 cut(s) 116
Bsc4I CCNNNNNNNGG 1 cut(s) 303
Bse118I RCCGGY 1 cut(s) 116
BseBI CCWGG 1 cut(s) 271
BseCI ATCGAT 1 cut(s) 135
BseDI CCNNGG 1 cut(s) 245
BseLI CCNNNNNNNGG 1 cut(s) 303
BseRI GAGGAG 2 cut(s) 272, 275
BseSI GKGCMC 1 cut(s) 304
BshNI GGYRCC 1 cut(s) 119
BshTI ACCGGT 1 cut(s) 116
BshVI ATCGAT 1 cut(s) 135
BsiHKAI GWGCWC 1 cut(s) 304
BsiSI CCGG 1 cut(s) 117
BslI CCNNNNNNNGG 1 cut(s) 303
Bsp1286I GDGCHC 1 cut(s) 304
Bsp143I GATC 7 cut(s) 32, 40, 80, 88, 128, 136, 264
Bsp19I CCATGG 1 cut(s) 245
BspACI CCGC 1 cut(s) 57
BspDI ATCGAT 1 cut(s) 135
BspLI GGNNCC 5 cut(s) 55, 82, 103, 121, 130
BspPI GGATC 5 cut(s) 40, 75, 88, 123, 136
BspT107I GGYRCC 1 cut(s) 119
BsrFI RCCGGY 1 cut(s) 116
BssAI RCCGGY 1 cut(s) 116
BssECI CCNNGG 1 cut(s) 245
BssMI GATC 7 cut(s) 32, 40, 80, 88, 128, 136, 264
BssT1I CCWWGG 1 cut(s) 245
Bst2UI CCWGG 1 cut(s) 271
Bst4CI ACNGT 1 cut(s) 306
Bst6I CTCTTC 1 cut(s) 190
BstDSI CCRYGG 1 cut(s) 245
BstKTI GATC 7 cut(s) 35, 43, 83, 91, 131, 139, 267
BstMBI GATC 7 cut(s) 32, 40, 80, 88, 128, 136, 264
BstNI CCWGG 1 cut(s) 271
BstSCI CCNGG 1 cut(s) 269
BstSLI GKGCMC 1 cut(s) 304
BstX2I RGATCY 3 cut(s) 32, 80, 128
BstYI RGATCY 3 cut(s) 32, 80, 128
Bsu15I ATCGAT 1 cut(s) 135
BsuTUI ATCGAT 1 cut(s) 135
BtgI CCRYGG 1 cut(s) 245
Cfr10I RCCGGY 1 cut(s) 116
Cfr13I GGNCC 1 cut(s) 53
ClaI ATCGAT 1 cut(s) 135
CseI GACGC 1 cut(s) 145
Csp6I GTAC 1 cut(s) 209
CspAI ACCGGT 1 cut(s) 116
CviAII CATG 2 cut(s) 167, 246
CviJI RGCY 1 cut(s) 143
CviKI_1 RGCY 1 cut(s) 143
CviQI GTAC 1 cut(s) 209
DpnI GATC 7 cut(s) 34, 42, 82, 90, 130, 138, 266
DpnII GATC 7 cut(s) 32, 40, 80, 88, 128, 136, 264
Eam1104I CTCTTC 1 cut(s) 190
EarI CTCTTC 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 245
Eco47I GGWCC 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 269
EcoT14I CCWWGG 1 cut(s) 245
ErhI CCWWGG 1 cut(s) 245
FaeI CATG 2 cut(s) 170, 249
FaiI YATR 2 cut(s) 168, 247
FatI CATG 2 cut(s) 166, 245
FauI CCCGC 1 cut(s) 64
FblI GTMKAC 1 cut(s) 159
FspBI CTAG 1 cut(s) 140
HapII CCGG 1 cut(s) 117
HgaI GACGC 1 cut(s) 145
Hin1II CATG 2 cut(s) 170, 249
HincII GTYRAC 2 cut(s) 160, 172
HindII GTYRAC 2 cut(s) 160, 172
HpaII CCGG 1 cut(s) 117
HphI GGTGA 2 cut(s) 180, 259
Hpy166II GTNNAC 3 cut(s) 160, 172, 302
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 1 cut(s) 38
Hpy8I GTNNAC 3 cut(s) 160, 172, 302
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 3 cut(s) 68, 202, 228
HpyCH4III ACNGT 1 cut(s) 306
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 1 cut(s) 302
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 2 cut(s) 170, 249
Kzo9I GATC 7 cut(s) 32, 40, 80, 88, 128, 136, 264
LpnPI CCDG 3 cut(s) 130, 256, 283
MaeI CTAG 1 cut(s) 140
MaeII ACGT 1 cut(s) 18
MalI GATC 7 cut(s) 34, 42, 82, 90, 130, 138, 266
MboI GATC 7 cut(s) 32, 40, 80, 88, 128, 136, 264
MboII GAAGA 1 cut(s) 177
MflI RGATCY 3 cut(s) 32, 80, 128
MhlI GDGCHC 1 cut(s) 304
MluCI AATT 3 cut(s) 9, 109, 178
MnlI CCTC 6 cut(s) 193, 225, 226, 250, 253, 267
MseI TTAA 1 cut(s) 108
MspI CCGG 1 cut(s) 117
MspR9I CCNGG 1 cut(s) 271
MvaI CCWGG 1 cut(s) 271
NcoI CCATGG 1 cut(s) 245
NdeII GATC 7 cut(s) 32, 40, 80, 88, 128, 136, 264
NlaIII CATG 2 cut(s) 170, 249
NlaIV GGNNCC 5 cut(s) 55, 82, 103, 121, 130
PinAI ACCGGT 1 cut(s) 116
PshBI ATTAAT 1 cut(s) 108
Psp1406I AACGTT 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 269
PspGI CCWGG 1 cut(s) 269
PspN4I GGNNCC 5 cut(s) 55, 82, 103, 121, 130
PspPI GGNCC 1 cut(s) 53
PsuI RGATCY 3 cut(s) 32, 80, 128
RsaI GTAC 1 cut(s) 210
RsaNI GTAC 1 cut(s) 209
SalI GTCGAC 1 cut(s) 158
SaqAI TTAA 1 cut(s) 108
Sau3AI GATC 7 cut(s) 32, 40, 80, 88, 128, 136, 264
Sau96I GGNCC 1 cut(s) 53
ScrFI CCNGG 1 cut(s) 271
SduI GDGCHC 1 cut(s) 304
SetI ASST 5 cut(s) 21, 79, 145, 217, 278
SgrAI CRCCGGYG 1 cut(s) 116
SinI GGWCC 1 cut(s) 53
Sse9I AATT 3 cut(s) 9, 109, 178
SsiI CCGC 1 cut(s) 57
SspMI CTAG 1 cut(s) 140
StyD4I CCNGG 1 cut(s) 269
StyI CCWWGG 1 cut(s) 245
TaaI ACNGT 1 cut(s) 306
TaiI ACGT 1 cut(s) 21
TaqI TCGA 3 cut(s) 39, 135, 159
TasI AATT 3 cut(s) 9, 109, 178
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TspDTI ATGAA 2 cut(s) 17, 87
VneI GTGCAC 1 cut(s) 300
VpaK11BI GGWCC 1 cut(s) 53
VspI ATTAAT 1 cut(s) 108
XapI RAATTY 1 cut(s) 178
XmiI GTMKAC 1 cut(s) 159
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.