Rroxscaffold_180G00433400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000180
OG0000483
Physical Location & Seq
Reverse (-)
345650 .. 346102
453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_180G00433400.1

Sequence Viewer

Length: 453 bp
ATGAAGGCATTTCGGAACGTTCGGGTTGGTGGATCTCTCGATCTCAACTTTGGACCCACAAGTTCTACGGATGAAGGTGGATCCATTGATCCGAACTTTGGTTCCACCGATCCTACAGTCTTGATGGATCCGTCGATTTCAATTTTGGATCATGGGTCTGCCATAGTGTTGACCCATATTCCTCCTCACCTTCCAACACTAATACCCATACTATTTCCTTTGGCACAACAGGAGGACAACCTTTCATGGAACAACGAGGAGGAGATCAGCGGGAGATCGAAACTCTTCCTCTGTTCCCCGTGCACGGTGAGGACATCCTTGGTAACCGAAGACTACTTCGAGGAAAGTAGCGCATACGGTTACTATTTTGGTGGCTCGGGCAGTTACAACGGTGGCTCTCAAGTCTCTCTTGAGCTCGGCCTCAACCCATTCGGAGCCGCCGACTCGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

15.99

Weight (kDa)

4.26

Isoelectric Point (pI)

46.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000483)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa Rorug04G0280300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 270, 438
AclI AACGTT 1 cut(s) 18
AclWI GGATC 8 cut(s) 40, 75, 83, 88, 104, 122, 135, 156
AfiI CCNNNNNNNGG 2 cut(s) 98, 304
AgsI TTSAA 1 cut(s) 141
AloI GAACNNNNNNTCC 2 cut(s) 86, 118
AluBI AGCT 1 cut(s) 415
AluI AGCT 1 cut(s) 415
Alw21I GWGCWC 2 cut(s) 305, 417
Alw26I GTCTC 1 cut(s) 409
Alw44I GTGCAC 1 cut(s) 301
AlwI GGATC 8 cut(s) 40, 75, 83, 88, 104, 122, 135, 156
Ama87I CYCGRG 1 cut(s) 376
AoxI GGCC 1 cut(s) 418
ApaLI GTGCAC 1 cut(s) 301
Asp700I GAANNNNTTC 1 cut(s) 284
AspLEI GCGC 1 cut(s) 353
AspS9I GGNCC 1 cut(s) 53
AsuHPI GGTGA 2 cut(s) 179, 319
AvaI CYCGRG 1 cut(s) 376
AvaII GGWCC 1 cut(s) 53
BaeGI GKGCMC 1 cut(s) 305
BamHI GGATCC 2 cut(s) 80, 127
BanII GRGCYC 1 cut(s) 417
BbsI GAAGAC 1 cut(s) 336
Bbv12I GWGCWC 2 cut(s) 305, 417
BccI CCATC 1 cut(s) 118
BcoDI GTCTC 1 cut(s) 409
BfmI CTRYAG 1 cut(s) 114
BglI GCCNNNNNGGC 1 cut(s) 446
BisI GCNGC 1 cut(s) 438
BlsI GCNGC 1 cut(s) 439
Bme18I GGWCC 1 cut(s) 53
BmeT110I CYCGRG 1 cut(s) 376
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 5 cut(s) 55, 82, 103, 129, 436
BpiI GAAGAC 1 cut(s) 336
BpuEI CTTGAG 2 cut(s) 384, 431
BsaJI CCNNGG 1 cut(s) 318
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 304
BseDI CCNNGG 1 cut(s) 318
BseGI GGATG 2 cut(s) 76, 314
BseLI CCNNNNNNNGG 2 cut(s) 98, 304
BseRI GAGGAG 3 cut(s) 174, 272, 275
BseSI GKGCMC 1 cut(s) 305
BshFI GGCC 1 cut(s) 420
BsiHKAI GWGCWC 2 cut(s) 305, 417
BsiHKCI CYCGRG 1 cut(s) 376
BslI CCNNNNNNNGG 2 cut(s) 98, 304
BsmAI GTCTC 1 cut(s) 409
BsnI GGCC 1 cut(s) 420
BsoBI CYCGRG 1 cut(s) 376
Bsp1286I GDGCHC 2 cut(s) 305, 417
Bsp143I GATC 9 cut(s) 32, 40, 80, 88, 109, 127, 148, 264, 275
BspACI CCGC 2 cut(s) 270, 438
BspANI GGCC 1 cut(s) 420
BspLI GGNNCC 5 cut(s) 55, 82, 103, 129, 436
BspPI GGATC 8 cut(s) 40, 75, 83, 88, 104, 122, 135, 156
BssECI CCNNGG 1 cut(s) 318
BssMI GATC 9 cut(s) 32, 40, 80, 88, 109, 127, 148, 264, 275
BssT1I CCWWGG 1 cut(s) 318
Bst4CI ACNGT 4 cut(s) 118, 307, 359, 392
Bst6I CTCTTC 1 cut(s) 290
BstDEI CTNAG 1 cut(s) 450
BstEII GGTNACC 1 cut(s) 322
BstF5I GGATG 2 cut(s) 76, 314
BstHHI GCGC 1 cut(s) 353
BstKTI GATC 9 cut(s) 35, 43, 83, 91, 112, 130, 151, 267, 278
BstMAI GTCTC 1 cut(s) 409
BstMBI GATC 9 cut(s) 32, 40, 80, 88, 109, 127, 148, 264, 275
BstMWI GCNNNNNNNGC 1 cut(s) 446
BstPI GGTNACC 1 cut(s) 322
BstSFI CTRYAG 1 cut(s) 114
BstSLI GKGCMC 1 cut(s) 305
BstV2I GAAGAC 1 cut(s) 336
BstX2I RGATCY 3 cut(s) 32, 80, 127
BstYI RGATCY 3 cut(s) 32, 80, 127
BsuRI GGCC 1 cut(s) 420
BtsCI GGATG 2 cut(s) 76, 314
CfoI GCGC 1 cut(s) 353
Cfr13I GGNCC 1 cut(s) 53
CviAII CATG 2 cut(s) 152, 246
CviJI RGCY 6 cut(s) 375, 396, 415, 420, 437, 449
CviKI_1 RGCY 6 cut(s) 375, 396, 415, 420, 437, 449
DdeI CTNAG 1 cut(s) 450
DpnI GATC 9 cut(s) 34, 42, 82, 90, 111, 129, 150, 266, 277
DpnII GATC 9 cut(s) 32, 40, 80, 88, 109, 127, 148, 264, 275
Eam1104I CTCTTC 1 cut(s) 290
EarI CTCTTC 1 cut(s) 290
Ecl136II GAGCTC 1 cut(s) 415
Eco130I CCWWGG 1 cut(s) 318
Eco24I GRGCYC 1 cut(s) 417
Eco47I GGWCC 1 cut(s) 53
Eco53kI GAGCTC 1 cut(s) 415
Eco88I CYCGRG 1 cut(s) 376
Eco91I GGTNACC 1 cut(s) 322
EcoICRI GAGCTC 1 cut(s) 415
EcoO65I GGTNACC 1 cut(s) 322
EcoT14I CCWWGG 1 cut(s) 318
EcoT38I GRGCYC 1 cut(s) 417
ErhI CCWWGG 1 cut(s) 318
FaeI CATG 2 cut(s) 155, 249
FaiI YATR 6 cut(s) 153, 164, 177, 209, 247, 355
FalI AAGNNNNNCTT 2 cut(s) 393, 425
FatI CATG 2 cut(s) 151, 245
FauI CCCGC 1 cut(s) 263
Fnu4HI GCNGC 1 cut(s) 438
FokI GGATG 2 cut(s) 83, 301
FriOI GRGCYC 1 cut(s) 417
Fsp4HI GCNGC 1 cut(s) 438
GlaI GCGC 1 cut(s) 352
GluI GCNGC 1 cut(s) 438
HaeIII GGCC 1 cut(s) 420
HhaI GCGC 1 cut(s) 353
Hin1II CATG 2 cut(s) 155, 249
Hin6I GCGC 1 cut(s) 351
HinP1I GCGC 1 cut(s) 351
HincII GTYRAC 1 cut(s) 171
HindII GTYRAC 1 cut(s) 171
HinfI GANTC 1 cut(s) 443
HphI GGTGA 2 cut(s) 179, 319
Hpy166II GTNNAC 2 cut(s) 171, 303
Hpy188I TCNGA 3 cut(s) 15, 93, 434
Hpy188III TCNNGA 3 cut(s) 38, 121, 410
Hpy8I GTNNAC 2 cut(s) 171, 303
Hpy99I CGWCG 1 cut(s) 136
HpyAV CCTTC 2 cut(s) 68, 200
HpyCH4III ACNGT 4 cut(s) 118, 307, 359, 392
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 1 cut(s) 303
HpyF10VI GCNNNNNNNGC 1 cut(s) 446
HpyF3I CTNAG 1 cut(s) 450
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 2 cut(s) 155, 249
HspAI GCGC 1 cut(s) 351
Kzo9I GATC 9 cut(s) 32, 40, 80, 88, 109, 127, 148, 264, 275
LmnI GCTCC 1 cut(s) 434
LpnPI CCDG 1 cut(s) 215
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 3 cut(s) 322, 359, 383
MalI GATC 9 cut(s) 34, 42, 82, 90, 111, 129, 150, 266, 277
MboI GATC 9 cut(s) 32, 40, 80, 88, 109, 127, 148, 264, 275
MboII GAAGA 2 cut(s) 277, 341
MflI RGATCY 3 cut(s) 32, 80, 127
MhlI GDGCHC 2 cut(s) 305, 417
MluCI AATT 1 cut(s) 141
MlyI GAGTC 1 cut(s) 437
MmeI TCCRAC 1 cut(s) 218
MnlI CCTC 9 cut(s) 192, 195, 226, 250, 253, 299, 303, 334, 431
MroXI GAANNNNTTC 1 cut(s) 284
MspA1I CMGCKG 1 cut(s) 270
MwoI GCNNNNNNNGC 1 cut(s) 446
NdeII GATC 9 cut(s) 32, 40, 80, 88, 109, 127, 148, 264, 275
NlaIII CATG 2 cut(s) 155, 249
NlaIV GGNNCC 5 cut(s) 55, 82, 103, 129, 436
NmeAIII GCCGAG 2 cut(s) 396, 425
PcsI WCGNNNNNNNCGW 1 cut(s) 438
PdmI GAANNNNTTC 1 cut(s) 284
PkrI GCNGC 1 cut(s) 439
PleI GAGTC 1 cut(s) 437
PpsI GAGTC 1 cut(s) 437
Psp124BI GAGCTC 1 cut(s) 417
Psp1406I AACGTT 1 cut(s) 18
PspEI GGTNACC 1 cut(s) 322
PspN4I GGNNCC 5 cut(s) 55, 82, 103, 129, 436
PspPI GGNCC 1 cut(s) 53
PsuI RGATCY 3 cut(s) 32, 80, 127
SacI GAGCTC 1 cut(s) 417
SatI GCNGC 1 cut(s) 438
Sau3AI GATC 9 cut(s) 32, 40, 80, 88, 109, 127, 148, 264, 275
Sau96I GGNCC 1 cut(s) 53
SchI GAGTC 1 cut(s) 437
SduI GDGCHC 2 cut(s) 305, 417
SetI ASST 5 cut(s) 21, 79, 192, 243, 417
SfcI CTRYAG 1 cut(s) 114
SinI GGWCC 1 cut(s) 53
SmlI CTYRAG 2 cut(s) 399, 410
SmoI CTYRAG 2 cut(s) 399, 410
Sse9I AATT 1 cut(s) 141
SsiI CCGC 2 cut(s) 270, 438
SstI GAGCTC 1 cut(s) 417
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 4 cut(s) 118, 307, 359, 392
TaiI ACGT 1 cut(s) 21
TaqI TCGA 4 cut(s) 39, 134, 278, 339
TasI AATT 1 cut(s) 141
TauI GCSGC 1 cut(s) 440
TspDTI ATGAA 3 cut(s) 17, 87, 234
TspGWI ACGGA 2 cut(s) 83, 120
VneI GTGCAC 1 cut(s) 301
VpaK11BI GGWCC 1 cut(s) 53
XmnI GAANNNNTTC 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.