Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000483

Physical Location & Seq

Genomic Coordinates Forward (+)

20094145 .. 20094687

Gene Structure 543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00098680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGCGCCTCAATCGAGCGGTATGGGCGGATCGAGGACAAGAATGTCTTCTTTTGGTTCCCGAACCTCAAATCTCGAGAGAGCCGCGGATGAAGGCAATTCGGAAAGTTCGGGTTGGTGGATCTCTCGATCTCAACTTTGGACCCGCTAGTTCTACCGATGAAGGTGGATCCATTGATCTAAACTTTGGTTCCATTAATTCCACTGGTGTTGATGGATCTATCGATCTAGCTTTTGGGTCAAGTGTCGACTATCATGTTGACCCATATTCCTCTTCACCCTTCAACAATAACAACAGTACTACCTCCTTCGGCACAACAGGAGGACAACCTTCCATGGAACAACGAGGAGGAGATCGCCAGGAGATCGAAACTCTTCCTCCGTTCCCCGTGCATAGTGAGGACGTCCTTGGTAACCCGATGACTACTTCCGAGGAAGGTAGCGCATACGGTTACCATTCCGGTGGCTCGGGCAATTACAACGGTGGCTCTCAAGTCTCTCTTGAGCTCAGCCTCAACCCATTCGGAGCCGCCGACTTAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

180

Amino Acids

19.0

Weight (kDa)

4.51

Isoelectric Point (pI)

41.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii	Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa	Rorug04G0280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	42
AatII	GACGTC	1 cut(s)	405
AccBSI	CCGCTC	1 cut(s)	17
AccI	GTMKAC	1 cut(s)	246
AccII	CGCG	1 cut(s)	85
AciI	CCGC	6 cut(s)	17, 26, 83, 85, 144, 528
AclWI	GGATC	5 cut(s)	36, 127, 162, 175, 223
AcyI	GRCGYC	1 cut(s)	402
AfaI	GTAC	1 cut(s)	298
AgsI	TTSAA	1 cut(s)	283
AjnI	CCWGG	1 cut(s)	357
AluBI	AGCT	3 cut(s)	230, 505, 539
AluI	AGCT	3 cut(s)	230, 505, 539
Alw21I	GWGCWC	1 cut(s)	507
Alw26I	GTCTC	1 cut(s)	499
AlwI	GGATC	5 cut(s)	36, 127, 162, 175, 223
Ama87I	CYCGRG	2 cut(s)	73, 466
AseI	ATTAAT	1 cut(s)	195
Asp700I	GAANNNNTTC	2 cut(s)	45, 372
AspLEI	GCGC	2 cut(s)	6, 443
AspS9I	GGNCC	1 cut(s)	140
AsuHPI	GGTGA	1 cut(s)	267
AvaI	CYCGRG	2 cut(s)	73, 466
AvaII	GGWCC	1 cut(s)	140
BamHI	GGATCC	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	507
BbsI	GAAGAC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	507
BccI	CCATC	1 cut(s)	206
BciT130I	CCWGG	1 cut(s)	359
BcoDI	GTCTC	1 cut(s)	499
BfaI	CTAG	2 cut(s)	147, 227
BisI	GCNGC	2 cut(s)	83, 528
BlpI	GCTNAGC	1 cut(s)	506
BlsI	GCNGC	2 cut(s)	84, 529
BmcAI	AGTACT	1 cut(s)	298
Bme1390I	CCNGG	1 cut(s)	359
Bme18I	GGWCC	1 cut(s)	140
BmeT110I	CYCGRG	2 cut(s)	73, 466
BmgT120I	GGNCC	1 cut(s)	140
BmiI	GGNNCC	5 cut(s)	57, 142, 169, 190, 526
BmrFI	CCNGG	1 cut(s)	359
BpiI	GAAGAC	1 cut(s)	38
Bpu1102I	GCTNAGC	1 cut(s)	506
BpuEI	CTTGAG	2 cut(s)	474, 521
Bsa29I	ATCGAT	1 cut(s)	222
BsaHI	GRCGYC	1 cut(s)	402
BsaJI	CCNNGG	4 cut(s)	83, 333, 406, 429
BsaWI	WCCGGW	1 cut(s)	458
BsaXI	ACNNNNNCTCC	2 cut(s)	361, 391
Bse1I	ACTGG	1 cut(s)	208
BseBI	CCWGG	1 cut(s)	359
BseCI	ATCGAT	1 cut(s)	222
BseDI	CCNNGG	4 cut(s)	83, 333, 406, 429
BseGI	GGATG	1 cut(s)	93
BseMII	CTCAG	1 cut(s)	520
BseNI	ACTGG	1 cut(s)	208
BseRI	GAGGAG	2 cut(s)	360, 363
Bsh1236I	CGCG	1 cut(s)	85
BshVI	ATCGAT	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	507
BsiHKCI	CYCGRG	2 cut(s)	73, 466
BsiSI	CCGG	1 cut(s)	459
BsmAI	GTCTC	1 cut(s)	499
BsoBI	CYCGRG	2 cut(s)	73, 466
Bsp1286I	GDGCHC	1 cut(s)	507
Bsp143I	GATC	9 cut(s)	28, 119, 127, 167, 175, 215, 223, 352, 363
Bsp1720I	GCTNAGC	1 cut(s)	506
Bsp19I	CCATGG	1 cut(s)	333
BspACI	CCGC	6 cut(s)	17, 26, 83, 85, 144, 528
BspCNI	CTCAG	1 cut(s)	519
BspDI	ATCGAT	1 cut(s)	222
BspFNI	CGCG	1 cut(s)	85
BspLI	GGNNCC	5 cut(s)	57, 142, 169, 190, 526
BspPI	GGATC	5 cut(s)	36, 127, 162, 175, 223
BsrBI	CCGCTC	1 cut(s)	17
BsrI	ACTGG	1 cut(s)	208
BssECI	CCNNGG	4 cut(s)	83, 333, 406, 429
BssMI	GATC	9 cut(s)	28, 119, 127, 167, 175, 215, 223, 352, 363
BssNI	GRCGYC	1 cut(s)	402
BssT1I	CCWWGG	2 cut(s)	333, 406
Bst2UI	CCWGG	1 cut(s)	359
Bst4CI	ACNGT	3 cut(s)	296, 449, 482
Bst6I	CTCTTC	2 cut(s)	277, 378
BstACI	GRCGYC	1 cut(s)	402
BstDEI	CTNAG	3 cut(s)	506, 535, 540
BstDSI	CCRYGG	2 cut(s)	83, 333
BstEII	GGTNACC	2 cut(s)	410, 449
BstF5I	GGATG	1 cut(s)	93
BstFNI	CGCG	1 cut(s)	85
BstHHI	GCGC	2 cut(s)	6, 443
BstKTI	GATC	9 cut(s)	31, 122, 130, 170, 178, 218, 226, 355, 366
BstMAI	GTCTC	1 cut(s)	499
BstMBI	GATC	9 cut(s)	28, 119, 127, 167, 175, 215, 223, 352, 363
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 536
BstNI	CCWGG	1 cut(s)	359
BstPI	GGTNACC	2 cut(s)	410, 449
BstSCI	CCNGG	1 cut(s)	357
BstUI	CGCG	1 cut(s)	85
BstV2I	GAAGAC	1 cut(s)	38
BstX2I	RGATCY	3 cut(s)	119, 167, 215
BstXI	CCANNNNNNTGG	1 cut(s)	461
BstYI	RGATCY	3 cut(s)	119, 167, 215
Bsu15I	ATCGAT	1 cut(s)	222
BsuTUI	ATCGAT	1 cut(s)	222
BtgI	CCRYGG	2 cut(s)	83, 333
BtsCI	GGATG	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	201
CfoI	GCGC	2 cut(s)	6, 443
Cfr13I	GGNCC	1 cut(s)	140
Cfr42I	CCGCGG	1 cut(s)	86
ClaI	ATCGAT	1 cut(s)	222
Csp6I	GTAC	1 cut(s)	297
CspCI	CAANNNNNGTGG	2 cut(s)	190, 225
CviAII	CATG	2 cut(s)	254, 334
CviJI	RGCY	8 cut(s)	82, 230, 465, 486, 505, 510, 527, 539
CviKI_1	RGCY	8 cut(s)	82, 230, 465, 486, 505, 510, 527, 539
CviQI	GTAC	1 cut(s)	297
DdeI	CTNAG	3 cut(s)	506, 535, 540
DpnI	GATC	9 cut(s)	30, 121, 129, 169, 177, 217, 225, 354, 365
DpnII	GATC	9 cut(s)	28, 119, 127, 167, 175, 215, 223, 352, 363
DrdI	GACNNNNNNGTC	1 cut(s)	42
DseDI	GACNNNNNNGTC	1 cut(s)	42
Eam1104I	CTCTTC	2 cut(s)	277, 378
EarI	CTCTTC	2 cut(s)	277, 378
EciI	GGCGGA	1 cut(s)	41
Ecl136II	GAGCTC	1 cut(s)	505
Eco130I	CCWWGG	2 cut(s)	333, 406
Eco24I	GRGCYC	1 cut(s)	507
Eco47I	GGWCC	1 cut(s)	140
Eco53kI	GAGCTC	1 cut(s)	505
Eco88I	CYCGRG	2 cut(s)	73, 466
Eco91I	GGTNACC	2 cut(s)	410, 449
EcoICRI	GAGCTC	1 cut(s)	505
EcoO65I	GGTNACC	2 cut(s)	410, 449
EcoRII	CCWGG	1 cut(s)	357
EcoT14I	CCWWGG	2 cut(s)	333, 406
EcoT38I	GRGCYC	1 cut(s)	507
ErhI	CCWWGG	2 cut(s)	333, 406
FaeI	CATG	2 cut(s)	257, 337
FaiI	YATR	6 cut(s)	22, 255, 265, 335, 393, 445
FalI	AAGNNNNNCTT	4 cut(s)	30, 62, 483, 515
FatI	CATG	2 cut(s)	253, 333
FauI	CCCGC	1 cut(s)	151
FblI	GTMKAC	1 cut(s)	246
Fnu4HI	GCNGC	2 cut(s)	83, 528
FokI	GGATG	1 cut(s)	100
FriOI	GRGCYC	1 cut(s)	507
Fsp4HI	GCNGC	2 cut(s)	83, 528
FspBI	CTAG	2 cut(s)	147, 227
GlaI	GCGC	2 cut(s)	5, 442
GluI	GCNGC	2 cut(s)	83, 528
HapII	CCGG	1 cut(s)	459
HhaI	GCGC	2 cut(s)	6, 443
Hin1I	GRCGYC	1 cut(s)	402
Hin1II	CATG	2 cut(s)	257, 337
Hin6I	GCGC	2 cut(s)	4, 441
HinP1I	GCGC	2 cut(s)	4, 441
HincII	GTYRAC	2 cut(s)	247, 259
HindII	GTYRAC	2 cut(s)	247, 259
HpaII	CCGG	1 cut(s)	459
HphI	GGTGA	1 cut(s)	267
Hpy166II	GTNNAC	2 cut(s)	247, 259
Hpy188I	TCNGA	3 cut(s)	102, 430, 524
Hpy188III	TCNNGA	5 cut(s)	59, 73, 75, 125, 500
Hpy8I	GTNNAC	2 cut(s)	247, 259
HpyAV	CCTTC	6 cut(s)	85, 155, 289, 316, 339, 428
HpyCH4III	ACNGT	3 cut(s)	296, 449, 482
HpyCH4IV	ACGT	1 cut(s)	402
HpyCH4V	TGCA	1 cut(s)	391
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 536
HpyF3I	CTNAG	3 cut(s)	506, 535, 540
HpySE526I	ACGT	1 cut(s)	402
Hsp92I	GRCGYC	1 cut(s)	402
Hsp92II	CATG	2 cut(s)	257, 337
HspAI	GCGC	2 cut(s)	4, 441
KspI	CCGCGG	1 cut(s)	86
Kzo9I	GATC	9 cut(s)	28, 119, 127, 167, 175, 215, 223, 352, 363
LmnI	GCTCC	1 cut(s)	524
LpnPI	CCDG	5 cut(s)	189, 303, 344, 371, 472
MaeI	CTAG	2 cut(s)	147, 227
MaeII	ACGT	1 cut(s)	402
MaeIII	GTNAC	2 cut(s)	410, 449
MalI	GATC	9 cut(s)	30, 121, 129, 169, 177, 217, 225, 354, 365
MbiI	CCGCTC	1 cut(s)	17
MboI	GATC	9 cut(s)	28, 119, 127, 167, 175, 215, 223, 352, 363
MboII	GAAGA	3 cut(s)	38, 264, 365
MflI	RGATCY	3 cut(s)	119, 167, 215
MhlI	GDGCHC	1 cut(s)	507
MluCI	AATT	3 cut(s)	96, 196, 472
MroXI	GAANNNNTTC	2 cut(s)	45, 372
MseI	TTAA	1 cut(s)	195
MslI	CAYNNNNRTG	1 cut(s)	459
MspA1I	CMGCKG	1 cut(s)	85
MspI	CCGG	1 cut(s)	459
MspR9I	CCNGG	1 cut(s)	359
MvaI	CCWGG	1 cut(s)	359
MvnI	CGCG	1 cut(s)	85
MwoI	GCNNNNNNNGC	2 cut(s)	23, 536
NcoI	CCATGG	1 cut(s)	333
NdeII	GATC	9 cut(s)	28, 119, 127, 167, 175, 215, 223, 352, 363
NlaIII	CATG	2 cut(s)	257, 337
NlaIV	GGNNCC	5 cut(s)	57, 142, 169, 190, 526
PaeR7I	CTCGAG	1 cut(s)	73
PcsI	WCGNNNNNNNCGW	1 cut(s)	528
PdmI	GAANNNNTTC	2 cut(s)	45, 372
PkrI	GCNGC	2 cut(s)	84, 529
PshBI	ATTAAT	1 cut(s)	195
Psp124BI	GAGCTC	1 cut(s)	507
Psp6I	CCWGG	1 cut(s)	357
PspEI	GGTNACC	2 cut(s)	410, 449
PspGI	CCWGG	1 cut(s)	357
PspN4I	GGNNCC	5 cut(s)	57, 142, 169, 190, 526
PspPI	GGNCC	1 cut(s)	140
PsuI	RGATCY	3 cut(s)	119, 167, 215
RsaI	GTAC	1 cut(s)	298
RsaNI	GTAC	1 cut(s)	297
RseI	CAYNNNNRTG	1 cut(s)	459
SacI	GAGCTC	1 cut(s)	507
SacII	CCGCGG	1 cut(s)	86
SalI	GTCGAC	1 cut(s)	245
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	2 cut(s)	83, 528
Sau3AI	GATC	9 cut(s)	28, 119, 127, 167, 175, 215, 223, 352, 363
Sau96I	GGNCC	1 cut(s)	140
ScaI	AGTACT	1 cut(s)	298
ScrFI	CCNGG	1 cut(s)	359
SduI	GDGCHC	1 cut(s)	507
SetI	ASST	9 cut(s)	67, 166, 232, 305, 331, 405, 439, 507, 541
Sfr274I	CTCGAG	1 cut(s)	73
Sfr303I	CCGCGG	1 cut(s)	86
SgrBI	CCGCGG	1 cut(s)	86
SinI	GGWCC	1 cut(s)	140
SlaI	CTCGAG	1 cut(s)	73
SmiMI	CAYNNNNRTG	1 cut(s)	459
SmlI	CTYRAG	3 cut(s)	73, 489, 500
SmoI	CTYRAG	3 cut(s)	73, 489, 500
Sse9I	AATT	3 cut(s)	96, 196, 472
SsiI	CCGC	6 cut(s)	17, 26, 83, 85, 144, 528
SspMI	CTAG	2 cut(s)	147, 227
SstI	GAGCTC	1 cut(s)	507
StyD4I	CCNGG	1 cut(s)	357
StyI	CCWWGG	2 cut(s)	333, 406
TaaI	ACNGT	3 cut(s)	296, 449, 482
TaiI	ACGT	1 cut(s)	405
TaqI	TCGA	7 cut(s)	13, 31, 74, 126, 222, 246, 366
TasI	AATT	3 cut(s)	96, 196, 472
TatI	WGTACW	1 cut(s)	296
TauI	GCSGC	2 cut(s)	85, 530
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	1 cut(s)	208
TspDTI	ATGAA	2 cut(s)	104, 174
TspGWI	ACGGA	1 cut(s)	369
TspRI	CASTG	1 cut(s)	208
VpaK11BI	GGWCC	1 cut(s)	140
VspI	ATTAAT	1 cut(s)	195
XhoI	CTCGAG	1 cut(s)	73
XmiI	GTMKAC	1 cut(s)	246
XmnI	GAANNNNTTC	2 cut(s)	45, 372
XspI	CTAG	2 cut(s)	147, 227
ZraI	GACGTC	1 cut(s)	403
ZrmI	AGTACT	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.