Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000483

Physical Location & Seq

Genomic Coordinates Forward (+)

29049737 .. 29050174

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00239210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGAACCACGAACTCTTCAACTATTGGAGCCTCAAACCCAAGAACAAACGGAATTTCAGGCCCCGCAACCAACCGAGGAGGGAGGAAGCAACCAAACAGCCGGAAGTAGTGCCAATCCGTCCCTCGTACGACCTAATACCAGCCGGGCTCCCACACCGCCTCAACTAAGAATCCTCAAGGGCCTTTACTATGATAAGGGCTTTAAGCGTCCAACCCCGGAGCAGATTCAAGAGATCGGCCTCAATACGCGCTTTGGGCCGATCGAGGACAAGAACGTCTTCTTTTGGTTCCGTAACCTCAAATCCCGAGAGAGCCAACAGATGAAGGCATTTCGGAACGTGCGGGTTGGTGGGTCTCTCGATCTTAACTTTGGACCCGCAAGTTCTGCGGATGAAGGTGGATCCATTGCTCGAACTTTGGTTCCACCGATCCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

145

Amino Acids

16.13

Weight (kDa)

9.15

Isoelectric Point (pI)

60.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii	Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa	Rorug04G0280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	275
AccII	CGCG	1 cut(s)	250
AciI	CCGC	5 cut(s)	65, 158, 343, 378, 389
AclWI	GGATC	3 cut(s)	396, 409, 424
AcsI	RAATTY	1 cut(s)	53
AfaI	GTAC	1 cut(s)	129
AgsI	TTSAA	2 cut(s)	20, 230
AloI	GAACNNNNNNTCC	2 cut(s)	406, 438
Alw26I	GTCTC	1 cut(s)	360
AlwI	GGATC	3 cut(s)	396, 409, 424
Ama87I	CYCGRG	1 cut(s)	306
AoxI	GGCC	4 cut(s)	60, 181, 238, 257
ApoI	RAATTY	1 cut(s)	53
Asp700I	GAANNNNTTC	1 cut(s)	278
AspLEI	GCGC	1 cut(s)	252
AspS9I	GGNCC	4 cut(s)	61, 181, 257, 374
AsuC2I	CCSGG	2 cut(s)	146, 218
AvaI	CYCGRG	1 cut(s)	306
AvaII	GGWCC	1 cut(s)	374
BamHI	GGATCC	1 cut(s)	401
BanII	GRGCYC	1 cut(s)	151
BbsI	GAAGAC	1 cut(s)	271
BcnI	CCSGG	2 cut(s)	146, 218
BcoDI	GTCTC	1 cut(s)	360
Bme1390I	CCNGG	2 cut(s)	146, 218
Bme18I	GGWCC	1 cut(s)	374
BmeT110I	CYCGRG	1 cut(s)	306
BmgT120I	GGNCC	4 cut(s)	61, 181, 257, 374
BmiI	GGNNCC	8 cut(s)	6, 30, 63, 150, 290, 376, 403, 423
BmrFI	CCNGG	2 cut(s)	146, 218
BpiI	GAAGAC	1 cut(s)	271
BpuEI	CTTGAG	1 cut(s)	161
BpuMI	CCSGG	2 cut(s)	146, 218
BsaI	GGTCTC	1 cut(s)	360
BsaJI	CCNNGG	2 cut(s)	75, 216
Bse3DI	GCAATG	1 cut(s)	405
BseDI	CCNNGG	2 cut(s)	75, 216
BseGI	GGATG	1 cut(s)	397
BseMI	GCAATG	1 cut(s)	405
BseRI	GAGGAG	1 cut(s)	92
Bsh1236I	CGCG	1 cut(s)	250
Bsh1285I	CGRYCG	1 cut(s)	264
BshFI	GGCC	4 cut(s)	62, 183, 240, 259
BsiEI	CGRYCG	1 cut(s)	264
BsiHKCI	CYCGRG	1 cut(s)	306
BsiSI	CCGG	3 cut(s)	102, 145, 218
BsiWI	CGTACG	1 cut(s)	127
BslFI	GGGAC	1 cut(s)	106
BsmAI	GTCTC	1 cut(s)	360
BsmFI	GGGAC	1 cut(s)	106
BsnI	GGCC	4 cut(s)	62, 183, 240, 259
Bso31I	GGTCTC	1 cut(s)	360
BsoBI	CYCGRG	1 cut(s)	306
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp143I	GATC	5 cut(s)	234, 261, 361, 401, 429
BspACI	CCGC	5 cut(s)	65, 158, 343, 378, 389
BspANI	GGCC	4 cut(s)	62, 183, 240, 259
BspFNI	CGCG	1 cut(s)	250
BspLI	GGNNCC	8 cut(s)	6, 30, 63, 150, 290, 376, 403, 423
BspPI	GGATC	3 cut(s)	396, 409, 424
BspTNI	GGTCTC	1 cut(s)	360
BsrDI	GCAATG	1 cut(s)	405
BssECI	CCNNGG	2 cut(s)	75, 216
BssMI	GATC	5 cut(s)	234, 261, 361, 401, 429
Bst6I	CTCTTC	1 cut(s)	21
BstAPI	GCANNNNNTGC	1 cut(s)	386
BstDEI	CTNAG	1 cut(s)	167
BstF5I	GGATG	1 cut(s)	397
BstFNI	CGCG	1 cut(s)	250
BstHHI	GCGC	1 cut(s)	252
BstKTI	GATC	5 cut(s)	237, 264, 364, 404, 432
BstMAI	GTCTC	1 cut(s)	360
BstMBI	GATC	5 cut(s)	234, 261, 361, 401, 429
BstMCI	CGRYCG	1 cut(s)	264
BstMWI	GCNNNNNNNGC	2 cut(s)	256, 386
BstSCI	CCNGG	2 cut(s)	144, 216
BstUI	CGCG	1 cut(s)	250
BstV2I	GAAGAC	1 cut(s)	271
BstX2I	RGATCY	1 cut(s)	401
BstYI	RGATCY	1 cut(s)	401
BsuRI	GGCC	4 cut(s)	62, 183, 240, 259
BtsCI	GGATG	1 cut(s)	397
CfoI	GCGC	1 cut(s)	252
Cfr13I	GGNCC	4 cut(s)	61, 181, 257, 374
CseI	GACGC	1 cut(s)	197
Csp6I	GTAC	1 cut(s)	128
CviQI	GTAC	1 cut(s)	128
DdeI	CTNAG	1 cut(s)	167
DpnI	GATC	5 cut(s)	236, 263, 363, 403, 431
DpnII	GATC	5 cut(s)	234, 261, 361, 401, 429
DrdI	GACNNNNNNGTC	1 cut(s)	275
DseDI	GACNNNNNNGTC	1 cut(s)	275
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Eco24I	GRGCYC	1 cut(s)	151
Eco31I	GGTCTC	1 cut(s)	360
Eco47I	GGWCC	1 cut(s)	374
Eco88I	CYCGRG	1 cut(s)	306
EcoO109I	RGGNCCY	2 cut(s)	61, 181
EcoT38I	GRGCYC	1 cut(s)	151
FaiI	YATR	1 cut(s)	192
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FaqI	GGGAC	1 cut(s)	106
FauI	CCCGC	3 cut(s)	72, 336, 385
FokI	GGATG	1 cut(s)	404
FriOI	GRGCYC	1 cut(s)	151
GlaI	GCGC	1 cut(s)	251
HaeIII	GGCC	4 cut(s)	62, 183, 240, 259
HapII	CCGG	3 cut(s)	102, 145, 218
HgaI	GACGC	1 cut(s)	197
HhaI	GCGC	1 cut(s)	252
Hin6I	GCGC	1 cut(s)	250
HinP1I	GCGC	1 cut(s)	250
HinfI	GANTC	2 cut(s)	171, 226
HpaII	CCGG	3 cut(s)	102, 145, 218
Hpy188I	TCNGA	1 cut(s)	336
Hpy188III	TCNNGA	3 cut(s)	230, 306, 359
HpyAV	CCTTC	2 cut(s)	319, 389
HpyCH4IV	ACGT	2 cut(s)	276, 339
HpyF10VI	GCNNNNNNNGC	2 cut(s)	256, 386
HpyF3I	CTNAG	1 cut(s)	167
HpySE526I	ACGT	2 cut(s)	276, 339
HspAI	GCGC	1 cut(s)	250
Kzo9I	GATC	5 cut(s)	234, 261, 361, 401, 429
LmnI	GCTCC	3 cut(s)	28, 154, 220
LpnPI	CCDG	5 cut(s)	44, 115, 154, 158, 231
MaeII	ACGT	2 cut(s)	276, 339
MaeIII	GTNAC	1 cut(s)	293
MalI	GATC	5 cut(s)	236, 263, 363, 403, 431
MboI	GATC	5 cut(s)	234, 261, 361, 401, 429
MboII	GAAGA	2 cut(s)	8, 271
MflI	RGATCY	1 cut(s)	401
MhlI	GDGCHC	1 cut(s)	151
MluCI	AATT	1 cut(s)	53
MmeI	TCCRAC	1 cut(s)	236
MroXI	GAANNNNTTC	1 cut(s)	278
MseI	TTAA	2 cut(s)	204, 366
MspI	CCGG	3 cut(s)	102, 145, 218
MspR9I	CCNGG	2 cut(s)	146, 218
MvnI	CGCG	1 cut(s)	250
MwoI	GCNNNNNNNGC	2 cut(s)	256, 386
NciI	CCSGG	2 cut(s)	146, 218
NdeII	GATC	5 cut(s)	234, 261, 361, 401, 429
NlaIV	GGNNCC	8 cut(s)	6, 30, 63, 150, 290, 376, 403, 423
PdmI	GAANNNNTTC	1 cut(s)	278
PfeI	GAWTC	2 cut(s)	171, 226
Pfl23II	CGTACG	1 cut(s)	127
Ple19I	CGATCG	1 cut(s)	264
PspLI	CGTACG	1 cut(s)	127
PspN4I	GGNNCC	8 cut(s)	6, 30, 63, 150, 290, 376, 403, 423
PspPI	GGNCC	4 cut(s)	61, 181, 257, 374
PsuI	RGATCY	1 cut(s)	401
PvuI	CGATCG	1 cut(s)	264
RsaI	GTAC	1 cut(s)	129
RsaNI	GTAC	1 cut(s)	128
SaqAI	TTAA	2 cut(s)	204, 366
Sau3AI	GATC	5 cut(s)	234, 261, 361, 401, 429
Sau96I	GGNCC	4 cut(s)	61, 181, 257, 374
ScrFI	CCNGG	2 cut(s)	146, 218
SduI	GDGCHC	1 cut(s)	151
SetI	ASST	5 cut(s)	136, 279, 300, 342, 400
SinI	GGWCC	1 cut(s)	374
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	1 cut(s)	53
SsiI	CCGC	5 cut(s)	65, 158, 343, 378, 389
StyD4I	CCNGG	2 cut(s)	144, 216
TaiI	ACGT	2 cut(s)	279, 342
TaqI	TCGA	3 cut(s)	264, 360, 412
TasI	AATT	1 cut(s)	53
TfiI	GAWTC	2 cut(s)	171, 226
Tru1I	TTAA	2 cut(s)	204, 366
Tru9I	TTAA	2 cut(s)	204, 366
TspDTI	ATGAA	2 cut(s)	338, 408
TspGWI	ACGGA	3 cut(s)	65, 108, 281
VpaK11BI	GGWCC	1 cut(s)	374
XapI	RAATTY	1 cut(s)	53
XmnI	GAANNNNTTC	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.