Rroxscaffold_6G00390470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000483
Physical Location & Seq
Forward (+)
5512336 .. 5512785
450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00390470.1

Sequence Viewer

Length: 450 bp
ATGAAGGCATTTCGGAACGTGCGGGTTGGCGGATCTCTCGATCTCAACTTTGGACCCGCAAGTTCTACGGATGAAGGTGGATCCATCGATCCGAACTTTGGTCCCATTGTTTCTACGGTGCCGATGGATCCATCTATCTCGCTTTCGGGGTCAAACGTCGACCATCCCGTCGACCCGAATTCCACTTCACCCTTCAATAATAACCACAGTACTACCTCATTCGGCACAACGGAGGACAACTTTCTATGGAACAACGAGGAGGAGATCAGCAGGAGATCGAAACTCTTCCTCTCGTTCCCCGTGTATAGGGAGGACATCTTTGGTAACCCGATGACTACTTCGAGGAAGGTAGCGCATACGGTTACTATCCCGGTGGCTCGGGGCAGTCACAACGGTGGCTCTCAAGTCTCTCTTGAGCTCGGCCTCAACCCATCCGAGCCGCCGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.01

Weight (kDa)

5.04

Isoelectric Point (pI)

41.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000483)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa Rorug04G0280300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 167
AccB1I GGYRCC 1 cut(s) 118
AccI GTMKAC 2 cut(s) 159, 171
AciI CCGC 4 cut(s) 22, 30, 57, 440
AclWI GGATC 6 cut(s) 40, 75, 83, 88, 122, 135
AcsI RAATTY 1 cut(s) 178
AfaI GTAC 1 cut(s) 211
AfiI CCNNNNNNNGG 2 cut(s) 98, 306
AgsI TTSAA 1 cut(s) 196
AleI CACNNNNGTG 1 cut(s) 393
AluBI AGCT 1 cut(s) 418
AluI AGCT 1 cut(s) 418
Alw21I GWGCWC 1 cut(s) 420
Alw26I GTCTC 1 cut(s) 412
AlwI GGATC 6 cut(s) 40, 75, 83, 88, 122, 135
Ama87I CYCGRG 1 cut(s) 378
AoxI GGCC 1 cut(s) 421
ApoI RAATTY 1 cut(s) 178
Asp700I GAANNNNTTC 1 cut(s) 284
AspLEI GCGC 1 cut(s) 355
AspS9I GGNCC 2 cut(s) 53, 101
AsuC2I CCSGG 1 cut(s) 371
AsuHPI GGTGA 1 cut(s) 180
AvaI CYCGRG 1 cut(s) 378
AvaII GGWCC 2 cut(s) 53, 101
BamHI GGATCC 2 cut(s) 80, 127
BanI GGYRCC 1 cut(s) 118
BanII GRGCYC 1 cut(s) 420
Bbv12I GWGCWC 1 cut(s) 420
BccI CCATC 5 cut(s) 92, 118, 139, 171, 439
BcnI CCSGG 1 cut(s) 371
BcoDI GTCTC 1 cut(s) 412
BisI GCNGC 1 cut(s) 440
BlsI GCNGC 1 cut(s) 441
BmcAI AGTACT 1 cut(s) 211
Bme1390I CCNGG 1 cut(s) 371
Bme18I GGWCC 2 cut(s) 53, 101
BmeT110I CYCGRG 1 cut(s) 378
BmgT120I GGNCC 2 cut(s) 53, 101
BmiI GGNNCC 5 cut(s) 55, 82, 103, 120, 129
BmrFI CCNGG 1 cut(s) 371
BpuEI CTTGAG 2 cut(s) 387, 434
BpuMI CCSGG 1 cut(s) 371
Bsa29I ATCGAT 1 cut(s) 87
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 306
BseCI ATCGAT 1 cut(s) 87
BseGI GGATG 3 cut(s) 76, 163, 431
BseLI CCNNNNNNNGG 2 cut(s) 98, 306
BseRI GAGGAG 2 cut(s) 272, 275
BshFI GGCC 1 cut(s) 423
BshNI GGYRCC 1 cut(s) 118
BshVI ATCGAT 1 cut(s) 87
BsiHKAI GWGCWC 1 cut(s) 420
BsiHKCI CYCGRG 1 cut(s) 378
BsiSI CCGG 1 cut(s) 371
BslFI GGGAC 1 cut(s) 87
BslI CCNNNNNNNGG 2 cut(s) 98, 306
BsmAI GTCTC 1 cut(s) 412
BsmFI GGGAC 1 cut(s) 87
BsnI GGCC 1 cut(s) 423
BsoBI CYCGRG 1 cut(s) 378
Bsp1286I GDGCHC 1 cut(s) 420
Bsp143I GATC 7 cut(s) 32, 40, 80, 88, 127, 264, 275
BspACI CCGC 4 cut(s) 22, 30, 57, 440
BspANI GGCC 1 cut(s) 423
BspDI ATCGAT 1 cut(s) 87
BspLI GGNNCC 5 cut(s) 55, 82, 103, 120, 129
BspPI GGATC 6 cut(s) 40, 75, 83, 88, 122, 135
BspT107I GGYRCC 1 cut(s) 118
BssMI GATC 7 cut(s) 32, 40, 80, 88, 127, 264, 275
Bst4CI ACNGT 4 cut(s) 118, 209, 361, 395
Bst6I CTCTTC 1 cut(s) 290
BstDEI CTNAG 1 cut(s) 447
BstEII GGTNACC 1 cut(s) 323
BstF5I GGATG 3 cut(s) 76, 163, 431
BstHHI GCGC 1 cut(s) 355
BstKTI GATC 7 cut(s) 35, 43, 83, 91, 130, 267, 278
BstMAI GTCTC 1 cut(s) 412
BstMBI GATC 7 cut(s) 32, 40, 80, 88, 127, 264, 275
BstPI GGTNACC 1 cut(s) 323
BstSCI CCNGG 1 cut(s) 369
BstX2I RGATCY 3 cut(s) 32, 80, 127
BstYI RGATCY 3 cut(s) 32, 80, 127
Bsu15I ATCGAT 1 cut(s) 87
BsuRI GGCC 1 cut(s) 423
BsuTUI ATCGAT 1 cut(s) 87
BtsCI GGATG 3 cut(s) 76, 163, 431
CfoI GCGC 1 cut(s) 355
Cfr13I GGNCC 2 cut(s) 53, 101
ClaI ATCGAT 1 cut(s) 87
Csp6I GTAC 1 cut(s) 210
CviJI RGCY 5 cut(s) 377, 399, 418, 423, 439
CviKI_1 RGCY 5 cut(s) 377, 399, 418, 423, 439
CviQI GTAC 1 cut(s) 210
DdeI CTNAG 1 cut(s) 447
DpnI GATC 7 cut(s) 34, 42, 82, 90, 129, 266, 277
DpnII GATC 7 cut(s) 32, 40, 80, 88, 127, 264, 275
DrdI GACNNNNNNGTC 1 cut(s) 167
DseDI GACNNNNNNGTC 1 cut(s) 167
Eam1104I CTCTTC 1 cut(s) 290
EarI CTCTTC 1 cut(s) 290
EciI GGCGGA 1 cut(s) 45
Ecl136II GAGCTC 1 cut(s) 418
Eco24I GRGCYC 1 cut(s) 420
Eco47I GGWCC 2 cut(s) 53, 101
Eco53kI GAGCTC 1 cut(s) 418
Eco88I CYCGRG 1 cut(s) 378
Eco91I GGTNACC 1 cut(s) 323
EcoICRI GAGCTC 1 cut(s) 418
EcoO65I GGTNACC 1 cut(s) 323
EcoRI GAATTC 1 cut(s) 178
EcoT38I GRGCYC 1 cut(s) 420
FaiI YATR 3 cut(s) 247, 306, 357
FalI AAGNNNNNCTT 2 cut(s) 396, 428
FaqI GGGAC 1 cut(s) 87
FauI CCCGC 2 cut(s) 15, 64
FblI GTMKAC 2 cut(s) 159, 171
Fnu4HI GCNGC 1 cut(s) 440
FokI GGATG 3 cut(s) 83, 150, 418
FriOI GRGCYC 1 cut(s) 420
Fsp4HI GCNGC 1 cut(s) 440
GlaI GCGC 1 cut(s) 354
GluI GCNGC 1 cut(s) 440
HaeIII GGCC 1 cut(s) 423
HapII CCGG 1 cut(s) 371
HhaI GCGC 1 cut(s) 355
Hin6I GCGC 1 cut(s) 353
HinP1I GCGC 1 cut(s) 353
HincII GTYRAC 2 cut(s) 160, 172
HindII GTYRAC 2 cut(s) 160, 172
HpaII CCGG 1 cut(s) 371
HphI GGTGA 1 cut(s) 180
Hpy166II GTNNAC 2 cut(s) 160, 172
Hpy188I TCNGA 3 cut(s) 15, 93, 436
Hpy188III TCNNGA 2 cut(s) 38, 413
Hpy8I GTNNAC 2 cut(s) 160, 172
Hpy99I CGWCG 2 cut(s) 161, 173
HpyAV CCTTC 3 cut(s) 68, 202, 340
HpyCH4III ACNGT 4 cut(s) 118, 209, 361, 395
HpyCH4IV ACGT 2 cut(s) 18, 156
HpyF3I CTNAG 1 cut(s) 447
HpySE526I ACGT 2 cut(s) 18, 156
HspAI GCGC 1 cut(s) 353
Kzo9I GATC 7 cut(s) 32, 40, 80, 88, 127, 264, 275
LpnPI CCDG 2 cut(s) 256, 384
MaeII ACGT 2 cut(s) 18, 156
MaeIII GTNAC 3 cut(s) 323, 361, 386
MalI GATC 7 cut(s) 34, 42, 82, 90, 129, 266, 277
MboI GATC 7 cut(s) 32, 40, 80, 88, 127, 264, 275
MboII GAAGA 1 cut(s) 277
MflI RGATCY 3 cut(s) 32, 80, 127
MhlI GDGCHC 1 cut(s) 420
MluCI AATT 1 cut(s) 178
MnlI CCTC 8 cut(s) 226, 226, 250, 253, 299, 304, 336, 434
MroXI GAANNNNTTC 1 cut(s) 284
MslI CAYNNNNRTG 1 cut(s) 393
MspI CCGG 1 cut(s) 371
MspR9I CCNGG 1 cut(s) 371
NciI CCSGG 1 cut(s) 371
NdeII GATC 7 cut(s) 32, 40, 80, 88, 127, 264, 275
NlaIV GGNNCC 5 cut(s) 55, 82, 103, 120, 129
NmeAIII GCCGAG 1 cut(s) 399
NmuCI GTSAC 1 cut(s) 386
OliI CACNNNNGTG 1 cut(s) 393
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PdmI GAANNNNTTC 1 cut(s) 284
PkrI GCNGC 1 cut(s) 441
Psp124BI GAGCTC 1 cut(s) 420
PspEI GGTNACC 1 cut(s) 323
PspN4I GGNNCC 5 cut(s) 55, 82, 103, 120, 129
PspPI GGNCC 2 cut(s) 53, 101
PsuI RGATCY 3 cut(s) 32, 80, 127
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
RseI CAYNNNNRTG 1 cut(s) 393
SacI GAGCTC 1 cut(s) 420
SalI GTCGAC 2 cut(s) 158, 170
SatI GCNGC 1 cut(s) 440
Sau3AI GATC 7 cut(s) 32, 40, 80, 88, 127, 264, 275
Sau96I GGNCC 2 cut(s) 53, 101
ScaI AGTACT 1 cut(s) 211
ScrFI CCNGG 1 cut(s) 371
SduI GDGCHC 1 cut(s) 420
SetI ASST 6 cut(s) 21, 79, 159, 218, 351, 420
SinI GGWCC 2 cut(s) 53, 101
SmiMI CAYNNNNRTG 1 cut(s) 393
SmlI CTYRAG 2 cut(s) 402, 413
SmoI CTYRAG 2 cut(s) 402, 413
Sse9I AATT 1 cut(s) 178
SsiI CCGC 4 cut(s) 22, 30, 57, 440
SstI GAGCTC 1 cut(s) 420
StyD4I CCNGG 1 cut(s) 369
TaaI ACNGT 4 cut(s) 118, 209, 361, 395
TaiI ACGT 2 cut(s) 21, 159
TaqI TCGA 6 cut(s) 39, 87, 159, 171, 278, 341
TasI AATT 1 cut(s) 178
TatI WGTACW 1 cut(s) 209
TauI GCSGC 1 cut(s) 442
TseFI GTSAC 1 cut(s) 386
Tsp45I GTSAC 1 cut(s) 386
TspDTI ATGAA 2 cut(s) 17, 87
TspGWI ACGGA 2 cut(s) 83, 245
VpaK11BI GGWCC 2 cut(s) 53, 101
XapI RAATTY 1 cut(s) 178
XmiI GTMKAC 2 cut(s) 159, 171
XmnI GAANNNNTTC 1 cut(s) 284
ZrmI AGTACT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.