Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000173

Orthogroup ID

OG0000483

Physical Location & Seq

Genomic Coordinates Forward (+)

396116 .. 396529

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_173G00435050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAAGGCAATTCGGAACGTTCGGGTTGGTGGATTTCTCGATCTCAACTTTAGACCCGCTTGTTTCTGCGATGAAGGTGGATCCATTGATCTAAACTTTGGTTCCACCGATCCTACGAGTGCCGATGGATCCGTCGATTTCAATTTTGGATCATGGGTCGGCCATAGTGTTGACCCATATTCCTCCTCACCTTTCAACACTAATACCCGTACTATTTCCTTTGGCACAACACGAGGACAACCTTTCATGGAACAACGAGGAGGAGATCAGCGGAGATCGAAACTCTTCTTCTCGTTCCCCGTGCACGGTGAGGACATCCTTGGTAATCCGAAGACTACTTATGAGGAAGCTAGCGCATACGATTACTATTCGGTGGCTCGGCAGTTACAACGGTGGCTCTCAAGTCTCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

137

Amino Acids

15.24

Weight (kDa)

5.59

Isoelectric Point (pI)

44.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii	Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa	Rorug04G0280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	57, 271
AclI	AACGTT	1 cut(s)	18
AclWI	GGATC	6 cut(s)	75, 88, 104, 123, 136, 157
AcoI	YGGCCR	1 cut(s)	160
AfaI	GTAC	1 cut(s)	211
AfiI	CCNNNNNNNGG	1 cut(s)	305
AgsI	TTSAA	2 cut(s)	142, 196
AluBI	AGCT	1 cut(s)	350
AluI	AGCT	1 cut(s)	350
Alw21I	GWGCWC	1 cut(s)	306
Alw26I	GTCTC	1 cut(s)	410
Alw44I	GTGCAC	1 cut(s)	302
AlwI	GGATC	6 cut(s)	75, 88, 104, 123, 136, 157
AoxI	GGCC	1 cut(s)	160
ApaLI	GTGCAC	1 cut(s)	302
Asp700I	GAANNNNTTC	1 cut(s)	284
AspLEI	GCGC	1 cut(s)	356
AsuHPI	GGTGA	2 cut(s)	180, 320
AsuNHI	GCTAGC	1 cut(s)	350
BaeGI	GKGCMC	1 cut(s)	306
BamHI	GGATCC	2 cut(s)	80, 128
BauI	CACGAG	1 cut(s)	231
BbsI	GAAGAC	1 cut(s)	338
Bbv12I	GWGCWC	1 cut(s)	306
BccI	CCATC	1 cut(s)	119
BcoDI	GTCTC	1 cut(s)	410
BfaI	CTAG	1 cut(s)	351
BmiI	GGNNCC	3 cut(s)	82, 103, 130
BmtI	GCTAGC	1 cut(s)	354
BpiI	GAAGAC	1 cut(s)	338
BpuEI	CTTGAG	1 cut(s)	385
BsaJI	CCNNGG	1 cut(s)	319
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
BseDI	CCNNGG	1 cut(s)	319
BseGI	GGATG	1 cut(s)	315
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseRI	GAGGAG	3 cut(s)	175, 273, 276
BseSI	GKGCMC	1 cut(s)	306
BshFI	GGCC	1 cut(s)	162
BsiHKAI	GWGCWC	1 cut(s)	306
BslI	CCNNNNNNNGG	1 cut(s)	305
BsmAI	GTCTC	1 cut(s)	410
BsnI	GGCC	1 cut(s)	162
Bsp1286I	GDGCHC	1 cut(s)	306
Bsp143I	GATC	8 cut(s)	40, 80, 88, 109, 128, 149, 265, 275
BspACI	CCGC	2 cut(s)	57, 271
BspANI	GGCC	1 cut(s)	162
BspLI	GGNNCC	3 cut(s)	82, 103, 130
BspOI	GCTAGC	1 cut(s)	354
BspPI	GGATC	6 cut(s)	75, 88, 104, 123, 136, 157
BssECI	CCNNGG	1 cut(s)	319
BssMI	GATC	8 cut(s)	40, 80, 88, 109, 128, 149, 265, 275
BssSI	CACGAG	1 cut(s)	231
BssT1I	CCWWGG	1 cut(s)	319
Bst2BI	CACGAG	1 cut(s)	231
Bst4CI	ACNGT	2 cut(s)	308, 393
Bst6I	CTCTTC	1 cut(s)	290
BstC8I	GCNNGC	1 cut(s)	352
BstF5I	GGATG	1 cut(s)	315
BstHHI	GCGC	1 cut(s)	356
BstKTI	GATC	8 cut(s)	43, 83, 91, 112, 131, 152, 268, 278
BstMAI	GTCTC	1 cut(s)	410
BstMBI	GATC	8 cut(s)	40, 80, 88, 109, 128, 149, 265, 275
BstSLI	GKGCMC	1 cut(s)	306
BstV2I	GAAGAC	1 cut(s)	338
BstX2I	RGATCY	2 cut(s)	80, 128
BstYI	RGATCY	2 cut(s)	80, 128
BsuRI	GGCC	1 cut(s)	162
BtgZI	GCGATG	1 cut(s)	84
BtsCI	GGATG	1 cut(s)	315
Cac8I	GCNNGC	1 cut(s)	352
CfoI	GCGC	1 cut(s)	356
Csp6I	GTAC	1 cut(s)	210
CviAII	CATG	2 cut(s)	153, 247
CviJI	RGCY	4 cut(s)	162, 350, 377, 397
CviKI_1	RGCY	4 cut(s)	162, 350, 377, 397
CviQI	GTAC	1 cut(s)	210
DpnI	GATC	8 cut(s)	42, 82, 90, 111, 130, 151, 267, 277
DpnII	GATC	8 cut(s)	40, 80, 88, 109, 128, 149, 265, 275
EaeI	YGGCCR	1 cut(s)	160
Eam1104I	CTCTTC	1 cut(s)	290
EarI	CTCTTC	1 cut(s)	290
Eco130I	CCWWGG	1 cut(s)	319
EcoT14I	CCWWGG	1 cut(s)	319
ErhI	CCWWGG	1 cut(s)	319
FaeI	CATG	2 cut(s)	156, 250
FaiI	YATR	6 cut(s)	154, 165, 178, 248, 342, 358
FalI	AAGNNNNNCTT	1 cut(s)	394
FatI	CATG	2 cut(s)	152, 246
FauI	CCCGC	1 cut(s)	64
FokI	GGATG	1 cut(s)	302
FspBI	CTAG	1 cut(s)	351
GlaI	GCGC	1 cut(s)	355
HaeIII	GGCC	1 cut(s)	162
HhaI	GCGC	1 cut(s)	356
Hin1II	CATG	2 cut(s)	156, 250
Hin6I	GCGC	1 cut(s)	354
HinP1I	GCGC	1 cut(s)	354
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HphI	GGTGA	2 cut(s)	180, 320
Hpy166II	GTNNAC	2 cut(s)	172, 304
Hpy188I	TCNGA	2 cut(s)	15, 330
Hpy188III	TCNNGA	2 cut(s)	38, 411
Hpy8I	GTNNAC	2 cut(s)	172, 304
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	1 cut(s)	68
HpyCH4III	ACNGT	2 cut(s)	308, 393
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	1 cut(s)	304
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	2 cut(s)	156, 250
HspAI	GCGC	1 cut(s)	354
Kzo9I	GATC	8 cut(s)	40, 80, 88, 109, 128, 149, 265, 275
MaeI	CTAG	1 cut(s)	351
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	384
MalI	GATC	8 cut(s)	42, 82, 90, 111, 130, 151, 267, 277
MboI	GATC	8 cut(s)	40, 80, 88, 109, 128, 149, 265, 275
MboII	GAAGA	3 cut(s)	277, 280, 343
MflI	RGATCY	2 cut(s)	80, 128
MhlI	GDGCHC	1 cut(s)	306
MluCI	AATT	2 cut(s)	9, 142
MnlI	CCTC	7 cut(s)	193, 196, 227, 251, 254, 304, 337
MroXI	GAANNNNTTC	1 cut(s)	284
MspA1I	CMGCKG	1 cut(s)	271
NdeII	GATC	8 cut(s)	40, 80, 88, 109, 128, 149, 265, 275
NheI	GCTAGC	1 cut(s)	350
NlaIII	CATG	2 cut(s)	156, 250
NlaIV	GGNNCC	3 cut(s)	82, 103, 130
NmeAIII	GCCGAG	1 cut(s)	358
PdmI	GAANNNNTTC	1 cut(s)	284
Psp1406I	AACGTT	1 cut(s)	18
PspN4I	GGNNCC	3 cut(s)	82, 103, 130
PsuI	RGATCY	2 cut(s)	80, 128
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
Sau3AI	GATC	8 cut(s)	40, 80, 88, 109, 128, 149, 265, 275
SduI	GDGCHC	1 cut(s)	306
SetI	ASST	5 cut(s)	21, 79, 193, 244, 352
SmlI	CTYRAG	1 cut(s)	400
SmoI	CTYRAG	1 cut(s)	400
Sse9I	AATT	2 cut(s)	9, 142
SsiI	CCGC	2 cut(s)	57, 271
SspMI	CTAG	1 cut(s)	351
StyI	CCWWGG	1 cut(s)	319
TaaI	ACNGT	2 cut(s)	308, 393
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	3 cut(s)	39, 135, 278
TasI	AATT	2 cut(s)	9, 142
TspDTI	ATGAA	3 cut(s)	17, 87, 235
TspGWI	ACGGA	1 cut(s)	121
VneI	GTGCAC	1 cut(s)	302
XmnI	GAANNNNTTC	1 cut(s)	284
XspI	CTAG	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.