Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000483

Physical Location & Seq

Genomic Coordinates Reverse (-)

45184931 .. 45185584

Gene Structure 654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00251240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGCTCGTCGGGCAGCCTAGTACCCGGTGGACTCCCACACCGCCTCAACTAAGAATCCTCAAGGGCCTATACTATGATAAGGGCTTTAAGCGTCCAACTCCCGAGCAGATTCAAGAGATGCGCCTCGGTCTGGCAAGTTCGGGCCGATCGAGGACAAAAACGTCTTCTTTTGGTTCGAACCTCAAATCCCGAGAGAGCCAACGGATGAAGGCATTTCGGAACGTTCGGGTTGGCGGATCTCTCGATCTCAACTTTGGACCCGCAAGTTCTACGGATGAAGGTGGATCCATCGATCCGAACTTTGGTCCCACTGTTCCTACAGGAGCCGATGGATCCATCTATCTAGCTTTTGGGTCAAACGTCGACCATCATGTTGACCCAAATACCACTTCACCCTTCAACAATAACAACAGTACTACCTCCTTCGGCACAACAGAGGTCAACCATCCATGGAACAACGAGGAGGAGATTAGCAGGAGATCGAAACTCTTCCTCTCGTTCCCCGTGCATAGAGAGGACTTCCTTGGTAACCCGATGACTACTTCGAGGAAGGTAGCACATACGCTTACTATCCCGGTGGCTCGGGCAGTCACAACGGTGGCTCTCAAGTCTCTCTTGAGCTCGGCCTCAACCCATCCGGAGCCGCCGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

217

Amino Acids

23.71

Weight (kDa)

9.84

Isoelectric Point (pI)

44.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii	Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa	Rorug04G0280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	160
AccI	GTMKAC	1 cut(s)	363
AccIII	TCCGGA	1 cut(s)	637
AciI	CCGC	4 cut(s)	41, 234, 261, 644
AclI	AACGTT	1 cut(s)	222
AclWI	GGATC	6 cut(s)	244, 279, 287, 292, 327, 340
AfaI	GTAC	2 cut(s)	22, 415
AfiI	CCNNNNNNNGG	2 cut(s)	130, 302
AgsI	TTSAA	2 cut(s)	113, 400
AjuI	GAANNNNNNNTTGG	2 cut(s)	373, 405
AleI	CACNNNNGTG	1 cut(s)	596
AloI	GAACNNNNNNTCC	2 cut(s)	170, 202
AluBI	AGCT	2 cut(s)	347, 621
AluI	AGCT	2 cut(s)	347, 621
Alw21I	GWGCWC	1 cut(s)	623
Alw26I	GTCTC	1 cut(s)	615
AlwI	GGATC	6 cut(s)	244, 279, 287, 292, 327, 340
Ama87I	CYCGRG	3 cut(s)	101, 189, 582
Aor13HI	TCCGGA	1 cut(s)	637
AoxI	GGCC	3 cut(s)	64, 142, 624
ApeKI	GCWGC	1 cut(s)	13
Asp700I	GAANNNNTTC	1 cut(s)	488
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	4 cut(s)	64, 142, 257, 305
AsuC2I	CCSGG	2 cut(s)	25, 575
AsuHPI	GGTGA	1 cut(s)	384
AsuII	TTCGAA	1 cut(s)	176
AvaI	CYCGRG	3 cut(s)	101, 189, 582
AvaII	GGWCC	2 cut(s)	257, 305
BamHI	GGATCC	2 cut(s)	284, 332
BanII	GRGCYC	1 cut(s)	623
BbsI	GAAGAC	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	623
BbvI	GCAGC	1 cut(s)	25
BccI	CCATC	6 cut(s)	296, 323, 344, 375, 453, 642
BcnI	CCSGG	2 cut(s)	25, 575
BcoDI	GTCTC	1 cut(s)	615
BfaI	CTAG	2 cut(s)	18, 344
BfmI	CTRYAG	1 cut(s)	318
BisI	GCNGC	2 cut(s)	14, 644
BlsI	GCNGC	2 cut(s)	15, 645
BmcAI	AGTACT	1 cut(s)	415
Bme1390I	CCNGG	2 cut(s)	25, 575
Bme18I	GGWCC	2 cut(s)	257, 305
BmeT110I	CYCGRG	3 cut(s)	101, 189, 582
BmgT120I	GGNCC	4 cut(s)	64, 142, 257, 305
BmiI	GGNNCC	6 cut(s)	259, 286, 307, 325, 334, 642
BmrFI	CCNGG	2 cut(s)	25, 575
BmsI	GCATC	1 cut(s)	108
BpiI	GAAGAC	1 cut(s)	156
Bpu14I	TTCGAA	1 cut(s)	176
BpuEI	CTTGAG	3 cut(s)	44, 590, 637
BpuMI	CCSGG	2 cut(s)	25, 575
Bsa29I	ATCGAT	1 cut(s)	291
BsaJI	CCNNGG	3 cut(s)	124, 449, 523
BsaWI	WCCGGW	1 cut(s)	637
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 302
BseAI	TCCGGA	1 cut(s)	637
BseCI	ATCGAT	1 cut(s)	291
BseDI	CCNNGG	3 cut(s)	124, 449, 523
BseGI	GGATG	4 cut(s)	210, 280, 445, 634
BseLI	CCNNNNNNNGG	2 cut(s)	130, 302
BseRI	GAGGAG	2 cut(s)	476, 479
BseXI	GCAGC	1 cut(s)	25
Bsh1285I	CGRYCG	1 cut(s)	149
BshFI	GGCC	3 cut(s)	66, 144, 626
BshVI	ATCGAT	1 cut(s)	291
BsiEI	CGRYCG	1 cut(s)	149
BsiHKAI	GWGCWC	1 cut(s)	623
BsiHKCI	CYCGRG	3 cut(s)	101, 189, 582
BsiSI	CCGG	3 cut(s)	25, 575, 638
BslFI	GGGAC	1 cut(s)	291
BslI	CCNNNNNNNGG	2 cut(s)	130, 302
BsmAI	GTCTC	1 cut(s)	615
BsmFI	GGGAC	1 cut(s)	291
BsnI	GGCC	3 cut(s)	66, 144, 626
BsoBI	CYCGRG	3 cut(s)	101, 189, 582
Bsp119I	TTCGAA	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	623
Bsp13I	TCCGGA	1 cut(s)	637
Bsp143I	GATC	7 cut(s)	146, 236, 244, 284, 292, 332, 479
Bsp19I	CCATGG	1 cut(s)	449
BspACI	CCGC	4 cut(s)	41, 234, 261, 644
BspANI	GGCC	3 cut(s)	66, 144, 626
BspDI	ATCGAT	1 cut(s)	291
BspEI	TCCGGA	1 cut(s)	637
BspLI	GGNNCC	6 cut(s)	259, 286, 307, 325, 334, 642
BspPI	GGATC	6 cut(s)	244, 279, 287, 292, 327, 340
BspT104I	TTCGAA	1 cut(s)	176
BssECI	CCNNGG	3 cut(s)	124, 449, 523
BssMI	GATC	7 cut(s)	146, 236, 244, 284, 292, 332, 479
BssT1I	CCWWGG	2 cut(s)	449, 523
Bst4CI	ACNGT	3 cut(s)	313, 413, 598
Bst6I	CTCTTC	1 cut(s)	494
BstBI	TTCGAA	1 cut(s)	176
BstDEI	CTNAG	1 cut(s)	50
BstDSI	CCRYGG	1 cut(s)	449
BstEII	GGTNACC	1 cut(s)	527
BstF5I	GGATG	4 cut(s)	210, 280, 445, 634
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	7 cut(s)	149, 239, 247, 287, 295, 335, 482
BstMAI	GTCTC	1 cut(s)	615
BstMBI	GATC	7 cut(s)	146, 236, 244, 284, 292, 332, 479
BstMCI	CGRYCG	1 cut(s)	149
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstPI	GGTNACC	1 cut(s)	527
BstSCI	CCNGG	2 cut(s)	23, 573
BstSFI	CTRYAG	1 cut(s)	318
BstV1I	GCAGC	1 cut(s)	25
BstV2I	GAAGAC	1 cut(s)	156
BstX2I	RGATCY	3 cut(s)	236, 284, 332
BstYI	RGATCY	3 cut(s)	236, 284, 332
Bsu15I	ATCGAT	1 cut(s)	291
BsuRI	GGCC	3 cut(s)	66, 144, 626
BsuTUI	ATCGAT	1 cut(s)	291
BtgI	CCRYGG	1 cut(s)	449
BtsCI	GGATG	4 cut(s)	210, 280, 445, 634
BtsIMutI	CAGTG	1 cut(s)	309
CfoI	GCGC	1 cut(s)	123
Cfr13I	GGNCC	4 cut(s)	64, 142, 257, 305
ClaI	ATCGAT	1 cut(s)	291
CseI	GACGC	1 cut(s)	80
Csp6I	GTAC	2 cut(s)	21, 414
CviAII	CATG	2 cut(s)	371, 450
CviQI	GTAC	2 cut(s)	21, 414
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	7 cut(s)	148, 238, 246, 286, 294, 334, 481
DpnII	GATC	7 cut(s)	146, 236, 244, 284, 292, 332, 479
DrdI	GACNNNNNNGTC	1 cut(s)	160
DseDI	GACNNNNNNGTC	1 cut(s)	160
Eam1104I	CTCTTC	1 cut(s)	494
EarI	CTCTTC	1 cut(s)	494
EciI	GGCGGA	1 cut(s)	249
Ecl136II	GAGCTC	1 cut(s)	621
Eco130I	CCWWGG	2 cut(s)	449, 523
Eco24I	GRGCYC	1 cut(s)	623
Eco47I	GGWCC	2 cut(s)	257, 305
Eco53kI	GAGCTC	1 cut(s)	621
Eco88I	CYCGRG	3 cut(s)	101, 189, 582
Eco91I	GGTNACC	1 cut(s)	527
EcoICRI	GAGCTC	1 cut(s)	621
EcoO109I	RGGNCCY	1 cut(s)	64
EcoO65I	GGTNACC	1 cut(s)	527
EcoT14I	CCWWGG	2 cut(s)	449, 523
EcoT38I	GRGCYC	1 cut(s)	623
ErhI	CCWWGG	2 cut(s)	449, 523
FaeI	CATG	2 cut(s)	374, 453
FaiI	YATR	6 cut(s)	70, 75, 372, 451, 510, 561
FalI	AAGNNNNNCTT	2 cut(s)	599, 631
FaqI	GGGAC	1 cut(s)	291
FatI	CATG	2 cut(s)	370, 449
FauI	CCCGC	1 cut(s)	268
FblI	GTMKAC	1 cut(s)	363
Fnu4HI	GCNGC	2 cut(s)	14, 644
FokI	GGATG	4 cut(s)	217, 287, 432, 621
FriOI	GRGCYC	1 cut(s)	623
Fsp4HI	GCNGC	2 cut(s)	14, 644
FspBI	CTAG	2 cut(s)	18, 344
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	2 cut(s)	14, 644
HaeIII	GGCC	3 cut(s)	66, 144, 626
HapII	CCGG	3 cut(s)	25, 575, 638
HgaI	GACGC	1 cut(s)	80
HhaI	GCGC	1 cut(s)	123
Hin1II	CATG	2 cut(s)	374, 453
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HincII	GTYRAC	3 cut(s)	364, 376, 442
HindII	GTYRAC	3 cut(s)	364, 376, 442
HinfI	GANTC	3 cut(s)	31, 54, 109
HpaII	CCGG	3 cut(s)	25, 575, 638
HphI	GGTGA	1 cut(s)	384
Hpy166II	GTNNAC	4 cut(s)	30, 364, 376, 442
Hpy188I	TCNGA	2 cut(s)	219, 297
Hpy188III	TCNNGA	6 cut(s)	101, 113, 189, 242, 616, 638
Hpy8I	GTNNAC	4 cut(s)	30, 364, 376, 442
Hpy99I	CGWCG	2 cut(s)	11, 365
HpyAV	CCTTC	5 cut(s)	202, 272, 406, 433, 544
HpyCH4III	ACNGT	3 cut(s)	313, 413, 598
HpyCH4IV	ACGT	3 cut(s)	161, 222, 360
HpyCH4V	TGCA	1 cut(s)	508
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	1 cut(s)	50
HpySE526I	ACGT	3 cut(s)	161, 222, 360
Hsp92II	CATG	2 cut(s)	374, 453
HspAI	GCGC	1 cut(s)	121
Kpn2I	TCCGGA	1 cut(s)	637
Kzo9I	GATC	7 cut(s)	146, 236, 244, 284, 292, 332, 479
LmnI	GCTCC	2 cut(s)	323, 640
LpnPI	CCDG	5 cut(s)	38, 116, 306, 460, 588
Lsp1109I	GCAGC	1 cut(s)	25
LweI	GCATC	1 cut(s)	108
MaeI	CTAG	2 cut(s)	18, 344
MaeII	ACGT	3 cut(s)	161, 222, 360
MaeIII	GTNAC	2 cut(s)	527, 589
MalI	GATC	7 cut(s)	148, 238, 246, 286, 294, 334, 481
MboI	GATC	7 cut(s)	146, 236, 244, 284, 292, 332, 479
MboII	GAAGA	2 cut(s)	156, 481
MflI	RGATCY	3 cut(s)	236, 284, 332
MhlI	GDGCHC	1 cut(s)	623
MlyI	GAGTC	1 cut(s)	25
MmeI	TCCRAC	1 cut(s)	119
MroI	TCCGGA	1 cut(s)	637
MroXI	GAANNNNTTC	1 cut(s)	488
MseI	TTAA	1 cut(s)	87
MslI	CAYNNNNRTG	1 cut(s)	596
MspI	CCGG	3 cut(s)	25, 575, 638
MspR9I	CCNGG	2 cut(s)	25, 575
MwoI	GCNNNNNNNGC	1 cut(s)	10
NciI	CCSGG	2 cut(s)	25, 575
NcoI	CCATGG	1 cut(s)	449
NdeII	GATC	7 cut(s)	146, 236, 244, 284, 292, 332, 479
NlaIII	CATG	2 cut(s)	374, 453
NlaIV	GGNNCC	6 cut(s)	259, 286, 307, 325, 334, 642
NmeAIII	GCCGAG	1 cut(s)	602
NmuCI	GTSAC	1 cut(s)	589
NspV	TTCGAA	1 cut(s)	176
OliI	CACNNNNGTG	1 cut(s)	596
PcsI	WCGNNNNNNNCGW	1 cut(s)	146
PdmI	GAANNNNTTC	1 cut(s)	488
PfeI	GAWTC	2 cut(s)	54, 109
PkrI	GCNGC	2 cut(s)	15, 645
Ple19I	CGATCG	1 cut(s)	149
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
Psp124BI	GAGCTC	1 cut(s)	623
Psp1406I	AACGTT	1 cut(s)	222
PspEI	GGTNACC	1 cut(s)	527
PspN4I	GGNNCC	6 cut(s)	259, 286, 307, 325, 334, 642
PspPI	GGNCC	4 cut(s)	64, 142, 257, 305
PsuI	RGATCY	3 cut(s)	236, 284, 332
PvuI	CGATCG	1 cut(s)	149
RsaI	GTAC	2 cut(s)	22, 415
RsaNI	GTAC	2 cut(s)	21, 414
RseI	CAYNNNNRTG	1 cut(s)	596
SacI	GAGCTC	1 cut(s)	623
SalI	GTCGAC	1 cut(s)	362
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	2 cut(s)	14, 644
Sau3AI	GATC	7 cut(s)	146, 236, 244, 284, 292, 332, 479
Sau96I	GGNCC	4 cut(s)	64, 142, 257, 305
ScaI	AGTACT	1 cut(s)	415
SchI	GAGTC	1 cut(s)	25
ScrFI	CCNGG	2 cut(s)	25, 575
SduI	GDGCHC	1 cut(s)	623
SfaNI	GCATC	1 cut(s)	108
SfcI	CTRYAG	1 cut(s)	318
SfuI	TTCGAA	1 cut(s)	176
SinI	GGWCC	2 cut(s)	257, 305
SmiMI	CAYNNNNRTG	1 cut(s)	596
SmlI	CTYRAG	3 cut(s)	59, 605, 616
SmoI	CTYRAG	3 cut(s)	59, 605, 616
SsiI	CCGC	4 cut(s)	41, 234, 261, 644
SspMI	CTAG	2 cut(s)	18, 344
SstI	GAGCTC	1 cut(s)	623
StyD4I	CCNGG	2 cut(s)	23, 573
StyI	CCWWGG	2 cut(s)	449, 523
TaaI	ACNGT	3 cut(s)	313, 413, 598
TaiI	ACGT	3 cut(s)	164, 225, 363
TaqI	TCGA	7 cut(s)	149, 176, 243, 291, 363, 482, 545
TaqII	GACCGA	1 cut(s)	116
TatI	WGTACW	1 cut(s)	413
TauI	GCSGC	1 cut(s)	646
TfiI	GAWTC	2 cut(s)	54, 109
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TscAI	CASTG	1 cut(s)	316
TseFI	GTSAC	1 cut(s)	589
TseI	GCWGC	1 cut(s)	13
Tsp45I	GTSAC	1 cut(s)	589
TspDTI	ATGAA	2 cut(s)	221, 291
TspGWI	ACGGA	2 cut(s)	217, 287
TspRI	CASTG	1 cut(s)	316
VpaK11BI	GGWCC	2 cut(s)	257, 305
XmiI	GTMKAC	1 cut(s)	363
XmnI	GAANNNNTTC	1 cut(s)	488
XspI	CTAG	2 cut(s)	18, 344
ZrmI	AGTACT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.