Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000483

Physical Location & Seq

Genomic Coordinates Reverse (-)

51415205 .. 51417519

Gene Structure 2315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00321790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGAACCACGAACTCGCAACTATTGGAGCTTCAAACCCAAAGAACAAATGGAATTACAAGCCCAAGAACCAGCCGAGGAGGGAGGAAGCAACCAAGCAGCCGGAAGTACGTCCAACTCCGAGCAGATTCAAGAGATCCGCCTCGTCCGCGTTTGGGCGGATCGAGGACAAGAACGTCTTCTTTTGGTTCCGAACCTCAAATCTCGAGAAAGCCAGCAGATGAAGGCAATTCGGAACGTTCGGGTTAGTGGATCTCTCGATCTCAACTTTGGACCCGCTTGTTCTATCGATGACGGTGGATCCATTGATCTAAACTTTGGTTCCACCGATCCTACAGTGCCGATGGATCCGTCGATTTCAATTTTGGATTATGGGTCAGCCATAGTGTTGACCCATATTCCTCCTCACCTTTCAACACTAATACCCGTACTATTTCCTTTGGCACAACGGAGGACAACCTTTCATGGAACAACGAGGAGGAGATCAGCGGAGATCGAAACTCTTCCTCTCGTTCCCCGTGCACGACCAAGGGAAAAGAGGAAGTTCATAACTGAACTTCAAAATGATCAAAATATTGTTGCCATGGTTGGTGATGGAATCCCCGATGCTGCAGCCTTAGCTTCATCCCATGTTGGGATTGCCATGGGTGGTGGTGTTGGAACCGCTAGTGAGAACTCCTCTATTGTTCTATTGGGCAATAGACTTTCACAACTGGTAGATGCTTTGGAGTTGAGCAGGCTAACTATGGAGACTGTGAAGCAAAATCTTGGTGGAGATGAAGAACATGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005375 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0008150 GO:0008152 GO:0008324 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009767 GO:0009941 GO:0009987 GO:0015075 GO:0015318 GO:0015979 GO:0016530 GO:0016531 GO:0019684 GO:0022857 GO:0022890 GO:0022900 GO:0030001 GO:0031967 GO:0031975 GO:0034220 GO:0035434 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046873 GO:0046914 GO:0046915 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0055085 GO:0055114 GO:0065007 GO:0065008 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0140104

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

263

Amino Acids

28.7

Weight (kDa)

5.62

Isoelectric Point (pI)

47.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii	Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa	Rorug04G0280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	174
AccII	CGCG	1 cut(s)	150
AciI	CCGC	6 cut(s)	139, 148, 158, 276, 488, 663
AclI	AACGTT	1 cut(s)	237
AclWI	GGATC	8 cut(s)	130, 168, 259, 294, 307, 323, 341, 354
AfaI	GTAC	2 cut(s)	109, 429
AfiI	CCNNNNNNNGG	2 cut(s)	154, 633
AflIII	ACRYGT	1 cut(s)	784
AgsI	TTSAA	5 cut(s)	34, 131, 360, 414, 560
AluBI	AGCT	2 cut(s)	30, 620
AluI	AGCT	2 cut(s)	30, 620
Alw21I	GWGCWC	1 cut(s)	523
Alw26I	GTCTC	1 cut(s)	743
Alw44I	GTGCAC	1 cut(s)	519
AlwI	GGATC	8 cut(s)	130, 168, 259, 294, 307, 323, 341, 354
Ama87I	CYCGRG	1 cut(s)	204
ApaLI	GTGCAC	1 cut(s)	519
ApeKI	GCWGC	3 cut(s)	98, 608, 611
Asp700I	GAANNNNTTC	2 cut(s)	177, 501
AspS9I	GGNCC	1 cut(s)	272
AsuHPI	GGTGA	2 cut(s)	398, 602
AvaI	CYCGRG	1 cut(s)	204
AvaII	GGWCC	1 cut(s)	272
BaeGI	GKGCMC	1 cut(s)	523
BamHI	GGATCC	2 cut(s)	299, 346
BbsI	GAAGAC	1 cut(s)	170
Bbv12I	GWGCWC	1 cut(s)	523
BbvI	GCAGC	3 cut(s)	110, 595, 623
BccI	CCATC	2 cut(s)	337, 587
BclI	TGATCA	1 cut(s)	565
BcoDI	GTCTC	1 cut(s)	743
BfaI	CTAG	2 cut(s)	666, 790
BfmI	CTRYAG	2 cut(s)	333, 609
BisI	GCNGC	3 cut(s)	99, 609, 612
BlsI	GCNGC	3 cut(s)	100, 610, 613
Bme18I	GGWCC	1 cut(s)	272
BmeT110I	CYCGRG	1 cut(s)	204
BmgT120I	GGNCC	1 cut(s)	272
BmiI	GGNNCC	7 cut(s)	6, 189, 274, 301, 322, 348, 661
BmsI	GCATC	2 cut(s)	595, 709
BpiI	GAAGAC	1 cut(s)	170
BplI	GAGNNNNNCTC	2 cut(s)	662, 694
Bpu10I	CCTNAGC	1 cut(s)	616
Bsa29I	ATCGAT	1 cut(s)	288
BsaJI	CCNNGG	4 cut(s)	75, 527, 582, 642
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 633
Bse1I	ACTGG	1 cut(s)	717
BseCI	ATCGAT	1 cut(s)	288
BseDI	CCNNGG	4 cut(s)	75, 527, 582, 642
BseGI	GGATG	1 cut(s)	623
BseLI	CCNNNNNNNGG	2 cut(s)	154, 633
BseNI	ACTGG	1 cut(s)	717
BseRI	GAGGAG	5 cut(s)	92, 393, 490, 493, 667
BseSI	GKGCMC	1 cut(s)	523
BseXI	GCAGC	3 cut(s)	110, 595, 623
Bsh1236I	CGCG	1 cut(s)	150
BshVI	ATCGAT	1 cut(s)	288
BsiHKAI	GWGCWC	1 cut(s)	523
BsiHKCI	CYCGRG	1 cut(s)	204
BsiSI	CCGG	1 cut(s)	102
BslI	CCNNNNNNNGG	2 cut(s)	154, 633
BsmAI	GTCTC	1 cut(s)	743
BsoBI	CYCGRG	1 cut(s)	204
Bsp1286I	GDGCHC	1 cut(s)	523
Bsp19I	CCATGG	2 cut(s)	582, 642
BspACI	CCGC	6 cut(s)	139, 148, 158, 276, 488, 663
BspDI	ATCGAT	1 cut(s)	288
BspFNI	CGCG	1 cut(s)	150
BspLI	GGNNCC	7 cut(s)	6, 189, 274, 301, 322, 348, 661
BspMAI	CTGCAG	1 cut(s)	613
BspPI	GGATC	8 cut(s)	130, 168, 259, 294, 307, 323, 341, 354
BsrI	ACTGG	1 cut(s)	717
BssECI	CCNNGG	4 cut(s)	75, 527, 582, 642
BssT1I	CCWWGG	3 cut(s)	527, 582, 642
Bst4CI	ACNGT	3 cut(s)	296, 337, 754
Bst6I	CTCTTC	1 cut(s)	507
BstC8I	GCNNGC	2 cut(s)	215, 737
BstDEI	CTNAG	1 cut(s)	616
BstDSI	CCRYGG	2 cut(s)	582, 642
BstF5I	GGATG	1 cut(s)	623
BstFNI	CGCG	1 cut(s)	150
BstMAI	GTCTC	1 cut(s)	743
BstMWI	GCNNNNNNNGC	2 cut(s)	147, 617
BstNSI	RCATGY	1 cut(s)	788
BstSFI	CTRYAG	2 cut(s)	333, 609
BstSLI	GKGCMC	1 cut(s)	523
BstUI	CGCG	1 cut(s)	150
BstV1I	GCAGC	3 cut(s)	110, 595, 623
BstV2I	GAAGAC	1 cut(s)	170
BstX2I	RGATCY	4 cut(s)	135, 251, 299, 346
BstYI	RGATCY	4 cut(s)	135, 251, 299, 346
Bsu15I	ATCGAT	1 cut(s)	288
BsuTUI	ATCGAT	1 cut(s)	288
BtgI	CCRYGG	2 cut(s)	582, 642
BtsCI	GGATG	1 cut(s)	623
BtsIMutI	CAGTG	1 cut(s)	342
Cac8I	GCNNGC	2 cut(s)	215, 737
Cfr13I	GGNCC	1 cut(s)	272
ClaI	ATCGAT	1 cut(s)	288
Csp6I	GTAC	2 cut(s)	108, 428
CviAII	CATG	5 cut(s)	464, 583, 629, 643, 785
CviJI	RGCY	9 cut(s)	30, 62, 74, 101, 213, 380, 614, 620, 739
CviKI_1	RGCY	9 cut(s)	30, 62, 74, 101, 213, 380, 614, 620, 739
CviQI	GTAC	2 cut(s)	108, 428
DdeI	CTNAG	1 cut(s)	616
DrdI	GACNNNNNNGTC	1 cut(s)	174
DseDI	GACNNNNNNGTC	1 cut(s)	174
Eam1104I	CTCTTC	1 cut(s)	507
EarI	CTCTTC	1 cut(s)	507
EciI	GGCGGA	2 cut(s)	128, 173
Eco130I	CCWWGG	3 cut(s)	527, 582, 642
Eco47I	GGWCC	1 cut(s)	272
Eco88I	CYCGRG	1 cut(s)	204
EcoT14I	CCWWGG	3 cut(s)	527, 582, 642
ErhI	CCWWGG	3 cut(s)	527, 582, 642
FaeI	CATG	5 cut(s)	467, 586, 632, 646, 788
FalI	AAGNNNNNCTT	2 cut(s)	162, 194
FatI	CATG	5 cut(s)	463, 582, 628, 642, 784
FauI	CCCGC	1 cut(s)	283
FbaI	TGATCA	1 cut(s)	565
Fnu4HI	GCNGC	3 cut(s)	99, 609, 612
FokI	GGATG	1 cut(s)	610
Fsp4HI	GCNGC	3 cut(s)	99, 609, 612
FspBI	CTAG	2 cut(s)	666, 790
GluI	GCNGC	3 cut(s)	99, 609, 612
HapII	CCGG	1 cut(s)	102
Hin1II	CATG	5 cut(s)	467, 586, 632, 646, 788
HincII	GTYRAC	1 cut(s)	390
HindII	GTYRAC	1 cut(s)	390
HinfI	GANTC	2 cut(s)	127, 597
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	2 cut(s)	398, 602
Hpy166II	GTNNAC	2 cut(s)	390, 521
Hpy188I	TCNGA	3 cut(s)	121, 192, 234
Hpy188III	TCNNGA	4 cut(s)	131, 204, 206, 257
Hpy8I	GTNNAC	2 cut(s)	390, 521
Hpy99I	CGWCG	1 cut(s)	355
HpyAV	CCTTC	1 cut(s)	217
HpyCH4III	ACNGT	3 cut(s)	296, 337, 754
HpyCH4IV	ACGT	3 cut(s)	110, 175, 237
HpyCH4V	TGCA	2 cut(s)	521, 611
HpyF10VI	GCNNNNNNNGC	2 cut(s)	147, 617
HpyF3I	CTNAG	1 cut(s)	616
HpySE526I	ACGT	3 cut(s)	110, 175, 237
Hsp92II	CATG	5 cut(s)	467, 586, 632, 646, 788
Ksp22I	TGATCA	1 cut(s)	565
LmnI	GCTCC	1 cut(s)	27
LpnPI	CCDG	5 cut(s)	84, 115, 227, 698, 721
Lsp1109I	GCAGC	3 cut(s)	110, 595, 623
LweI	GCATC	2 cut(s)	595, 709
MaeI	CTAG	2 cut(s)	666, 790
MaeII	ACGT	3 cut(s)	110, 175, 237
MboII	GAAGA	3 cut(s)	170, 494, 791
MflI	RGATCY	4 cut(s)	135, 251, 299, 346
MhlI	GDGCHC	1 cut(s)	523
MluCI	AATT	3 cut(s)	53, 228, 360
MmeI	TCCRAC	2 cut(s)	138, 637
MroXI	GAANNNNTTC	2 cut(s)	177, 501
MspA1I	CMGCKG	1 cut(s)	488
MspI	CCGG	1 cut(s)	102
MvnI	CGCG	1 cut(s)	150
MwoI	GCNNNNNNNGC	2 cut(s)	147, 617
NcoI	CCATGG	2 cut(s)	582, 642
NlaIII	CATG	5 cut(s)	467, 586, 632, 646, 788
NlaIV	GGNNCC	7 cut(s)	6, 189, 274, 301, 322, 348, 661
NmeAIII	GCCGAG	1 cut(s)	100
NspI	RCATGY	1 cut(s)	788
PaeR7I	CTCGAG	1 cut(s)	204
PciI	ACATGT	1 cut(s)	784
PdmI	GAANNNNTTC	2 cut(s)	177, 501
PfeI	GAWTC	2 cut(s)	127, 597
PkrI	GCNGC	3 cut(s)	100, 610, 613
PscI	ACATGT	1 cut(s)	784
Psp1406I	AACGTT	1 cut(s)	237
PspN4I	GGNNCC	7 cut(s)	6, 189, 274, 301, 322, 348, 661
PspPI	GGNCC	1 cut(s)	272
PstI	CTGCAG	1 cut(s)	613
PsuI	RGATCY	4 cut(s)	135, 251, 299, 346
RsaI	GTAC	2 cut(s)	109, 429
RsaNI	GTAC	2 cut(s)	108, 428
SatI	GCNGC	3 cut(s)	99, 609, 612
Sau96I	GGNCC	1 cut(s)	272
SduI	GDGCHC	1 cut(s)	523
SetI	ASST	8 cut(s)	32, 113, 178, 198, 240, 411, 461, 622
SfaNI	GCATC	2 cut(s)	595, 709
SfcI	CTRYAG	2 cut(s)	333, 609
Sfr274I	CTCGAG	1 cut(s)	204
SinI	GGWCC	1 cut(s)	272
SlaI	CTCGAG	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	204
SmoI	CTYRAG	1 cut(s)	204
Sse9I	AATT	3 cut(s)	53, 228, 360
SsiI	CCGC	6 cut(s)	139, 148, 158, 276, 488, 663
SspI	AATATT	1 cut(s)	574
SspMI	CTAG	2 cut(s)	666, 790
StyI	CCWWGG	3 cut(s)	527, 582, 642
TaaI	ACNGT	3 cut(s)	296, 337, 754
TaiI	ACGT	3 cut(s)	113, 178, 240
TaqI	TCGA	6 cut(s)	163, 205, 258, 288, 353, 495
TasI	AATT	3 cut(s)	53, 228, 360
TfiI	GAWTC	2 cut(s)	127, 597
TscAI	CASTG	1 cut(s)	342
TseI	GCWGC	3 cut(s)	98, 608, 611
TspDTI	ATGAA	5 cut(s)	236, 452, 535, 612, 792
TspGWI	ACGGA	2 cut(s)	339, 463
TspRI	CASTG	1 cut(s)	342
VneI	GTGCAC	1 cut(s)	519
VpaK11BI	GGWCC	1 cut(s)	272
XceI	RCATGY	1 cut(s)	788
XcmI	CCANNNNNNNNNTGG	1 cut(s)	46
XhoI	CTCGAG	1 cut(s)	204
XmnI	GAANNNNTTC	2 cut(s)	177, 501
XspI	CTAG	2 cut(s)	666, 790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.