Rroxscaffold_7G00201010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000483
Physical Location & Seq
Reverse (-)
48492176 .. 48494390
2215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00201010.1

Sequence Viewer

Length: 450 bp
ATGAAGGCAATTCGGAACATTCGAGTTGGTGGATCTCTCGATCTCAATTTTGGATCCACTAGTTCTACCGATGATGGTGGATCCATCGATCTAAACTTTGGTTCCACCGCTTCTACCGGTGCCGATGGATCCGTCGATTTCAATTTTGGATCATGGGCCCGCAACCACGGCGTCACCATCCTCACCGTGGGCCACGCTCCGTCCACACGGACGGCTCCTCCGGTTTTCGCTCTGGTTTCGCGAGTGGGCCGAGGTCCACCGCGTCTTCTTCCTCGGCAATGCAGCCGGACTGCGGTGGGTTATGCTAAGGCTGTGTATTTACTTGCGATTGAGGGGCTTTGCAAGAGTCGGATTTTGACCGTGCATGGTTTGGCGGTGGGTATCGTTGGGGAGAAGCTGGAGTATGGCGGGGATGGAGATTGTTGTGGAGAACAATTTGGGATTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

15.47

Weight (kDa)

8.44

Isoelectric Point (pI)

20.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000483)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa Rorug04G0280300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 119
AccII CGCG 2 cut(s) 241, 262
AciI CCGC 6 cut(s) 108, 160, 260, 293, 374, 408
AclWI GGATC 8 cut(s) 40, 48, 61, 75, 88, 123, 136, 157
AcyI GRCGYC 1 cut(s) 171
AfiI CCNNNNNNNGG 2 cut(s) 187, 292
AgeI ACCGGT 1 cut(s) 116
AgsI TTSAA 1 cut(s) 142
AhlI ACTAGT 1 cut(s) 59
AluBI AGCT 1 cut(s) 397
AluI AGCT 1 cut(s) 397
AlwI GGATC 8 cut(s) 40, 48, 61, 75, 88, 123, 136, 157
AoxI GGCC 3 cut(s) 156, 190, 247
ApaI GGGCCC 1 cut(s) 160
ApeKI GCWGC 1 cut(s) 282
AsiGI ACCGGT 1 cut(s) 116
AspS9I GGNCC 5 cut(s) 156, 157, 190, 247, 254
AsuHPI GGTGA 2 cut(s) 166, 175
AvaII GGWCC 1 cut(s) 254
BaeGI GKGCMC 1 cut(s) 160
BamHI GGATCC 3 cut(s) 53, 80, 128
BanI GGYRCC 1 cut(s) 119
BanII GRGCYC 1 cut(s) 160
BbsI GAAGAC 1 cut(s) 257
BbvI GCAGC 1 cut(s) 294
BccI CCATC 5 cut(s) 68, 92, 119, 185, 407
BceAI ACGGC 2 cut(s) 184, 228
BcuI ACTAGT 1 cut(s) 59
BfaI CTAG 1 cut(s) 60
BisI GCNGC 1 cut(s) 283
BlsI GCNGC 1 cut(s) 284
Bme18I GGWCC 1 cut(s) 254
BmgT120I GGNCC 5 cut(s) 156, 157, 190, 247, 254
BmiI GGNNCC 7 cut(s) 55, 82, 103, 121, 130, 158, 216
BpiI GAAGAC 1 cut(s) 257
BpmI CTGGAG 1 cut(s) 419
Bpu10I CCTNAGC 1 cut(s) 306
Bsa29I ATCGAT 1 cut(s) 87
BsaHI GRCGYC 1 cut(s) 171
BsaJI CCNNGG 4 cut(s) 166, 186, 250, 272
BsaWI WCCGGW 2 cut(s) 116, 220
BsaXI ACNNNNNCTCC 2 cut(s) 202, 232
Bsc4I CCNNNNNNNGG 2 cut(s) 187, 292
Bse118I RCCGGY 1 cut(s) 116
Bse3DI GCAATG 1 cut(s) 284
BseCI ATCGAT 1 cut(s) 87
BseDI CCNNGG 4 cut(s) 166, 186, 250, 272
BseGI GGATG 2 cut(s) 177, 418
BseLI CCNNNNNNNGG 2 cut(s) 187, 292
BseMI GCAATG 1 cut(s) 284
BseRI GAGGAG 1 cut(s) 207
BseSI GKGCMC 1 cut(s) 160
BseXI GCAGC 1 cut(s) 294
Bsh1236I CGCG 2 cut(s) 241, 262
BshFI GGCC 3 cut(s) 158, 192, 249
BshNI GGYRCC 1 cut(s) 119
BshTI ACCGGT 1 cut(s) 116
BshVI ATCGAT 1 cut(s) 87
BsiSI CCGG 3 cut(s) 117, 221, 286
BslI CCNNNNNNNGG 2 cut(s) 187, 292
BsnI GGCC 3 cut(s) 158, 192, 249
Bsp120I GGGCCC 1 cut(s) 156
Bsp1286I GDGCHC 1 cut(s) 160
Bsp143I GATC 7 cut(s) 32, 40, 53, 80, 88, 128, 149
Bsp68I TCGCGA 1 cut(s) 241
BspACI CCGC 6 cut(s) 108, 160, 260, 293, 374, 408
BspANI GGCC 3 cut(s) 158, 192, 249
BspDI ATCGAT 1 cut(s) 87
BspFNI CGCG 2 cut(s) 241, 262
BspLI GGNNCC 7 cut(s) 55, 82, 103, 121, 130, 158, 216
BspPI GGATC 8 cut(s) 40, 48, 61, 75, 88, 123, 136, 157
BspT107I GGYRCC 1 cut(s) 119
BsrDI GCAATG 1 cut(s) 284
BsrFI RCCGGY 1 cut(s) 116
BssAI RCCGGY 1 cut(s) 116
BssECI CCNNGG 4 cut(s) 166, 186, 250, 272
BssMI GATC 7 cut(s) 32, 40, 53, 80, 88, 128, 149
BssNI GRCGYC 1 cut(s) 171
Bst4CI ACNGT 2 cut(s) 187, 361
BstACI GRCGYC 1 cut(s) 171
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 1 cut(s) 306
BstDSI CCRYGG 2 cut(s) 166, 186
BstF5I GGATG 2 cut(s) 177, 418
BstFNI CGCG 2 cut(s) 241, 262
BstKTI GATC 7 cut(s) 35, 43, 56, 83, 91, 131, 152
BstMBI GATC 7 cut(s) 32, 40, 53, 80, 88, 128, 149
BstMWI GCNNNNNNNGC 1 cut(s) 168
BstSLI GKGCMC 1 cut(s) 160
BstUI CGCG 2 cut(s) 241, 262
BstV1I GCAGC 1 cut(s) 294
BstV2I GAAGAC 1 cut(s) 257
BstX2I RGATCY 4 cut(s) 32, 53, 80, 128
BstYI RGATCY 4 cut(s) 32, 53, 80, 128
Bsu15I ATCGAT 1 cut(s) 87
BsuRI GGCC 3 cut(s) 158, 192, 249
BsuTUI ATCGAT 1 cut(s) 87
BtgI CCRYGG 2 cut(s) 166, 186
BtsCI GGATG 2 cut(s) 177, 418
BtuMI TCGCGA 1 cut(s) 241
Cac8I GCNNGC 1 cut(s) 160
Cfr10I RCCGGY 1 cut(s) 116
Cfr13I GGNCC 5 cut(s) 156, 157, 190, 247, 254
ClaI ATCGAT 1 cut(s) 87
CseI GACGC 2 cut(s) 160, 251
CspAI ACCGGT 1 cut(s) 116
CviAII CATG 2 cut(s) 153, 365
CviJI RGCY 8 cut(s) 158, 192, 215, 249, 285, 311, 337, 397
CviKI_1 RGCY 8 cut(s) 158, 192, 215, 249, 285, 311, 337, 397
DdeI CTNAG 1 cut(s) 306
DpnI GATC 7 cut(s) 34, 42, 55, 82, 90, 130, 151
DpnII GATC 7 cut(s) 32, 40, 53, 80, 88, 128, 149
Eco24I GRGCYC 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 254
EcoT38I GRGCYC 1 cut(s) 160
FaeI CATG 2 cut(s) 156, 368
FaiI YATR 4 cut(s) 154, 303, 366, 405
FatI CATG 2 cut(s) 152, 364
FauI CCCGC 2 cut(s) 167, 401
Fnu4HI GCNGC 1 cut(s) 283
FokI GGATG 2 cut(s) 164, 425
FriOI GRGCYC 1 cut(s) 160
Fsp4HI GCNGC 1 cut(s) 283
FspBI CTAG 1 cut(s) 60
GluI GCNGC 1 cut(s) 283
GsuI CTGGAG 1 cut(s) 419
HaeIII GGCC 3 cut(s) 158, 192, 249
HapII CCGG 3 cut(s) 117, 221, 286
HgaI GACGC 2 cut(s) 160, 251
Hin1I GRCGYC 1 cut(s) 171
Hin1II CATG 2 cut(s) 156, 368
HinfI GANTC 1 cut(s) 346
HpaII CCGG 3 cut(s) 117, 221, 286
HphI GGTGA 2 cut(s) 166, 175
Hpy166II GTNNAC 2 cut(s) 204, 257
Hpy188I TCNGA 2 cut(s) 15, 351
Hpy188III TCNNGA 2 cut(s) 38, 240
Hpy8I GTNNAC 2 cut(s) 204, 257
Hpy99I CGWCG 1 cut(s) 137
HpyCH4III ACNGT 2 cut(s) 187, 361
HpyCH4V TGCA 3 cut(s) 282, 342, 364
HpyF10VI GCNNNNNNNGC 1 cut(s) 168
HpyF3I CTNAG 1 cut(s) 306
Hsp92I GRCGYC 1 cut(s) 171
Hsp92II CATG 2 cut(s) 156, 368
Kzo9I GATC 7 cut(s) 32, 40, 53, 80, 88, 128, 149
LmnI GCTCC 2 cut(s) 202, 220
LpnPI CCDG 5 cut(s) 130, 218, 234, 299, 383
Lsp1109I GCAGC 1 cut(s) 294
MaeI CTAG 1 cut(s) 60
MaeIII GTNAC 1 cut(s) 172
MalI GATC 7 cut(s) 34, 42, 55, 82, 90, 130, 151
MboI GATC 7 cut(s) 32, 40, 53, 80, 88, 128, 149
MboII GAAGA 2 cut(s) 257, 260
MflI RGATCY 4 cut(s) 32, 53, 80, 128
MhlI GDGCHC 1 cut(s) 160
MluCI AATT 4 cut(s) 9, 46, 142, 434
MlyI GAGTC 1 cut(s) 355
MmeI TCCRAC 1 cut(s) 329
MnlI CCTC 5 cut(s) 191, 228, 245, 282, 325
MspI CCGG 3 cut(s) 117, 221, 286
MvnI CGCG 2 cut(s) 241, 262
MwoI GCNNNNNNNGC 1 cut(s) 168
NdeII GATC 7 cut(s) 32, 40, 53, 80, 88, 128, 149
NlaIII CATG 2 cut(s) 156, 368
NlaIV GGNNCC 7 cut(s) 55, 82, 103, 121, 130, 158, 216
NmeAIII GCCGAG 2 cut(s) 253, 275
NmuCI GTSAC 1 cut(s) 172
NruI TCGCGA 1 cut(s) 241
PcsI WCGNNNNNNNCGW 1 cut(s) 19
PinAI ACCGGT 1 cut(s) 116
PkrI GCNGC 1 cut(s) 284
PleI GAGTC 1 cut(s) 354
PpsI GAGTC 1 cut(s) 354
PspN4I GGNNCC 7 cut(s) 55, 82, 103, 121, 130, 158, 216
PspOMI GGGCCC 1 cut(s) 156
PspPI GGNCC 5 cut(s) 156, 157, 190, 247, 254
PsuI RGATCY 4 cut(s) 32, 53, 80, 128
RruI TCGCGA 1 cut(s) 241
SatI GCNGC 1 cut(s) 283
Sau3AI GATC 7 cut(s) 32, 40, 53, 80, 88, 128, 149
Sau96I GGNCC 5 cut(s) 156, 157, 190, 247, 254
SchI GAGTC 1 cut(s) 355
SduI GDGCHC 1 cut(s) 160
SetI ASST 2 cut(s) 256, 399
SinI GGWCC 1 cut(s) 254
SpeI ACTAGT 1 cut(s) 59
Sse9I AATT 4 cut(s) 9, 46, 142, 434
SsiI CCGC 6 cut(s) 108, 160, 260, 293, 374, 408
SspMI CTAG 1 cut(s) 60
TaaI ACNGT 2 cut(s) 187, 361
TaqI TCGA 4 cut(s) 22, 39, 87, 135
TasI AATT 4 cut(s) 9, 46, 142, 434
TseFI GTSAC 1 cut(s) 172
TseI GCWGC 1 cut(s) 282
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 3 cut(s) 121, 189, 223
VpaK11BI GGWCC 1 cut(s) 254
XcmI CCANNNNNNNNNTGG 1 cut(s) 184
XspI CTAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.