Rroxscaffold_1G00003270

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000483
Physical Location & Seq
Reverse (-)
3877441 .. 3878226
786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00003270.1

Sequence Viewer

Length: 786 bp
ATGGAACCACGAACTCTGCAGTTAATGGAGCTTTCAAACCCAGCAACAAATGGAACTACAAGCCCAATAACCAGCCGAGCCGAGGAGGGAAGAAGCAACCAAGCGATCGGGAGTAGTGCCAACACGCCTATCGGGCGGCCAATAACCGGTGGACTCCCACACCAAATCAACTACGAATCCTCAAGGGGCTTTACTATGACAAGGATCTCAAGTACCCAACTCCAGAGCAGATTCGAGAGATCTGTCTCTATACGAAACGATGGGCGGCAGATCGAGGACAAGAATGTCTTCTTTTGGTTCCGGAACCTCAAATCTCGAGAGAAACGGCGGATGAAGGCAATTCGGAACGTTCGAGTTGGTGGATCTCTCGATCTCAACTTTGGATCCACTAGTTCTACCGATGATGGTGGATCCATTGATCTAAACTTTGGTTCCATTTGTTCCACTGGTGCTGATGGATTTATCGATCTAGCTTTTGGGTCAAGTGTCTACTATAATGTTGACCCATATTCCTCTTCACCCTTCAACAATAATACCGGTACTACCTCCTTTGGCACAACGGGAGGACAAACTTTCATGGAACAACGAGGAGGAGATCACCGGAGGTCGAAACTCTTCCTCCGTTCCCCGTGCACGATGAGGACGTCCTTGGTAACCCGAAGACTACTTCCGAGGAAGGTAGCGTATACGGTTACTATTCCGATGGCTCGGGCGAGTTACAACGGTGGCTCTCGAGTTTCTCTTGAGCTCGGCCTCAACCCATTCGGAGCCGCCGACTTAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

261

Amino Acids

28.54

Weight (kDa)

10.25

Isoelectric Point (pI)

47.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000483)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa Rorug04G0280300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 284
AatII GACGTC 1 cut(s) 647
AccI GTMKAC 2 cut(s) 489, 686
AccIII TCCGGA 1 cut(s) 300
AciI CCGC 4 cut(s) 136, 265, 328, 771
AclI AACGTT 1 cut(s) 348
AclWI GGATC 6 cut(s) 212, 370, 378, 391, 405, 418
AcoI YGGCCR 1 cut(s) 137
AcyI GRCGYC 1 cut(s) 644
AfaI GTAC 2 cut(s) 214, 541
AfiI CCNNNNNNNGG 2 cut(s) 82, 146
AgeI ACCGGT 2 cut(s) 146, 536
AgsI TTSAA 2 cut(s) 36, 526
AhlI ACTAGT 1 cut(s) 389
AluBI AGCT 4 cut(s) 31, 473, 748, 782
AluI AGCT 4 cut(s) 31, 473, 748, 782
Alw21I GWGCWC 2 cut(s) 635, 750
Alw26I GTCTC 1 cut(s) 250
Alw44I GTGCAC 1 cut(s) 631
AlwI GGATC 6 cut(s) 212, 370, 378, 391, 405, 418
Ama87I CYCGRG 3 cut(s) 315, 708, 732
Aor13HI TCCGGA 1 cut(s) 300
AoxI GGCC 2 cut(s) 137, 751
ApaLI GTGCAC 1 cut(s) 631
AsiGI ACCGGT 2 cut(s) 146, 536
Asp700I GAANNNNTTC 2 cut(s) 287, 614
AsuHPI GGTGA 2 cut(s) 510, 590
AvaI CYCGRG 3 cut(s) 315, 708, 732
BaeGI GKGCMC 1 cut(s) 635
BamHI GGATCC 2 cut(s) 383, 410
BanII GRGCYC 1 cut(s) 750
BbsI GAAGAC 2 cut(s) 280, 667
Bbv12I GWGCWC 2 cut(s) 635, 750
BccI CCATC 4 cut(s) 254, 398, 449, 697
BceAI ACGGC 1 cut(s) 341
BcoDI GTCTC 1 cut(s) 250
BcuI ACTAGT 1 cut(s) 389
BfaI CTAG 2 cut(s) 390, 470
BfmI CTRYAG 1 cut(s) 17
BglI GCCNNNNNGGC 1 cut(s) 133
BglII AGATCT 1 cut(s) 239
BisI GCNGC 3 cut(s) 137, 266, 771
BlsI GCNGC 3 cut(s) 138, 267, 772
BmeT110I CYCGRG 3 cut(s) 315, 708, 732
BmiI GGNNCC 7 cut(s) 6, 299, 305, 385, 412, 433, 769
BpiI GAAGAC 2 cut(s) 280, 667
BpmI CTGGAG 1 cut(s) 206
BpuEI CTTGAG 3 cut(s) 166, 193, 764
Bsa29I ATCGAT 1 cut(s) 465
BsaHI GRCGYC 1 cut(s) 644
BsaJI CCNNGG 3 cut(s) 81, 648, 671
BsaWI WCCGGW 4 cut(s) 146, 300, 536, 600
BsaXI ACNNNNNCTCC 2 cut(s) 603, 633
Bsc4I CCNNNNNNNGG 2 cut(s) 82, 146
Bse118I RCCGGY 2 cut(s) 146, 536
Bse1I ACTGG 1 cut(s) 451
BseAI TCCGGA 1 cut(s) 300
BseCI ATCGAT 1 cut(s) 465
BseDI CCNNGG 3 cut(s) 81, 648, 671
BseGI GGATG 1 cut(s) 336
BseLI CCNNNNNNNGG 2 cut(s) 82, 146
BseNI ACTGG 1 cut(s) 451
BseRI GAGGAG 3 cut(s) 98, 603, 606
BseSI GKGCMC 1 cut(s) 635
BseYI CCCAGC 1 cut(s) 40
Bsh1285I CGRYCG 1 cut(s) 108
BshFI GGCC 2 cut(s) 139, 753
BshTI ACCGGT 2 cut(s) 146, 536
BshVI ATCGAT 1 cut(s) 465
BsiEI CGRYCG 1 cut(s) 108
BsiHKAI GWGCWC 2 cut(s) 635, 750
BsiHKCI CYCGRG 3 cut(s) 315, 708, 732
BsiSI CCGG 4 cut(s) 147, 301, 537, 601
BslI CCNNNNNNNGG 2 cut(s) 82, 146
BsmAI GTCTC 1 cut(s) 250
BsnI GGCC 2 cut(s) 139, 753
BsoBI CYCGRG 3 cut(s) 315, 708, 732
Bsp1286I GDGCHC 2 cut(s) 635, 750
Bsp13I TCCGGA 1 cut(s) 300
BspACI CCGC 4 cut(s) 136, 265, 328, 771
BspANI GGCC 2 cut(s) 139, 753
BspDI ATCGAT 1 cut(s) 465
BspEI TCCGGA 1 cut(s) 300
BspLI GGNNCC 7 cut(s) 6, 299, 305, 385, 412, 433, 769
BspMAI CTGCAG 1 cut(s) 21
BspPI GGATC 6 cut(s) 212, 370, 378, 391, 405, 418
BsrFI RCCGGY 2 cut(s) 146, 536
BsrI ACTGG 1 cut(s) 451
BssAI RCCGGY 2 cut(s) 146, 536
BssECI CCNNGG 3 cut(s) 81, 648, 671
BssNAI GTATAC 1 cut(s) 687
BssNI GRCGYC 1 cut(s) 644
BssT1I CCWWGG 1 cut(s) 648
Bst1107I GTATAC 1 cut(s) 687
Bst4CI ACNGT 2 cut(s) 691, 725
Bst6I CTCTTC 2 cut(s) 520, 620
BstACI GRCGYC 1 cut(s) 644
BstDEI CTNAG 2 cut(s) 778, 783
BstEII GGTNACC 1 cut(s) 652
BstF5I GGATG 1 cut(s) 336
BstMAI GTCTC 1 cut(s) 250
BstMCI CGRYCG 1 cut(s) 108
BstMWI GCNNNNNNNGC 2 cut(s) 133, 779
BstPI GGTNACC 1 cut(s) 652
BstSFI CTRYAG 1 cut(s) 17
BstSLI GKGCMC 1 cut(s) 635
BstV2I GAAGAC 2 cut(s) 280, 667
BstX2I RGATCY 5 cut(s) 204, 239, 362, 383, 410
BstYI RGATCY 5 cut(s) 204, 239, 362, 383, 410
BstZ17I GTATAC 1 cut(s) 687
Bsu15I ATCGAT 1 cut(s) 465
BsuRI GGCC 2 cut(s) 139, 753
BsuTUI ATCGAT 1 cut(s) 465
BtsCI GGATG 1 cut(s) 336
BtsIMutI CAGTG 1 cut(s) 444
Cfr10I RCCGGY 2 cut(s) 146, 536
ClaI ATCGAT 1 cut(s) 465
Csp6I GTAC 2 cut(s) 213, 540
CspAI ACCGGT 2 cut(s) 146, 536
CviAII CATG 1 cut(s) 577
CviQI GTAC 2 cut(s) 213, 540
DdeI CTNAG 2 cut(s) 778, 783
DrdI GACNNNNNNGTC 1 cut(s) 284
DseDI GACNNNNNNGTC 1 cut(s) 284
EaeI YGGCCR 1 cut(s) 137
Eam1104I CTCTTC 2 cut(s) 520, 620
EarI CTCTTC 2 cut(s) 520, 620
EciI GGCGGA 1 cut(s) 343
Ecl136II GAGCTC 1 cut(s) 748
Eco130I CCWWGG 1 cut(s) 648
Eco24I GRGCYC 1 cut(s) 750
Eco53kI GAGCTC 1 cut(s) 748
Eco88I CYCGRG 3 cut(s) 315, 708, 732
Eco91I GGTNACC 1 cut(s) 652
EcoICRI GAGCTC 1 cut(s) 748
EcoO65I GGTNACC 1 cut(s) 652
EcoT14I CCWWGG 1 cut(s) 648
EcoT38I GRGCYC 1 cut(s) 750
ErhI CCWWGG 1 cut(s) 648
FaeI CATG 1 cut(s) 580
FaiI YATR 6 cut(s) 197, 251, 495, 508, 578, 687
FalI AAGNNNNNCTT 2 cut(s) 272, 304
FatI CATG 1 cut(s) 576
FblI GTMKAC 2 cut(s) 489, 686
Fnu4HI GCNGC 3 cut(s) 137, 266, 771
FokI GGATG 1 cut(s) 343
FriOI GRGCYC 1 cut(s) 750
Fsp4HI GCNGC 3 cut(s) 137, 266, 771
FspBI CTAG 2 cut(s) 390, 470
GluI GCNGC 3 cut(s) 137, 266, 771
GsaI CCCAGC 1 cut(s) 44
GsuI CTGGAG 1 cut(s) 206
HaeIII GGCC 2 cut(s) 139, 753
HapII CCGG 4 cut(s) 147, 301, 537, 601
Hin1I GRCGYC 1 cut(s) 644
Hin1II CATG 1 cut(s) 580
HincII GTYRAC 1 cut(s) 502
HindII GTYRAC 1 cut(s) 502
HinfI GANTC 3 cut(s) 153, 176, 231
HpaII CCGG 4 cut(s) 147, 301, 537, 601
HphI GGTGA 2 cut(s) 510, 590
Hpy166II GTNNAC 5 cut(s) 152, 490, 502, 633, 687
Hpy188I TCNGA 4 cut(s) 345, 672, 702, 767
Hpy188III TCNNGA 9 cut(s) 109, 223, 235, 301, 315, 317, 368, 732, 743
Hpy8I GTNNAC 5 cut(s) 152, 490, 502, 633, 687
HpyAV CCTTC 3 cut(s) 328, 532, 670
HpyCH4III ACNGT 2 cut(s) 691, 725
HpyCH4IV ACGT 2 cut(s) 348, 644
HpyCH4V TGCA 2 cut(s) 19, 633
HpyF10VI GCNNNNNNNGC 2 cut(s) 133, 779
HpyF3I CTNAG 2 cut(s) 778, 783
HpySE526I ACGT 2 cut(s) 348, 644
Hsp92I GRCGYC 1 cut(s) 644
Hsp92II CATG 1 cut(s) 580
Kpn2I TCCGGA 1 cut(s) 300
LmnI GCTCC 2 cut(s) 28, 767
LpnPI CCDG 8 cut(s) 54, 85, 160, 236, 314, 432, 550, 614
MaeI CTAG 2 cut(s) 390, 470
MaeII ACGT 2 cut(s) 348, 644
MaeIII GTNAC 3 cut(s) 652, 691, 716
MboII GAAGA 5 cut(s) 102, 280, 507, 607, 672
MflI RGATCY 5 cut(s) 204, 239, 362, 383, 410
MhlI GDGCHC 2 cut(s) 635, 750
MluCI AATT 1 cut(s) 339
MlyI GAGTC 1 cut(s) 147
MroI TCCGGA 1 cut(s) 300
MroXI GAANNNNTTC 2 cut(s) 287, 614
MseI TTAA 1 cut(s) 23
MspI CCGG 4 cut(s) 147, 301, 537, 601
MwoI GCNNNNNNNGC 2 cut(s) 133, 779
NlaIII CATG 1 cut(s) 580
NlaIV GGNNCC 7 cut(s) 6, 299, 305, 385, 412, 433, 769
NmeAIII GCCGAG 3 cut(s) 101, 106, 729
PaeR7I CTCGAG 2 cut(s) 315, 732
PcsI WCGNNNNNNNCGW 3 cut(s) 349, 641, 771
PdmI GAANNNNTTC 2 cut(s) 287, 614
PfeI GAWTC 2 cut(s) 176, 231
PinAI ACCGGT 2 cut(s) 146, 536
PkrI GCNGC 3 cut(s) 138, 267, 772
Ple19I CGATCG 1 cut(s) 108
PleI GAGTC 1 cut(s) 147
PpsI GAGTC 1 cut(s) 147
Psp124BI GAGCTC 1 cut(s) 750
Psp1406I AACGTT 1 cut(s) 348
PspEI GGTNACC 1 cut(s) 652
PspFI CCCAGC 1 cut(s) 40
PspN4I GGNNCC 7 cut(s) 6, 299, 305, 385, 412, 433, 769
PstI CTGCAG 1 cut(s) 21
PsuI RGATCY 5 cut(s) 204, 239, 362, 383, 410
PvuI CGATCG 1 cut(s) 108
RsaI GTAC 2 cut(s) 214, 541
RsaNI GTAC 2 cut(s) 213, 540
SacI GAGCTC 1 cut(s) 750
SaqAI TTAA 1 cut(s) 23
SatI GCNGC 3 cut(s) 137, 266, 771
SchI GAGTC 1 cut(s) 147
SduI GDGCHC 2 cut(s) 635, 750
SfcI CTRYAG 1 cut(s) 17
Sfr274I CTCGAG 2 cut(s) 315, 732
SlaI CTCGAG 2 cut(s) 315, 732
SmlI CTYRAG 5 cut(s) 181, 208, 315, 732, 743
SmoI CTYRAG 5 cut(s) 181, 208, 315, 732, 743
SpeI ACTAGT 1 cut(s) 389
Sse9I AATT 1 cut(s) 339
SsiI CCGC 4 cut(s) 136, 265, 328, 771
SspMI CTAG 2 cut(s) 390, 470
SstI GAGCTC 1 cut(s) 750
StyI CCWWGG 1 cut(s) 648
TaaI ACNGT 2 cut(s) 691, 725
TaiI ACGT 2 cut(s) 351, 647
TaqI TCGA 8 cut(s) 234, 273, 316, 352, 369, 465, 608, 733
TasI AATT 1 cut(s) 339
TauI GCSGC 3 cut(s) 139, 268, 773
TfiI GAWTC 2 cut(s) 176, 231
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TscAI CASTG 1 cut(s) 451
TspDTI ATGAA 2 cut(s) 347, 565
TspGWI ACGGA 1 cut(s) 611
TspRI CASTG 1 cut(s) 451
VneI GTGCAC 1 cut(s) 631
XhoI CTCGAG 2 cut(s) 315, 732
XmiI GTMKAC 2 cut(s) 489, 686
XmnI GAANNNNTTC 2 cut(s) 287, 614
XspI CTAG 2 cut(s) 390, 470
ZraI GACGTC 1 cut(s) 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.