Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000483

Physical Location & Seq

Genomic Coordinates Forward (+)

41089725 .. 41090306

Gene Structure 582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00316300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGAATTACATGCCCAGCAACCAACCGAGGAGGGAGGAAGCAACCAAGCAGCCGGGAGTAGTGCCAATACACCCGTCGTGCAGCCTAATACCCGGTGGACTCCCACACCGCCTCAACTAAGAATCCTCAAGGGCCTTTACTATGATAAGGGTTTTAAACGCCCAACTCCGCAGCGTATTCAAGAGATCCGTCTCAATCGAAACAATATGGGCAGATCGAGGACAAGAACGTCTTCTTTTGGTTCCGAACCTCAAATCTCGAGAGAGCCGCAGATGAAGGCAATTCGGAACGTTCGGGTTGGTGGTTCTCTCGATCTCAACTTTGGACCCGCTAGTTCTACCGATGAAGGTGGATCCATTAATCTAAACTTTGGTTCCATTAATTCCATCGGTGTTGATGGATCTATCGATCTAGCTTTTGGGTCAAGTGTCGACTATCATGTTGACCCATATTCCTCTTCACCCTTCAACAATAACAACAAGTACTACCTCCTTCGGCACAACAGAGGACAACCTTCCATGGAACAACGAGGAGGAGATCAGCAGGAGATCGAAACTCTTCCTCTCGTTCCCCGTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

193

Amino Acids

21.29

Weight (kDa)

9.34

Isoelectric Point (pI)

60.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii	Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa	Rorug04G0280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	229
AccI	GTMKAC	1 cut(s)	432
AciI	CCGC	4 cut(s)	110, 170, 269, 330
AclI	AACGTT	1 cut(s)	291
AclWI	GGATC	4 cut(s)	181, 348, 361, 409
AfaI	GTAC	1 cut(s)	485
AgsI	TTSAA	2 cut(s)	182, 469
AluBI	AGCT	1 cut(s)	416
AluI	AGCT	1 cut(s)	416
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	4 cut(s)	181, 348, 361, 409
Ama87I	CYCGRG	1 cut(s)	259
AoxI	GGCC	1 cut(s)	133
ApeKI	GCWGC	3 cut(s)	50, 82, 172
AseI	ATTAAT	2 cut(s)	360, 381
Asp700I	GAANNNNTTC	2 cut(s)	232, 558
AspS9I	GGNCC	2 cut(s)	133, 326
AsuC2I	CCSGG	2 cut(s)	55, 94
AsuHPI	GGTGA	1 cut(s)	453
AvaI	CYCGRG	1 cut(s)	259
AvaII	GGWCC	1 cut(s)	326
BamHI	GGATCC	1 cut(s)	353
BbsI	GAAGAC	1 cut(s)	225
BbvI	GCAGC	3 cut(s)	62, 94, 184
BccI	CCATC	2 cut(s)	392, 395
BcnI	CCSGG	2 cut(s)	55, 94
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	2 cut(s)	333, 413
BisI	GCNGC	4 cut(s)	51, 83, 173, 269
BlsI	GCNGC	4 cut(s)	52, 84, 174, 270
BmcAI	AGTACT	1 cut(s)	485
Bme1390I	CCNGG	2 cut(s)	55, 94
Bme18I	GGWCC	1 cut(s)	326
BmeT110I	CYCGRG	1 cut(s)	259
BmgT120I	GGNCC	2 cut(s)	133, 326
BmiI	GGNNCC	4 cut(s)	244, 328, 355, 376
BmrFI	CCNGG	2 cut(s)	55, 94
BpiI	GAAGAC	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	113
BpuMI	CCSGG	2 cut(s)	55, 94
Bsa29I	ATCGAT	1 cut(s)	408
BsaJI	CCNNGG	2 cut(s)	27, 519
BseCI	ATCGAT	1 cut(s)	408
BseDI	CCNNGG	2 cut(s)	27, 519
BseRI	GAGGAG	3 cut(s)	44, 546, 549
BseXI	GCAGC	3 cut(s)	62, 94, 184
BseYI	CCCAGC	1 cut(s)	15
BsgI	GTGCAG	1 cut(s)	101
BshFI	GGCC	1 cut(s)	135
BshVI	ATCGAT	1 cut(s)	408
BsiHKCI	CYCGRG	1 cut(s)	259
BsiSI	CCGG	2 cut(s)	54, 94
BsmAI	GTCTC	1 cut(s)	197
BsmBI	CGTCTC	1 cut(s)	197
BsnI	GGCC	1 cut(s)	135
BsoBI	CYCGRG	1 cut(s)	259
Bsp143I	GATC	8 cut(s)	186, 215, 313, 353, 401, 409, 538, 549
Bsp19I	CCATGG	1 cut(s)	519
BspACI	CCGC	4 cut(s)	110, 170, 269, 330
BspANI	GGCC	1 cut(s)	135
BspDI	ATCGAT	1 cut(s)	408
BspLI	GGNNCC	4 cut(s)	244, 328, 355, 376
BspPI	GGATC	4 cut(s)	181, 348, 361, 409
BssECI	CCNNGG	2 cut(s)	27, 519
BssMI	GATC	8 cut(s)	186, 215, 313, 353, 401, 409, 538, 549
BssT1I	CCWWGG	1 cut(s)	519
Bst6I	CTCTTC	2 cut(s)	463, 564
BstDEI	CTNAG	1 cut(s)	119
BstDSI	CCRYGG	1 cut(s)	519
BstKTI	GATC	8 cut(s)	189, 218, 316, 356, 404, 412, 541, 552
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	8 cut(s)	186, 215, 313, 353, 401, 409, 538, 549
BstNSI	RCATGY	1 cut(s)	14
BstSCI	CCNGG	2 cut(s)	53, 92
BstV1I	GCAGC	3 cut(s)	62, 94, 184
BstV2I	GAAGAC	1 cut(s)	225
BstX2I	RGATCY	3 cut(s)	186, 353, 401
BstYI	RGATCY	3 cut(s)	186, 353, 401
Bsu15I	ATCGAT	1 cut(s)	408
BsuRI	GGCC	1 cut(s)	135
BsuTUI	ATCGAT	1 cut(s)	408
BtgI	CCRYGG	1 cut(s)	519
Cfr13I	GGNCC	2 cut(s)	133, 326
ClaI	ATCGAT	1 cut(s)	408
Csp6I	GTAC	1 cut(s)	484
CviAII	CATG	3 cut(s)	11, 440, 520
CviJI	RGCY	5 cut(s)	53, 85, 135, 268, 416
CviKI_1	RGCY	5 cut(s)	53, 85, 135, 268, 416
CviQI	GTAC	1 cut(s)	484
DdeI	CTNAG	1 cut(s)	119
DpnI	GATC	8 cut(s)	188, 217, 315, 355, 403, 411, 540, 551
DpnII	GATC	8 cut(s)	186, 215, 313, 353, 401, 409, 538, 549
DraI	TTTAAA	1 cut(s)	157
DrdI	GACNNNNNNGTC	1 cut(s)	229
DseDI	GACNNNNNNGTC	1 cut(s)	229
Eam1104I	CTCTTC	2 cut(s)	463, 564
EarI	CTCTTC	2 cut(s)	463, 564
Eco130I	CCWWGG	1 cut(s)	519
Eco47I	GGWCC	1 cut(s)	326
Eco88I	CYCGRG	1 cut(s)	259
EcoO109I	RGGNCCY	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	519
ErhI	CCWWGG	1 cut(s)	519
Esp3I	CGTCTC	1 cut(s)	197
FaeI	CATG	3 cut(s)	14, 443, 523
FaiI	YATR	7 cut(s)	12, 144, 209, 441, 451, 521, 580
FalI	AAGNNNNNCTT	2 cut(s)	217, 249
FatI	CATG	3 cut(s)	10, 439, 519
FauI	CCCGC	1 cut(s)	337
FblI	GTMKAC	1 cut(s)	432
Fnu4HI	GCNGC	4 cut(s)	51, 83, 173, 269
Fsp4HI	GCNGC	4 cut(s)	51, 83, 173, 269
FspBI	CTAG	2 cut(s)	333, 413
GluI	GCNGC	4 cut(s)	51, 83, 173, 269
GsaI	CCCAGC	1 cut(s)	19
HaeIII	GGCC	1 cut(s)	135
HapII	CCGG	2 cut(s)	54, 94
Hin1II	CATG	3 cut(s)	14, 443, 523
HincII	GTYRAC	2 cut(s)	433, 445
HindII	GTYRAC	2 cut(s)	433, 445
HinfI	GANTC	2 cut(s)	100, 123
HpaII	CCGG	2 cut(s)	54, 94
HphI	GGTGA	1 cut(s)	453
Hpy166II	GTNNAC	3 cut(s)	99, 433, 445
Hpy188I	TCNGA	2 cut(s)	247, 288
Hpy188III	TCNNGA	4 cut(s)	182, 259, 261, 311
Hpy8I	GTNNAC	3 cut(s)	99, 433, 445
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	5 cut(s)	271, 341, 475, 503, 525
HpyCH4IV	ACGT	2 cut(s)	230, 291
HpyCH4V	TGCA	2 cut(s)	82, 578
HpyF3I	CTNAG	1 cut(s)	119
HpySE526I	ACGT	2 cut(s)	230, 291
Hsp92II	CATG	3 cut(s)	14, 443, 523
Kzo9I	GATC	8 cut(s)	186, 215, 313, 353, 401, 409, 538, 549
LpnPI	CCDG	4 cut(s)	29, 67, 107, 530
Lsp1109I	GCAGC	3 cut(s)	62, 94, 184
MaeI	CTAG	2 cut(s)	333, 413
MaeII	ACGT	2 cut(s)	230, 291
MalI	GATC	8 cut(s)	188, 217, 315, 355, 403, 411, 540, 551
MboI	GATC	8 cut(s)	186, 215, 313, 353, 401, 409, 538, 549
MboII	GAAGA	3 cut(s)	225, 450, 551
MflI	RGATCY	3 cut(s)	186, 353, 401
MluCI	AATT	3 cut(s)	5, 282, 382
MlyI	GAGTC	1 cut(s)	94
MroXI	GAANNNNTTC	2 cut(s)	232, 558
MseI	TTAA	3 cut(s)	156, 360, 381
MspI	CCGG	2 cut(s)	54, 94
MspR9I	CCNGG	2 cut(s)	55, 94
NciI	CCSGG	2 cut(s)	55, 94
NcoI	CCATGG	1 cut(s)	519
NdeII	GATC	8 cut(s)	186, 215, 313, 353, 401, 409, 538, 549
NlaIII	CATG	3 cut(s)	14, 443, 523
NlaIV	GGNNCC	4 cut(s)	244, 328, 355, 376
NspI	RCATGY	1 cut(s)	14
PaeR7I	CTCGAG	1 cut(s)	259
PdmI	GAANNNNTTC	2 cut(s)	232, 558
PfeI	GAWTC	1 cut(s)	123
PkrI	GCNGC	4 cut(s)	52, 84, 174, 270
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
PshBI	ATTAAT	2 cut(s)	360, 381
Psp1406I	AACGTT	1 cut(s)	291
PspFI	CCCAGC	1 cut(s)	15
PspN4I	GGNNCC	4 cut(s)	244, 328, 355, 376
PspPI	GGNCC	2 cut(s)	133, 326
PsuI	RGATCY	3 cut(s)	186, 353, 401
RsaI	GTAC	1 cut(s)	485
RsaNI	GTAC	1 cut(s)	484
SalI	GTCGAC	1 cut(s)	431
SaqAI	TTAA	3 cut(s)	156, 360, 381
SatI	GCNGC	4 cut(s)	51, 83, 173, 269
Sau3AI	GATC	8 cut(s)	186, 215, 313, 353, 401, 409, 538, 549
Sau96I	GGNCC	2 cut(s)	133, 326
ScaI	AGTACT	1 cut(s)	485
SchI	GAGTC	1 cut(s)	94
ScrFI	CCNGG	2 cut(s)	55, 94
SetI	ASST	7 cut(s)	233, 253, 294, 352, 418, 492, 517
Sfr274I	CTCGAG	1 cut(s)	259
SinI	GGWCC	1 cut(s)	326
SlaI	CTCGAG	1 cut(s)	259
SmlI	CTYRAG	2 cut(s)	128, 259
SmoI	CTYRAG	2 cut(s)	128, 259
Sse9I	AATT	3 cut(s)	5, 282, 382
SsiI	CCGC	4 cut(s)	110, 170, 269, 330
SspMI	CTAG	2 cut(s)	333, 413
StyD4I	CCNGG	2 cut(s)	53, 92
StyI	CCWWGG	1 cut(s)	519
TaiI	ACGT	2 cut(s)	233, 294
TaqI	TCGA	7 cut(s)	199, 218, 260, 312, 408, 432, 552
TasI	AATT	3 cut(s)	5, 282, 382
TatI	WGTACW	1 cut(s)	483
TauI	GCSGC	1 cut(s)	271
TfiI	GAWTC	1 cut(s)	123
Tru1I	TTAA	3 cut(s)	156, 360, 381
Tru9I	TTAA	3 cut(s)	156, 360, 381
TseI	GCWGC	3 cut(s)	50, 82, 172
TspDTI	ATGAA	2 cut(s)	290, 360
TspGWI	ACGGA	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	326
VspI	ATTAAT	2 cut(s)	360, 381
XceI	RCATGY	1 cut(s)	14
XhoI	CTCGAG	1 cut(s)	259
XmiI	GTMKAC	1 cut(s)	432
XmnI	GAANNNNTTC	2 cut(s)	232, 558
XspI	CTAG	2 cut(s)	333, 413
ZrmI	AGTACT	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.