Rroxscaffold_4G00289430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000483
Physical Location & Seq
Forward (+)
10056801 .. 10057214
414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00289430.1

Sequence Viewer

Length: 414 bp
ATGAAGGCATTTCGGAACGTGCGGGTTAGCGGATCTCTCGATCTCAACTTTGGACCCGCAAGTTCTACGGATGAAGGTGGATCCATCGATCCGAACTTTGGTCCCACTATTCCTACGGGAGCCGATGGATCCATCTATCTAGCTTTTGGGTCAAACGTCGACCATCATGTTGACCCAAATTCCACTTCACCCTTCAATAATAACAACAGTACTACCTCCTTCGGCACGACGGAGGACAACCTTCCATGGAACAACGAGGAGGAGATCGGCGGAGATCGAAACTCTTCCTCTGTTCCACGAAACCGTGAAGACATCCTTGGTAACCCGAAGACTACATCCGAGGAAGGTAGTGCATTTGGTTACTATTACGGGAGGCTCGGGCGGTTACAACGGTGGCTCTCCTGTTTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

14.83

Weight (kDa)

4.64

Isoelectric Point (pI)

45.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000483)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa Rorug04G0280300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 159
AciI CCGC 5 cut(s) 22, 30, 57, 270, 382
AclWI GGATC 6 cut(s) 40, 75, 83, 88, 123, 136
AcsI RAATTY 1 cut(s) 178
AfaI GTAC 1 cut(s) 211
AfiI CCNNNNNNNGG 1 cut(s) 98
AgsI TTSAA 1 cut(s) 196
AjuI GAANNNNNNNTTGG 4 cut(s) 169, 201, 300, 332
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
AlwI GGATC 6 cut(s) 40, 75, 83, 88, 123, 136
Ama87I CYCGRG 1 cut(s) 377
ApoI RAATTY 1 cut(s) 178
Asp700I GAANNNNTTC 1 cut(s) 283
AspS9I GGNCC 2 cut(s) 53, 101
AsuHPI GGTGA 1 cut(s) 180
AvaI CYCGRG 1 cut(s) 377
AvaII GGWCC 2 cut(s) 53, 101
BamHI GGATCC 2 cut(s) 80, 128
BbsI GAAGAC 2 cut(s) 315, 335
BccI CCATC 4 cut(s) 92, 119, 140, 171
BfaI CTAG 1 cut(s) 140
BmcAI AGTACT 1 cut(s) 211
Bme18I GGWCC 2 cut(s) 53, 101
BmeT110I CYCGRG 1 cut(s) 377
BmgT120I GGNCC 2 cut(s) 53, 101
BmiI GGNNCC 5 cut(s) 55, 82, 103, 121, 130
BpiI GAAGAC 2 cut(s) 315, 335
Bsa29I ATCGAT 1 cut(s) 87
BsaJI CCNNGG 3 cut(s) 245, 316, 339
Bsc4I CCNNNNNNNGG 1 cut(s) 98
BseCI ATCGAT 1 cut(s) 87
BseDI CCNNGG 3 cut(s) 245, 316, 339
BseGI GGATG 3 cut(s) 76, 312, 335
BseLI CCNNNNNNNGG 1 cut(s) 98
BseRI GAGGAG 2 cut(s) 272, 275
BshVI ATCGAT 1 cut(s) 87
BsiHKCI CYCGRG 1 cut(s) 377
BslFI GGGAC 1 cut(s) 87
BslI CCNNNNNNNGG 1 cut(s) 98
BsmFI GGGAC 1 cut(s) 87
BsoBI CYCGRG 1 cut(s) 377
Bsp143I GATC 7 cut(s) 32, 40, 80, 88, 128, 264, 274
Bsp19I CCATGG 1 cut(s) 245
BspACI CCGC 5 cut(s) 22, 30, 57, 270, 382
BspDI ATCGAT 1 cut(s) 87
BspLI GGNNCC 5 cut(s) 55, 82, 103, 121, 130
BspPI GGATC 6 cut(s) 40, 75, 83, 88, 123, 136
BssECI CCNNGG 3 cut(s) 245, 316, 339
BssMI GATC 7 cut(s) 32, 40, 80, 88, 128, 264, 274
BssT1I CCWWGG 2 cut(s) 245, 316
Bst4CI ACNGT 3 cut(s) 209, 305, 393
Bst6I CTCTTC 1 cut(s) 289
BstDSI CCRYGG 1 cut(s) 245
BstEII GGTNACC 1 cut(s) 320
BstF5I GGATG 3 cut(s) 76, 312, 335
BstKTI GATC 7 cut(s) 35, 43, 83, 91, 131, 267, 277
BstMBI GATC 7 cut(s) 32, 40, 80, 88, 128, 264, 274
BstPI GGTNACC 1 cut(s) 320
BstV2I GAAGAC 2 cut(s) 315, 335
BstX2I RGATCY 3 cut(s) 32, 80, 128
BstYI RGATCY 3 cut(s) 32, 80, 128
Bsu15I ATCGAT 1 cut(s) 87
BsuTUI ATCGAT 1 cut(s) 87
BtgI CCRYGG 1 cut(s) 245
BtsCI GGATG 3 cut(s) 76, 312, 335
Cfr13I GGNCC 2 cut(s) 53, 101
ClaI ATCGAT 1 cut(s) 87
Csp6I GTAC 1 cut(s) 210
CviAII CATG 2 cut(s) 167, 246
CviJI RGCY 4 cut(s) 122, 143, 376, 397
CviKI_1 RGCY 4 cut(s) 122, 143, 376, 397
CviQI GTAC 1 cut(s) 210
DpnI GATC 7 cut(s) 34, 42, 82, 90, 130, 266, 276
DpnII GATC 7 cut(s) 32, 40, 80, 88, 128, 264, 274
Eam1104I CTCTTC 1 cut(s) 289
EarI CTCTTC 1 cut(s) 289
EciI GGCGGA 1 cut(s) 285
Eco130I CCWWGG 2 cut(s) 245, 316
Eco47I GGWCC 2 cut(s) 53, 101
Eco88I CYCGRG 1 cut(s) 377
Eco91I GGTNACC 1 cut(s) 320
EcoO65I GGTNACC 1 cut(s) 320
EcoT14I CCWWGG 2 cut(s) 245, 316
ErhI CCWWGG 2 cut(s) 245, 316
FaeI CATG 2 cut(s) 170, 249
FaiI YATR 2 cut(s) 168, 247
FalI AAGNNNNNCTT 2 cut(s) 300, 332
FaqI GGGAC 1 cut(s) 87
FatI CATG 2 cut(s) 166, 245
FauI CCCGC 2 cut(s) 15, 64
FblI GTMKAC 1 cut(s) 159
FokI GGATG 3 cut(s) 83, 299, 322
FspBI CTAG 1 cut(s) 140
Hin1II CATG 2 cut(s) 170, 249
HincII GTYRAC 2 cut(s) 160, 172
HindII GTYRAC 2 cut(s) 160, 172
HphI GGTGA 1 cut(s) 180
Hpy166II GTNNAC 2 cut(s) 160, 172
Hpy188I TCNGA 3 cut(s) 15, 93, 340
Hpy188III TCNNGA 2 cut(s) 38, 411
Hpy8I GTNNAC 2 cut(s) 160, 172
Hpy99I CGWCG 2 cut(s) 161, 232
HpyAV CCTTC 5 cut(s) 68, 202, 229, 251, 338
HpyCH4III ACNGT 3 cut(s) 209, 305, 393
HpyCH4IV ACGT 2 cut(s) 18, 156
HpyCH4V TGCA 1 cut(s) 353
HpySE526I ACGT 2 cut(s) 18, 156
Hsp92II CATG 2 cut(s) 170, 249
Kzo9I GATC 7 cut(s) 32, 40, 80, 88, 128, 264, 274
LmnI GCTCC 1 cut(s) 119
MaeI CTAG 1 cut(s) 140
MaeII ACGT 2 cut(s) 18, 156
MaeIII GTNAC 3 cut(s) 320, 359, 384
MalI GATC 7 cut(s) 34, 42, 82, 90, 130, 266, 276
MboI GATC 7 cut(s) 32, 40, 80, 88, 128, 264, 274
MboII GAAGA 3 cut(s) 276, 320, 340
MflI RGATCY 3 cut(s) 32, 80, 128
MluCI AATT 1 cut(s) 178
MnlI CCTC 7 cut(s) 226, 226, 250, 253, 298, 334, 366
MroXI GAANNNNTTC 1 cut(s) 283
NcoI CCATGG 1 cut(s) 245
NdeII GATC 7 cut(s) 32, 40, 80, 88, 128, 264, 274
NlaIII CATG 2 cut(s) 170, 249
NlaIV GGNNCC 5 cut(s) 55, 82, 103, 121, 130
PdmI GAANNNNTTC 1 cut(s) 283
PspEI GGTNACC 1 cut(s) 320
PspN4I GGNNCC 5 cut(s) 55, 82, 103, 121, 130
PspPI GGNCC 2 cut(s) 53, 101
PsuI RGATCY 3 cut(s) 32, 80, 128
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
SalI GTCGAC 1 cut(s) 158
Sau3AI GATC 7 cut(s) 32, 40, 80, 88, 128, 264, 274
Sau96I GGNCC 2 cut(s) 53, 101
ScaI AGTACT 1 cut(s) 211
SetI ASST 7 cut(s) 21, 79, 145, 159, 218, 243, 349
SinI GGWCC 2 cut(s) 53, 101
Sse9I AATT 1 cut(s) 178
SsiI CCGC 5 cut(s) 22, 30, 57, 270, 382
SspMI CTAG 1 cut(s) 140
StyI CCWWGG 2 cut(s) 245, 316
TaaI ACNGT 3 cut(s) 209, 305, 393
TaiI ACGT 2 cut(s) 21, 159
TaqI TCGA 4 cut(s) 39, 87, 159, 277
TasI AATT 1 cut(s) 178
TatI WGTACW 1 cut(s) 209
TspDTI ATGAA 2 cut(s) 17, 87
TspGWI ACGGA 2 cut(s) 83, 245
VpaK11BI GGWCC 2 cut(s) 53, 101
XapI RAATTY 1 cut(s) 178
XmiI GTMKAC 1 cut(s) 159
XmnI GAANNNNTTC 1 cut(s) 283
XspI CTAG 1 cut(s) 140
ZrmI AGTACT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.