Rroxscaffold_6G00389760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000483
Physical Location & Seq
Reverse (-)
3816459 .. 3816770
312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00389760.1

Sequence Viewer

Length: 312 bp
ATGAAGGCAATTCGGAACGTTCGAGTTGGTGGATCTCTCGATCTCAACTTTGGATCCACTAGTTCTACCGATGATGGTGGATCCATTGATCTAAACTTTGGTTCCATTGGTTCCACCGGTGCCGATGGATCCATCGATCTAGCTTTTTTTGGGTCAAGTGTCGACTATAATGTTGACCCATATTCCTCTTCACCCTTCAACAATAATACCGTACTACTTCCTTTGGCACAACAGAGGACAAACTTTCATGGAACAACAAGGAGGAGATCACCAGGAGGTCGAAACTCTTCCTCTGTTCCCCGAGCACGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

10.84

Weight (kDa)

9.67

Isoelectric Point (pI)

43.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000483)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa Rorug04G0280300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 119
AccI GTMKAC 1 cut(s) 162
AclI AACGTT 1 cut(s) 18
AclWI GGATC 7 cut(s) 40, 48, 61, 75, 88, 123, 136
AfaI GTAC 1 cut(s) 213
AgeI ACCGGT 1 cut(s) 116
AgsI TTSAA 1 cut(s) 199
AhlI ACTAGT 1 cut(s) 59
AjnI CCWGG 1 cut(s) 271
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
Alw21I GWGCWC 1 cut(s) 307
AlwI GGATC 7 cut(s) 40, 48, 61, 75, 88, 123, 136
Ama87I CYCGRG 1 cut(s) 300
AsiGI ACCGGT 1 cut(s) 116
Asp700I GAANNNNTTC 1 cut(s) 286
AsuHPI GGTGA 2 cut(s) 183, 261
AvaI CYCGRG 1 cut(s) 300
BamHI GGATCC 3 cut(s) 53, 80, 128
BanI GGYRCC 1 cut(s) 119
Bbv12I GWGCWC 1 cut(s) 307
BccI CCATC 3 cut(s) 68, 119, 140
BciT130I CCWGG 1 cut(s) 273
BcuI ACTAGT 1 cut(s) 59
BfaI CTAG 2 cut(s) 60, 140
Bme1390I CCNGG 1 cut(s) 273
BmeT110I CYCGRG 1 cut(s) 300
BmiI GGNNCC 6 cut(s) 55, 82, 103, 112, 121, 130
BmrFI CCNGG 1 cut(s) 273
Bsa29I ATCGAT 1 cut(s) 135
BsaWI WCCGGW 1 cut(s) 116
Bse118I RCCGGY 1 cut(s) 116
BseBI CCWGG 1 cut(s) 273
BseCI ATCGAT 1 cut(s) 135
BseRI GAGGAG 1 cut(s) 277
BshNI GGYRCC 1 cut(s) 119
BshTI ACCGGT 1 cut(s) 116
BshVI ATCGAT 1 cut(s) 135
BsiHKAI GWGCWC 1 cut(s) 307
BsiHKCI CYCGRG 1 cut(s) 300
BsiSI CCGG 1 cut(s) 117
BsoBI CYCGRG 1 cut(s) 300
Bsp1286I GDGCHC 1 cut(s) 307
Bsp143I GATC 8 cut(s) 32, 40, 53, 80, 88, 128, 136, 266
BspDI ATCGAT 1 cut(s) 135
BspLI GGNNCC 6 cut(s) 55, 82, 103, 112, 121, 130
BspPI GGATC 7 cut(s) 40, 48, 61, 75, 88, 123, 136
BspT107I GGYRCC 1 cut(s) 119
BsrFI RCCGGY 1 cut(s) 116
BssAI RCCGGY 1 cut(s) 116
BssMI GATC 8 cut(s) 32, 40, 53, 80, 88, 128, 136, 266
Bst2UI CCWGG 1 cut(s) 273
Bst4CI ACNGT 1 cut(s) 211
Bst6I CTCTTC 2 cut(s) 193, 292
BstKTI GATC 8 cut(s) 35, 43, 56, 83, 91, 131, 139, 269
BstMBI GATC 8 cut(s) 32, 40, 53, 80, 88, 128, 136, 266
BstNI CCWGG 1 cut(s) 273
BstSCI CCNGG 1 cut(s) 271
BstX2I RGATCY 4 cut(s) 32, 53, 80, 128
BstYI RGATCY 4 cut(s) 32, 53, 80, 128
Bsu15I ATCGAT 1 cut(s) 135
BsuTUI ATCGAT 1 cut(s) 135
Cfr10I RCCGGY 1 cut(s) 116
ClaI ATCGAT 1 cut(s) 135
Csp6I GTAC 1 cut(s) 212
CspAI ACCGGT 1 cut(s) 116
CviAII CATG 1 cut(s) 248
CviJI RGCY 1 cut(s) 143
CviKI_1 RGCY 1 cut(s) 143
CviQI GTAC 1 cut(s) 212
DpnI GATC 8 cut(s) 34, 42, 55, 82, 90, 130, 138, 268
DpnII GATC 8 cut(s) 32, 40, 53, 80, 88, 128, 136, 266
Eam1104I CTCTTC 2 cut(s) 193, 292
EarI CTCTTC 2 cut(s) 193, 292
Eco88I CYCGRG 1 cut(s) 300
EcoRII CCWGG 1 cut(s) 271
FaeI CATG 1 cut(s) 251
FaiI YATR 3 cut(s) 168, 181, 249
FatI CATG 1 cut(s) 247
FblI GTMKAC 1 cut(s) 162
FspBI CTAG 2 cut(s) 60, 140
HapII CCGG 1 cut(s) 117
Hin1II CATG 1 cut(s) 251
HincII GTYRAC 2 cut(s) 163, 175
HindII GTYRAC 2 cut(s) 163, 175
HpaII CCGG 1 cut(s) 117
HphI GGTGA 2 cut(s) 183, 261
Hpy166II GTNNAC 2 cut(s) 163, 175
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 1 cut(s) 38
Hpy8I GTNNAC 2 cut(s) 163, 175
HpyAV CCTTC 1 cut(s) 205
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4IV ACGT 1 cut(s) 18
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 1 cut(s) 251
Kzo9I GATC 8 cut(s) 32, 40, 53, 80, 88, 128, 136, 266
LpnPI CCDG 3 cut(s) 130, 258, 285
MaeI CTAG 2 cut(s) 60, 140
MaeII ACGT 1 cut(s) 18
MalI GATC 8 cut(s) 34, 42, 55, 82, 90, 130, 138, 268
MboI GATC 8 cut(s) 32, 40, 53, 80, 88, 128, 136, 266
MboII GAAGA 2 cut(s) 180, 279
MflI RGATCY 4 cut(s) 32, 53, 80, 128
MhlI GDGCHC 1 cut(s) 307
MluCI AATT 1 cut(s) 9
MnlI CCTC 5 cut(s) 196, 228, 255, 269, 301
MroXI GAANNNNTTC 1 cut(s) 286
MspI CCGG 1 cut(s) 117
MspR9I CCNGG 1 cut(s) 273
MvaI CCWGG 1 cut(s) 273
NdeII GATC 8 cut(s) 32, 40, 53, 80, 88, 128, 136, 266
NlaIII CATG 1 cut(s) 251
NlaIV GGNNCC 6 cut(s) 55, 82, 103, 112, 121, 130
PcsI WCGNNNNNNNCGW 1 cut(s) 19
PdmI GAANNNNTTC 1 cut(s) 286
PinAI ACCGGT 1 cut(s) 116
Psp1406I AACGTT 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 271
PspGI CCWGG 1 cut(s) 271
PspN4I GGNNCC 6 cut(s) 55, 82, 103, 112, 121, 130
PsuI RGATCY 4 cut(s) 32, 53, 80, 128
RsaI GTAC 1 cut(s) 213
RsaNI GTAC 1 cut(s) 212
SalI GTCGAC 1 cut(s) 161
Sau3AI GATC 8 cut(s) 32, 40, 53, 80, 88, 128, 136, 266
ScrFI CCNGG 1 cut(s) 273
SduI GDGCHC 1 cut(s) 307
SetI ASST 3 cut(s) 21, 145, 280
SgrAI CRCCGGYG 1 cut(s) 116
SpeI ACTAGT 1 cut(s) 59
Sse9I AATT 1 cut(s) 9
SspMI CTAG 2 cut(s) 60, 140
StyD4I CCNGG 1 cut(s) 271
TaaI ACNGT 1 cut(s) 211
TaiI ACGT 1 cut(s) 21
TaqI TCGA 5 cut(s) 22, 39, 135, 162, 280
TasI AATT 1 cut(s) 9
TspDTI ATGAA 2 cut(s) 17, 236
XmiI GTMKAC 1 cut(s) 162
XmnI GAANNNNTTC 1 cut(s) 286
XspI CTAG 2 cut(s) 60, 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.