Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000483

Physical Location & Seq

Genomic Coordinates Reverse (-)

7764057 .. 7768398

Gene Structure 4342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00224580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGAAGGCATTTCGGAAAGTCCGGGTTGGAGGATCTCTCGATCTCAACTTTGGACCTGCAAGTTCTGCAGATGAAGGTGGATCCATTGCTCCGAACTTTGGTTCCACCGATCCAATAGGTGCCGATAGATCCGTCGATCTATCTTTTGGGTCAAACGTCAACTATCATGTTGACCCATATTCCACTTCTCCTCTCAACAACAACAACAGTACTACCTCCTTCGGCATAACGGAGGTCAACCATCCATGGAACAAAGAGGAGGAGATCAGCGAGGAGATTGAAACTCTTCCTCTGTTCCCCGTGCATAGGGAGGACATCTTTGGTAACCCGATGACTACTTCGAGAGGAAGGTATAGAATTGTCCCCTTAAAGCAGCACTGGAAATCTGGAGACCAACTTGGAACTGGTCTCACCATTGTTCTTGTCCGGTCCAAGGACCTTGAGAAGTGGAAGCAAGCCGAACTGAACTGCAGGAACTGTTGCAGAACGGGACTGCAGGAACTGCTGCAGAAATGGACTGCAGGAACTGCTGCAGAAATGGACTGCAGGAACGCTGCAGCAGAAATGGACTGCAGGAACTGCTGCAGAAATGGACTGCAGGGACTGCTGCAGAAATGGACTGCAGGAACTGCAGAACGGACTGCAGGGAAATGCTGCAGAAATGGACTGCAGGAACTGCTGCAGAACGGACTGCAGGAAATGCCGCAGAACCGGACTGCAGGGAACTGCTGCAGAAATGGACTGCAGGAACTGCTGCAGAAATGGACTGCGAGGAACTGCTGCAGAAATGGGACTGCAGGGAAGAACGATGAAGGAGCCATGGAACTTGTTGCTGCTTCTTGTGAGTTGCAGAGGGAGAAAGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

289

Amino Acids

31.85

Weight (kDa)

7.44

Isoelectric Point (pI)

37.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii	Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa	Rorug04G0280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	64
AccB1I	GGYRCC	1 cut(s)	119
AciI	CCGC	1 cut(s)	704
AclWI	GGATC	5 cut(s)	40, 75, 88, 104, 123
AfaI	GTAC	1 cut(s)	211
AfiI	CCNNNNNNNGG	3 cut(s)	98, 306, 433
AgsI	TTSAA	1 cut(s)	281
AloI	GAACNNNNNNTCC	2 cut(s)	86, 118
Alw26I	GTCTC	2 cut(s)	384, 413
AlwI	GGATC	5 cut(s)	40, 75, 88, 104, 123
AlwNI	CAGNNNCTG	8 cut(s)	477, 502, 527, 579, 604, 629, 676, 751
Asp700I	GAANNNNTTC	1 cut(s)	285
AspS9I	GGNCC	3 cut(s)	53, 429, 436
AsuC2I	CCSGG	1 cut(s)	23
AsuHPI	GGTGA	1 cut(s)	403
AvaII	GGWCC	3 cut(s)	53, 429, 436
BamHI	GGATCC	1 cut(s)	80
BanI	GGYRCC	1 cut(s)	119
BccI	CCATC	1 cut(s)	249
BcnI	CCSGG	1 cut(s)	23
BcoDI	GTCTC	2 cut(s)	384, 413
BfuAI	ACCTGC	1 cut(s)	64
BmcAI	AGTACT	1 cut(s)	211
Bme1390I	CCNGG	1 cut(s)	23
Bme18I	GGWCC	3 cut(s)	53, 429, 436
BmgT120I	GGNCC	3 cut(s)	53, 429, 436
BmiI	GGNNCC	4 cut(s)	82, 103, 121, 817
BmrFI	CCNGG	1 cut(s)	23
BplI	GAGNNNNNCTC	2 cut(s)	21, 53
BpmI	CTGGAG	1 cut(s)	408
BpuEI	CTTGAG	1 cut(s)	461
BpuMI	CCSGG	1 cut(s)	23
BsaI	GGTCTC	2 cut(s)	384, 413
BsaJI	CCNNGG	3 cut(s)	245, 432, 819
BsaWI	WCCGGW	2 cut(s)	426, 711
Bsc4I	CCNNNNNNNGG	3 cut(s)	98, 306, 433
Bse1I	ACTGG	2 cut(s)	383, 409
Bse3DI	GCAATG	1 cut(s)	84
BseDI	CCNNGG	3 cut(s)	245, 432, 819
BseGI	GGATG	1 cut(s)	241
BseLI	CCNNNNNNNGG	3 cut(s)	98, 306, 433
BseMI	GCAATG	1 cut(s)	84
BseNI	ACTGG	2 cut(s)	383, 409
BseRI	GAGGAG	4 cut(s)	180, 272, 275, 287
BshNI	GGYRCC	1 cut(s)	119
BsiSI	CCGG	3 cut(s)	22, 427, 712
BslFI	GGGAC	4 cut(s)	347, 504, 615, 805
BslI	CCNNNNNNNGG	3 cut(s)	98, 306, 433
BsmAI	GTCTC	2 cut(s)	384, 413
BsmFI	GGGAC	4 cut(s)	347, 504, 615, 805
Bso31I	GGTCTC	2 cut(s)	384, 413
Bsp143I	GATC	7 cut(s)	32, 40, 80, 109, 128, 136, 264
Bsp19I	CCATGG	2 cut(s)	245, 819
BspACI	CCGC	1 cut(s)	704
BspLI	GGNNCC	4 cut(s)	82, 103, 121, 817
BspMI	ACCTGC	1 cut(s)	64
BspPI	GGATC	5 cut(s)	40, 75, 88, 104, 123
BspT107I	GGYRCC	1 cut(s)	119
BspTNI	GGTCTC	2 cut(s)	384, 413
BsrDI	GCAATG	1 cut(s)	84
BsrI	ACTGG	2 cut(s)	383, 409
BssECI	CCNNGG	3 cut(s)	245, 432, 819
BssMI	GATC	7 cut(s)	32, 40, 80, 109, 128, 136, 264
BssT1I	CCWWGG	3 cut(s)	245, 432, 819
Bst4CI	ACNGT	2 cut(s)	209, 479
Bst6I	CTCTTC	1 cut(s)	291
BstAPI	GCANNNNNTGC	9 cut(s)	65, 502, 527, 579, 604, 629, 676, 700, 751
BstC8I	GCNNGC	1 cut(s)	456
BstDSI	CCRYGG	2 cut(s)	245, 819
BstEII	GGTNACC	1 cut(s)	323
BstF5I	GGATG	1 cut(s)	241
BstKTI	GATC	7 cut(s)	35, 43, 83, 112, 131, 139, 267
BstMAI	GTCTC	2 cut(s)	384, 413
BstMBI	GATC	7 cut(s)	32, 40, 80, 109, 128, 136, 264
BstMWI	GCNNNNNNNGC	9 cut(s)	65, 502, 527, 579, 604, 629, 676, 700, 751
BstPI	GGTNACC	1 cut(s)	323
BstSCI	CCNGG	1 cut(s)	21
BstX2I	RGATCY	3 cut(s)	32, 80, 128
BstYI	RGATCY	3 cut(s)	32, 80, 128
BtgI	CCRYGG	2 cut(s)	245, 819
BtsCI	GGATG	1 cut(s)	241
BtsIMutI	CAGTG	1 cut(s)	376
BveI	ACCTGC	1 cut(s)	64
Cac8I	GCNNGC	1 cut(s)	456
CaiI	CAGNNNCTG	8 cut(s)	477, 502, 527, 579, 604, 629, 676, 751
Cfr13I	GGNCC	3 cut(s)	53, 429, 436
Csp6I	GTAC	1 cut(s)	210
CviAII	CATG	3 cut(s)	167, 246, 820
CviJI	RGCY	2 cut(s)	458, 818
CviKI_1	RGCY	2 cut(s)	458, 818
CviQI	GTAC	1 cut(s)	210
DpnI	GATC	7 cut(s)	34, 42, 82, 111, 130, 138, 266
DpnII	GATC	7 cut(s)	32, 40, 80, 109, 128, 136, 264
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Eco130I	CCWWGG	3 cut(s)	245, 432, 819
Eco31I	GGTCTC	2 cut(s)	384, 413
Eco47I	GGWCC	3 cut(s)	53, 429, 436
Eco91I	GGTNACC	1 cut(s)	323
EcoO109I	RGGNCCY	1 cut(s)	436
EcoO65I	GGTNACC	1 cut(s)	323
EcoT14I	CCWWGG	3 cut(s)	245, 432, 819
ErhI	CCWWGG	3 cut(s)	245, 432, 819
FaeI	CATG	3 cut(s)	170, 249, 823
FaiI	YATR	7 cut(s)	168, 178, 227, 247, 306, 354, 821
FaqI	GGGAC	4 cut(s)	347, 504, 615, 805
FatI	CATG	3 cut(s)	166, 245, 819
FokI	GGATG	1 cut(s)	228
GsuI	CTGGAG	1 cut(s)	408
HapII	CCGG	3 cut(s)	22, 427, 712
Hin1II	CATG	3 cut(s)	170, 249, 823
HincII	GTYRAC	3 cut(s)	160, 172, 238
HindII	GTYRAC	3 cut(s)	160, 172, 238
HpaII	CCGG	3 cut(s)	22, 427, 712
HphI	GGTGA	1 cut(s)	403
Hpy166II	GTNNAC	3 cut(s)	160, 172, 238
Hpy188I	TCNGA	2 cut(s)	15, 93
Hpy188III	TCNNGA	3 cut(s)	38, 342, 387
Hpy8I	GTNNAC	3 cut(s)	160, 172, 238
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	4 cut(s)	68, 229, 342, 806
HpyCH4III	ACNGT	2 cut(s)	209, 479
HpyCH4IV	ACGT	1 cut(s)	156
HpyF10VI	GCNNNNNNNGC	9 cut(s)	65, 502, 527, 579, 604, 629, 676, 700, 751
HpySE526I	ACGT	1 cut(s)	156
Hsp92II	CATG	3 cut(s)	170, 249, 823
Kzo9I	GATC	7 cut(s)	32, 40, 80, 109, 128, 136, 264
LmnI	GCTCC	2 cut(s)	94, 815
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	7 cut(s)	34, 42, 82, 111, 130, 138, 266
MboI	GATC	7 cut(s)	32, 40, 80, 109, 128, 136, 264
MboII	GAAGA	2 cut(s)	278, 814
MflI	RGATCY	3 cut(s)	32, 80, 128
MluCI	AATT	1 cut(s)	357
MmeI	TCCRAC	1 cut(s)	7
MroXI	GAANNNNTTC	1 cut(s)	285
MseI	TTAA	1 cut(s)	368
MspI	CCGG	3 cut(s)	22, 427, 712
MspR9I	CCNGG	1 cut(s)	23
MwoI	GCNNNNNNNGC	9 cut(s)	65, 502, 527, 579, 604, 629, 676, 700, 751
NciI	CCSGG	1 cut(s)	23
NcoI	CCATGG	2 cut(s)	245, 819
NdeII	GATC	7 cut(s)	32, 40, 80, 109, 128, 136, 264
NlaIII	CATG	3 cut(s)	170, 249, 823
NlaIV	GGNNCC	4 cut(s)	82, 103, 121, 817
PdmI	GAANNNNTTC	1 cut(s)	285
PpuMI	RGGWCCY	1 cut(s)	436
Psp5II	RGGWCCY	1 cut(s)	436
PspEI	GGTNACC	1 cut(s)	323
PspN4I	GGNNCC	4 cut(s)	82, 103, 121, 817
PspPI	GGNCC	3 cut(s)	53, 429, 436
PspPPI	RGGWCCY	1 cut(s)	436
PstNI	CAGNNNCTG	8 cut(s)	477, 502, 527, 579, 604, 629, 676, 751
PsuI	RGATCY	3 cut(s)	32, 80, 128
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
SaqAI	TTAA	1 cut(s)	368
Sau3AI	GATC	7 cut(s)	32, 40, 80, 109, 128, 136, 264
Sau96I	GGNCC	3 cut(s)	53, 429, 436
ScaI	AGTACT	1 cut(s)	211
ScrFI	CCNGG	1 cut(s)	23
SetI	ASST	8 cut(s)	58, 79, 121, 159, 218, 237, 353, 441
SinI	GGWCC	3 cut(s)	53, 429, 436
SmlI	CTYRAG	1 cut(s)	440
SmoI	CTYRAG	1 cut(s)	440
Sse9I	AATT	1 cut(s)	357
SsiI	CCGC	1 cut(s)	704
StyD4I	CCNGG	1 cut(s)	21
StyI	CCWWGG	3 cut(s)	245, 432, 819
TaaI	ACNGT	2 cut(s)	209, 479
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	3 cut(s)	39, 135, 341
TasI	AATT	1 cut(s)	357
TatI	WGTACW	1 cut(s)	209
TauI	GCSGC	1 cut(s)	706
Tru1I	TTAA	1 cut(s)	368
Tru9I	TTAA	1 cut(s)	368
TscAI	CASTG	1 cut(s)	383
TspDTI	ATGAA	3 cut(s)	17, 87, 825
TspGWI	ACGGA	4 cut(s)	121, 245, 652, 702
TspRI	CASTG	1 cut(s)	383
VpaK11BI	GGWCC	3 cut(s)	53, 429, 436
XcmI	CCANNNNNNNNNTGG	1 cut(s)	401
XmnI	GAANNNNTTC	1 cut(s)	285
ZrmI	AGTACT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.