Rroxscaffold_180G00433440

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000180
OG0000483
Physical Location & Seq
Reverse (-)
391165 .. 391944
780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_180G00433440.1

Sequence Viewer

Length: 651 bp
ATGGAACCACGAACTCTGCAACTAATGGAGCTTCAAACCCAGCAACAAATGGAACTACAAGCCCAAAGAACCAGCCGAGGAGGGAGGAAGCAACCAAGCAGCCGGAGTAGTGCCAACACGCCCGTCGACCCTAATACCCGGTGGACTCCCACACCGCCTCAACTAAGAATCCTCGAGGGGCTTTACTATGACAAGGATCTCAAAAACCCAACTCCGAGCAGATTCAAGAGATCCGTCTCAATCCGAAACGTTCTCGATGAAGGTGGATCCATTGATCTAAACTTTGGTTCCATTGGTTCCATCGGTGCCGATGGATCTATCGATCTAGCTTTTGGGTCAAGCGTCGACCATAATGTTGACCCATATTCCTCTTCACCCTTCAACAATGATATCGTACTACCTCCTTCGGCACAACAGAGGACAACCTTTCATGGAACAACGAGGAGGAGATCAGCGAGGAGATCGAAACTCTTCCTCTCGTTCCCCGTGCACGATGAGGACGTCCTTGGTAACCCGAAGACTACTTCGAGGAAGGTAGCGCATACGGTTACTATTCCGGTGGCTCGGGCAGTTACAACGGTGGCTCTCAAGTCTCTCTCGAGCTCGGCCTCAACCCATTCGGAGCCGCCGACTTGGCTTAGTATAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

216

Amino Acids

23.72

Weight (kDa)

10.05

Isoelectric Point (pI)

60.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000483)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa Rorug04G0280300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 504
AbsI CCTCGAGG 1 cut(s) 173
AccB1I GGYRCC 1 cut(s) 305
AccI GTMKAC 2 cut(s) 126, 345
AciI CCGC 2 cut(s) 155, 626
AclI AACGTT 1 cut(s) 249
AclWI GGATC 5 cut(s) 204, 225, 261, 274, 322
AcyI GRCGYC 1 cut(s) 501
AfaI GTAC 1 cut(s) 396
AgsI TTSAA 3 cut(s) 35, 226, 382
AluBI AGCT 3 cut(s) 31, 329, 603
AluI AGCT 3 cut(s) 31, 329, 603
Alw21I GWGCWC 2 cut(s) 492, 605
Alw26I GTCTC 2 cut(s) 241, 597
Alw44I GTGCAC 1 cut(s) 488
AlwI GGATC 5 cut(s) 204, 225, 261, 274, 322
Ama87I CYCGRG 3 cut(s) 173, 564, 598
AoxI GGCC 1 cut(s) 606
ApaLI GTGCAC 1 cut(s) 488
ApeKI GCWGC 1 cut(s) 99
Asp700I GAANNNNTTC 1 cut(s) 470
AspLEI GCGC 1 cut(s) 541
AsuC2I CCSGG 1 cut(s) 139
AsuHPI GGTGA 1 cut(s) 366
AvaI CYCGRG 3 cut(s) 173, 564, 598
BaeGI GKGCMC 1 cut(s) 492
BamHI GGATCC 1 cut(s) 266
BanI GGYRCC 1 cut(s) 305
BanII GRGCYC 1 cut(s) 605
BbsI GAAGAC 1 cut(s) 524
Bbv12I GWGCWC 2 cut(s) 492, 605
BbvI GCAGC 1 cut(s) 111
BccI CCATC 2 cut(s) 305, 308
BcnI CCSGG 1 cut(s) 139
BcoDI GTCTC 2 cut(s) 241, 597
BfaI CTAG 1 cut(s) 326
BglI GCCNNNNNGGC 1 cut(s) 634
BisI GCNGC 2 cut(s) 100, 626
BlsI GCNGC 2 cut(s) 101, 627
Bme1390I CCNGG 1 cut(s) 139
BmeT110I CYCGRG 3 cut(s) 173, 564, 598
BmiI GGNNCC 6 cut(s) 6, 268, 289, 298, 307, 624
BmrFI CCNGG 1 cut(s) 139
BpiI GAAGAC 1 cut(s) 524
BpuEI CTTGAG 1 cut(s) 572
BpuMI CCSGG 1 cut(s) 139
Bsa29I ATCGAT 1 cut(s) 321
BsaHI GRCGYC 1 cut(s) 501
BsaJI CCNNGG 2 cut(s) 76, 505
BsaWI WCCGGW 1 cut(s) 556
BseCI ATCGAT 1 cut(s) 321
BseDI CCNNGG 2 cut(s) 76, 505
BseRI GAGGAG 4 cut(s) 93, 457, 460, 472
BseSI GKGCMC 1 cut(s) 492
BseXI GCAGC 1 cut(s) 111
BseYI CCCAGC 1 cut(s) 39
BshFI GGCC 1 cut(s) 608
BshNI GGYRCC 1 cut(s) 305
BshVI ATCGAT 1 cut(s) 321
BsiHKAI GWGCWC 2 cut(s) 492, 605
BsiHKCI CYCGRG 3 cut(s) 173, 564, 598
BsiSI CCGG 3 cut(s) 103, 139, 557
BsmAI GTCTC 2 cut(s) 241, 597
BsmBI CGTCTC 1 cut(s) 241
BsnI GGCC 1 cut(s) 608
BsoBI CYCGRG 3 cut(s) 173, 564, 598
Bsp1286I GDGCHC 2 cut(s) 492, 605
Bsp143I GATC 8 cut(s) 196, 230, 266, 274, 314, 322, 449, 461
BspACI CCGC 2 cut(s) 155, 626
BspANI GGCC 1 cut(s) 608
BspDI ATCGAT 1 cut(s) 321
BspLI GGNNCC 6 cut(s) 6, 268, 289, 298, 307, 624
BspPI GGATC 5 cut(s) 204, 225, 261, 274, 322
BspT107I GGYRCC 1 cut(s) 305
BssECI CCNNGG 2 cut(s) 76, 505
BssMI GATC 8 cut(s) 196, 230, 266, 274, 314, 322, 449, 461
BssNI GRCGYC 1 cut(s) 501
BssT1I CCWWGG 1 cut(s) 505
Bst4CI ACNGT 2 cut(s) 547, 580
Bst6I CTCTTC 2 cut(s) 376, 476
BstACI GRCGYC 1 cut(s) 501
BstDEI CTNAG 2 cut(s) 164, 638
BstEII GGTNACC 1 cut(s) 509
BstHHI GCGC 1 cut(s) 541
BstKTI GATC 8 cut(s) 199, 233, 269, 277, 317, 325, 452, 464
BstMAI GTCTC 2 cut(s) 241, 597
BstMBI GATC 8 cut(s) 196, 230, 266, 274, 314, 322, 449, 461
BstMWI GCNNNNNNNGC 1 cut(s) 634
BstPI GGTNACC 1 cut(s) 509
BstSCI CCNGG 1 cut(s) 137
BstSLI GKGCMC 1 cut(s) 492
BstV1I GCAGC 1 cut(s) 111
BstV2I GAAGAC 1 cut(s) 524
BstX2I RGATCY 4 cut(s) 196, 230, 266, 314
BstYI RGATCY 4 cut(s) 196, 230, 266, 314
Bsu15I ATCGAT 1 cut(s) 321
BsuRI GGCC 1 cut(s) 608
BsuTUI ATCGAT 1 cut(s) 321
CfoI GCGC 1 cut(s) 541
ClaI ATCGAT 1 cut(s) 321
CseI GACGC 1 cut(s) 331
Csp6I GTAC 1 cut(s) 395
CviAII CATG 1 cut(s) 431
CviQI GTAC 1 cut(s) 395
DdeI CTNAG 2 cut(s) 164, 638
DpnI GATC 8 cut(s) 198, 232, 268, 276, 316, 324, 451, 463
DpnII GATC 8 cut(s) 196, 230, 266, 274, 314, 322, 449, 461
Eam1104I CTCTTC 2 cut(s) 376, 476
EarI CTCTTC 2 cut(s) 376, 476
Ecl136II GAGCTC 1 cut(s) 603
Eco130I CCWWGG 1 cut(s) 505
Eco24I GRGCYC 1 cut(s) 605
Eco32I GATATC 1 cut(s) 391
Eco53kI GAGCTC 1 cut(s) 603
Eco88I CYCGRG 3 cut(s) 173, 564, 598
Eco91I GGTNACC 1 cut(s) 509
EcoICRI GAGCTC 1 cut(s) 603
EcoO65I GGTNACC 1 cut(s) 509
EcoRV GATATC 1 cut(s) 391
EcoT14I CCWWGG 1 cut(s) 505
EcoT38I GRGCYC 1 cut(s) 605
ErhI CCWWGG 1 cut(s) 505
Esp3I CGTCTC 1 cut(s) 241
FaeI CATG 1 cut(s) 434
FaiI YATR 7 cut(s) 189, 351, 364, 432, 543, 644, 649
FatI CATG 1 cut(s) 430
FblI GTMKAC 2 cut(s) 126, 345
Fnu4HI GCNGC 2 cut(s) 100, 626
FriOI GRGCYC 1 cut(s) 605
Fsp4HI GCNGC 2 cut(s) 100, 626
FspBI CTAG 1 cut(s) 326
GlaI GCGC 1 cut(s) 540
GluI GCNGC 2 cut(s) 100, 626
GsaI CCCAGC 1 cut(s) 43
HaeIII GGCC 1 cut(s) 608
HapII CCGG 3 cut(s) 103, 139, 557
HgaI GACGC 1 cut(s) 331
HhaI GCGC 1 cut(s) 541
Hin1I GRCGYC 1 cut(s) 501
Hin1II CATG 1 cut(s) 434
Hin6I GCGC 1 cut(s) 539
HinP1I GCGC 1 cut(s) 539
HincII GTYRAC 3 cut(s) 127, 346, 358
HindII GTYRAC 3 cut(s) 127, 346, 358
HinfI GANTC 3 cut(s) 145, 168, 222
HpaII CCGG 3 cut(s) 103, 139, 557
HphI GGTGA 1 cut(s) 366
Hpy166II GTNNAC 5 cut(s) 127, 144, 346, 358, 490
Hpy188I TCNGA 3 cut(s) 216, 245, 622
Hpy188III TCNNGA 3 cut(s) 226, 254, 598
Hpy8I GTNNAC 5 cut(s) 127, 144, 346, 358, 490
Hpy99I CGWCG 2 cut(s) 128, 347
HpyAV CCTTC 4 cut(s) 254, 388, 414, 526
HpyCH4III ACNGT 2 cut(s) 547, 580
HpyCH4IV ACGT 2 cut(s) 249, 501
HpyCH4V TGCA 2 cut(s) 19, 490
HpyF10VI GCNNNNNNNGC 1 cut(s) 634
HpyF3I CTNAG 2 cut(s) 164, 638
HpySE526I ACGT 2 cut(s) 249, 501
Hsp92I GRCGYC 1 cut(s) 501
Hsp92II CATG 1 cut(s) 434
HspAI GCGC 1 cut(s) 539
Kzo9I GATC 8 cut(s) 196, 230, 266, 274, 314, 322, 449, 461
LmnI GCTCC 2 cut(s) 28, 622
LpnPI CCDG 5 cut(s) 53, 85, 116, 152, 570
Lsp1109I GCAGC 1 cut(s) 111
MaeI CTAG 1 cut(s) 326
MaeII ACGT 2 cut(s) 249, 501
MaeIII GTNAC 3 cut(s) 509, 547, 571
MalI GATC 8 cut(s) 198, 232, 268, 276, 316, 324, 451, 463
MboI GATC 8 cut(s) 196, 230, 266, 274, 314, 322, 449, 461
MboII GAAGA 3 cut(s) 363, 463, 529
MflI RGATCY 4 cut(s) 196, 230, 266, 314
MhlI GDGCHC 2 cut(s) 492, 605
MlyI GAGTC 1 cut(s) 139
MroXI GAANNNNTTC 1 cut(s) 470
MspI CCGG 3 cut(s) 103, 139, 557
MspR9I CCNGG 1 cut(s) 139
MwoI GCNNNNNNNGC 1 cut(s) 634
NciI CCSGG 1 cut(s) 139
NdeII GATC 8 cut(s) 196, 230, 266, 274, 314, 322, 449, 461
NlaIII CATG 1 cut(s) 434
NlaIV GGNNCC 6 cut(s) 6, 268, 289, 298, 307, 624
NmeAIII GCCGAG 2 cut(s) 101, 584
PaeR7I CTCGAG 2 cut(s) 173, 598
PcsI WCGNNNNNNNCGW 2 cut(s) 498, 626
PdmI GAANNNNTTC 1 cut(s) 470
PfeI GAWTC 2 cut(s) 168, 222
PkrI GCNGC 2 cut(s) 101, 627
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
Psp124BI GAGCTC 1 cut(s) 605
Psp1406I AACGTT 1 cut(s) 249
PspEI GGTNACC 1 cut(s) 509
PspFI CCCAGC 1 cut(s) 39
PspN4I GGNNCC 6 cut(s) 6, 268, 289, 298, 307, 624
PspXI VCTCGAGB 1 cut(s) 173
PsuI RGATCY 4 cut(s) 196, 230, 266, 314
RsaI GTAC 1 cut(s) 396
RsaNI GTAC 1 cut(s) 395
SacI GAGCTC 1 cut(s) 605
SalI GTCGAC 2 cut(s) 125, 344
SatI GCNGC 2 cut(s) 100, 626
Sau3AI GATC 8 cut(s) 196, 230, 266, 274, 314, 322, 449, 461
SchI GAGTC 1 cut(s) 139
ScrFI CCNGG 1 cut(s) 139
SduI GDGCHC 2 cut(s) 492, 605
SetI ASST 9 cut(s) 33, 252, 265, 331, 403, 428, 504, 537, 605
Sfr274I CTCGAG 2 cut(s) 173, 598
SlaI CTCGAG 2 cut(s) 173, 598
SmlI CTYRAG 3 cut(s) 173, 587, 598
SmoI CTYRAG 3 cut(s) 173, 587, 598
SsiI CCGC 2 cut(s) 155, 626
SspMI CTAG 1 cut(s) 326
SstI GAGCTC 1 cut(s) 605
StyD4I CCNGG 1 cut(s) 137
StyI CCWWGG 1 cut(s) 505
TaaI ACNGT 2 cut(s) 547, 580
TaiI ACGT 2 cut(s) 252, 504
TaqI TCGA 8 cut(s) 126, 174, 255, 321, 345, 464, 527, 599
TauI GCSGC 1 cut(s) 628
TfiI GAWTC 2 cut(s) 168, 222
TseI GCWGC 1 cut(s) 99
TspDTI ATGAA 2 cut(s) 273, 419
TspGWI ACGGA 1 cut(s) 223
VneI GTGCAC 1 cut(s) 488
XhoI CTCGAG 2 cut(s) 173, 598
XmiI GTMKAC 2 cut(s) 126, 345
XmnI GAANNNNTTC 1 cut(s) 470
XspI CTAG 1 cut(s) 326
ZraI GACGTC 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.