Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000483

Physical Location & Seq

Genomic Coordinates Reverse (-)

6235850 .. 6236434

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00338020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGAAGGCAATTTGGAACGTTCGGGTTGGTGGATCTCTCGATCTCAACTTTGGACCCGCTTGTTCTACCGATGAAGGTGGATCCATTGATCTAAATTTTGGTCCCATTAATTCCACTGGTGCTGATGGATCTATCGATCTTGCTTTTGGGTCAAGTGTCAACTATCATGTTGACCCATATTCCTCTTCACCCTTCAACAATAACAACAAGTACTACCTCCTTCGGTACAACAGAGGACAACCTTCCATGGAACAACGAGGAGGTGATCAGCAGGAGATCAAAACTCTTCCTCTGTTCCCCGTGCATAGTGAGGACGTCCTTGGTAACCCGATGACTACTTCCGAGGAAGATAAAGTCGATTTTCTTGAATCGAACAATTTCGAGCTTTTTGTTAAAACGAATATTTCGAAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

138

Amino Acids

15.2

Weight (kDa)

4.55

Isoelectric Point (pI)

41.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii	Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa	Rorug04G0280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	318
AciI	CCGC	1 cut(s)	57
AclI	AACGTT	1 cut(s)	18
AclWI	GGATC	4 cut(s)	40, 75, 88, 136
AcsI	RAATTY	1 cut(s)	94
AcyI	GRCGYC	1 cut(s)	315
AfaI	GTAC	2 cut(s)	212, 227
AgsI	TTSAA	2 cut(s)	196, 368
AluBI	AGCT	1 cut(s)	385
AluI	AGCT	1 cut(s)	385
AlwI	GGATC	4 cut(s)	40, 75, 88, 136
ApoI	RAATTY	1 cut(s)	94
AseI	ATTAAT	1 cut(s)	108
Asp700I	GAANNNNTTC	1 cut(s)	377
AspS9I	GGNCC	2 cut(s)	53, 101
AsuHPI	GGTGA	2 cut(s)	180, 275
AsuII	TTCGAA	1 cut(s)	407
AvaII	GGWCC	2 cut(s)	53, 101
BamHI	GGATCC	1 cut(s)	80
BccI	CCATC	1 cut(s)	119
BclI	TGATCA	1 cut(s)	265
BmcAI	AGTACT	1 cut(s)	212
Bme18I	GGWCC	2 cut(s)	53, 101
BmgT120I	GGNCC	2 cut(s)	53, 101
BmiI	GGNNCC	3 cut(s)	55, 82, 103
Bpu14I	TTCGAA	1 cut(s)	407
Bsa29I	ATCGAT	1 cut(s)	135
BsaHI	GRCGYC	1 cut(s)	315
BsaJI	CCNNGG	3 cut(s)	246, 319, 342
Bse1I	ACTGG	1 cut(s)	121
BseCI	ATCGAT	1 cut(s)	135
BseDI	CCNNGG	3 cut(s)	246, 319, 342
BseNI	ACTGG	1 cut(s)	121
BseRI	GAGGAG	1 cut(s)	273
BshVI	ATCGAT	1 cut(s)	135
BslFI	GGGAC	1 cut(s)	87
BsmFI	GGGAC	1 cut(s)	87
Bsp119I	TTCGAA	1 cut(s)	407
Bsp143I	GATC	8 cut(s)	32, 40, 80, 88, 128, 136, 265, 276
Bsp19I	CCATGG	1 cut(s)	246
BspACI	CCGC	1 cut(s)	57
BspDI	ATCGAT	1 cut(s)	135
BspLI	GGNNCC	3 cut(s)	55, 82, 103
BspPI	GGATC	4 cut(s)	40, 75, 88, 136
BspT104I	TTCGAA	1 cut(s)	407
BsrI	ACTGG	1 cut(s)	121
BssECI	CCNNGG	3 cut(s)	246, 319, 342
BssMI	GATC	8 cut(s)	32, 40, 80, 88, 128, 136, 265, 276
BssNI	GRCGYC	1 cut(s)	315
BssT1I	CCWWGG	2 cut(s)	246, 319
Bst6I	CTCTTC	2 cut(s)	190, 291
BstACI	GRCGYC	1 cut(s)	315
BstBI	TTCGAA	1 cut(s)	407
BstDSI	CCRYGG	1 cut(s)	246
BstEII	GGTNACC	1 cut(s)	323
BstKTI	GATC	8 cut(s)	35, 43, 83, 91, 131, 139, 268, 279
BstMBI	GATC	8 cut(s)	32, 40, 80, 88, 128, 136, 265, 276
BstPI	GGTNACC	1 cut(s)	323
BstX2I	RGATCY	3 cut(s)	32, 80, 128
BstYI	RGATCY	3 cut(s)	32, 80, 128
Bsu15I	ATCGAT	1 cut(s)	135
BsuTUI	ATCGAT	1 cut(s)	135
BtgI	CCRYGG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	114
Cfr13I	GGNCC	2 cut(s)	53, 101
ClaI	ATCGAT	1 cut(s)	135
Csp6I	GTAC	2 cut(s)	211, 226
CviAII	CATG	2 cut(s)	167, 247
CviJI	RGCY	1 cut(s)	385
CviKI_1	RGCY	1 cut(s)	385
CviQI	GTAC	2 cut(s)	211, 226
DpnI	GATC	8 cut(s)	34, 42, 82, 90, 130, 138, 267, 278
DpnII	GATC	8 cut(s)	32, 40, 80, 88, 128, 136, 265, 276
Eam1104I	CTCTTC	2 cut(s)	190, 291
EarI	CTCTTC	2 cut(s)	190, 291
Eco130I	CCWWGG	2 cut(s)	246, 319
Eco47I	GGWCC	2 cut(s)	53, 101
Eco91I	GGTNACC	1 cut(s)	323
EcoO65I	GGTNACC	1 cut(s)	323
EcoT14I	CCWWGG	2 cut(s)	246, 319
ErhI	CCWWGG	2 cut(s)	246, 319
FaeI	CATG	2 cut(s)	170, 250
FaiI	YATR	4 cut(s)	168, 178, 248, 306
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	2 cut(s)	166, 246
FauI	CCCGC	1 cut(s)	64
FbaI	TGATCA	1 cut(s)	265
Hin1I	GRCGYC	1 cut(s)	315
Hin1II	CATG	2 cut(s)	170, 250
HincII	GTYRAC	2 cut(s)	160, 172
HindII	GTYRAC	2 cut(s)	160, 172
HinfI	GANTC	1 cut(s)	368
HphI	GGTGA	2 cut(s)	180, 275
Hpy166II	GTNNAC	2 cut(s)	160, 172
Hpy188I	TCNGA	1 cut(s)	343
Hpy188III	TCNNGA	2 cut(s)	38, 365
Hpy8I	GTNNAC	2 cut(s)	160, 172
HpyAV	CCTTC	4 cut(s)	68, 202, 230, 252
HpyCH4IV	ACGT	2 cut(s)	18, 315
HpyCH4V	TGCA	1 cut(s)	304
HpySE526I	ACGT	2 cut(s)	18, 315
Hsp92I	GRCGYC	1 cut(s)	315
Hsp92II	CATG	2 cut(s)	170, 250
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	8 cut(s)	32, 40, 80, 88, 128, 136, 265, 276
LpnPI	CCDG	2 cut(s)	102, 257
MaeII	ACGT	2 cut(s)	18, 315
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	8 cut(s)	34, 42, 82, 90, 130, 138, 267, 278
MboI	GATC	8 cut(s)	32, 40, 80, 88, 128, 136, 265, 276
MboII	GAAGA	3 cut(s)	177, 278, 359
MflI	RGATCY	3 cut(s)	32, 80, 128
MluCI	AATT	4 cut(s)	9, 94, 109, 376
MnlI	CCTC	8 cut(s)	193, 227, 227, 251, 254, 300, 304, 337
MroXI	GAANNNNTTC	1 cut(s)	377
MseI	TTAA	2 cut(s)	108, 393
NcoI	CCATGG	1 cut(s)	246
NdeII	GATC	8 cut(s)	32, 40, 80, 88, 128, 136, 265, 276
NlaIII	CATG	2 cut(s)	170, 250
NlaIV	GGNNCC	3 cut(s)	55, 82, 103
NspV	TTCGAA	1 cut(s)	407
PcsI	WCGNNNNNNNCGW	1 cut(s)	404
PdmI	GAANNNNTTC	1 cut(s)	377
PfeI	GAWTC	1 cut(s)	368
PshBI	ATTAAT	1 cut(s)	108
Psp1406I	AACGTT	1 cut(s)	18
PspEI	GGTNACC	1 cut(s)	323
PspN4I	GGNNCC	3 cut(s)	55, 82, 103
PspPI	GGNCC	2 cut(s)	53, 101
PsuI	RGATCY	3 cut(s)	32, 80, 128
RsaI	GTAC	2 cut(s)	212, 227
RsaNI	GTAC	2 cut(s)	211, 226
SaqAI	TTAA	2 cut(s)	108, 393
Sau3AI	GATC	8 cut(s)	32, 40, 80, 88, 128, 136, 265, 276
Sau96I	GGNCC	2 cut(s)	53, 101
ScaI	AGTACT	1 cut(s)	212
SetI	ASST	7 cut(s)	21, 79, 219, 244, 265, 318, 387
SfuI	TTCGAA	1 cut(s)	407
SinI	GGWCC	2 cut(s)	53, 101
Sse9I	AATT	4 cut(s)	9, 94, 109, 376
SsiI	CCGC	1 cut(s)	57
SspI	AATATT	1 cut(s)	403
StyI	CCWWGG	2 cut(s)	246, 319
TaiI	ACGT	2 cut(s)	21, 318
TaqI	TCGA	6 cut(s)	39, 135, 357, 371, 381, 407
TasI	AATT	4 cut(s)	9, 94, 109, 376
TatI	WGTACW	1 cut(s)	210
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	2 cut(s)	108, 393
Tru9I	TTAA	2 cut(s)	108, 393
TscAI	CASTG	1 cut(s)	121
TspDTI	ATGAA	2 cut(s)	17, 87
TspRI	CASTG	1 cut(s)	121
VpaK11BI	GGWCC	2 cut(s)	53, 101
VspI	ATTAAT	1 cut(s)	108
XapI	RAATTY	1 cut(s)	94
XmnI	GAANNNNTTC	1 cut(s)	377
ZraI	GACGTC	1 cut(s)	316
ZrmI	AGTACT	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.