Rroxscaffold_4G00316240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000483
Physical Location & Seq
Forward (+)
40916818 .. 40922637
5820 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00316240.1

Sequence Viewer

Length: 408 bp
ATGGCGGCGGTGATCCGTAAAACGAGTCGCTCTAGTACCGGAGGGATTTCTTTGCCACTGCAAACAACTCTACCATTTTCGATATTCTCGACCACGCCTTCACCGTCGCCGCCTCGATTTCCCGGAGAAGTTCACTCGCCGCAGGACTCGAATTCTCGATTCGATTCAACGTTTGGGTTCCGATATATAGGGTTTTGTGCTGGTGCCGCATCCGAAGGTACAGTGGTCCGATCCAAAGGCCGAGTAGCAGCCTTCAAAGACATCGCTCAAAATACGCATAAAGATCGTGAAGCGAAATCAGAGCATGGGATGCTCCAGAGTGTGGGACACTCCGACCCGAGCACGGGAGGCTCCCTTCTTTCGTATGGTGATACCTCTCTTCCCCATATCTTATCGTTGCTTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

14.31

Weight (kDa)

8.93

Isoelectric Point (pI)

59.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000483)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa Rorug04G0280300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 203
AccB7I CCANNNNNTGG 1 cut(s) 322
AciI CCGC 5 cut(s) 5, 8, 110, 140, 207
AclI AACGTT 1 cut(s) 170
AclWI GGATC 2 cut(s) 7, 225
AcsI RAATTY 1 cut(s) 151
AfaI GTAC 2 cut(s) 37, 220
AfiI CCNNNNNNNGG 3 cut(s) 322, 343, 344
AgsI TTSAA 2 cut(s) 168, 256
Alw21I GWGCWC 1 cut(s) 344
AlwI GGATC 2 cut(s) 7, 225
Ama87I CYCGRG 1 cut(s) 337
AoxI GGCC 1 cut(s) 238
ApeKI GCWGC 1 cut(s) 248
ApoI RAATTY 1 cut(s) 151
AspS9I GGNCC 1 cut(s) 226
AsuC2I CCSGG 1 cut(s) 123
AsuHPI GGTGA 3 cut(s) 22, 93, 380
AvaI CYCGRG 1 cut(s) 337
AvaII GGWCC 1 cut(s) 226
BaeI ACNNNNGTAYC 2 cut(s) 210, 243
BanI GGYRCC 1 cut(s) 203
Bbv12I GWGCWC 1 cut(s) 344
BbvI GCAGC 1 cut(s) 260
BcgI CGANNNNNNTGC 2 cut(s) 266, 300
BcnI CCSGG 1 cut(s) 123
BfaI CTAG 2 cut(s) 33, 406
BisI GCNGC 5 cut(s) 6, 110, 140, 207, 249
BlsI GCNGC 5 cut(s) 7, 111, 141, 208, 250
Bme1390I CCNGG 1 cut(s) 123
Bme18I GGWCC 1 cut(s) 226
BmeT110I CYCGRG 1 cut(s) 337
BmgT120I GGNCC 1 cut(s) 226
BmiI GGNNCC 3 cut(s) 179, 205, 352
BmrFI CCNGG 1 cut(s) 123
BmsI GCATC 2 cut(s) 218, 300
BpmI CTGGAG 1 cut(s) 299
BpuMI CCSGG 1 cut(s) 123
BsaWI WCCGGW 1 cut(s) 38
Bsc4I CCNNNNNNNGG 3 cut(s) 322, 343, 344
BseGI GGATG 2 cut(s) 209, 315
BseLI CCNNNNNNNGG 3 cut(s) 322, 343, 344
BseXI GCAGC 1 cut(s) 260
BshFI GGCC 1 cut(s) 240
BshNI GGYRCC 1 cut(s) 203
BsiHKAI GWGCWC 1 cut(s) 344
BsiHKCI CYCGRG 1 cut(s) 337
BsiSI CCGG 2 cut(s) 39, 123
BslFI GGGAC 1 cut(s) 339
BslI CCNNNNNNNGG 3 cut(s) 322, 343, 344
BsmFI GGGAC 1 cut(s) 339
BsnI GGCC 1 cut(s) 240
BsoBI CYCGRG 1 cut(s) 337
Bsp1286I GDGCHC 1 cut(s) 344
Bsp143I GATC 3 cut(s) 12, 230, 283
BspACI CCGC 5 cut(s) 5, 8, 110, 140, 207
BspANI GGCC 1 cut(s) 240
BspLI GGNNCC 3 cut(s) 179, 205, 352
BspPI GGATC 2 cut(s) 7, 225
BspT107I GGYRCC 1 cut(s) 203
BssMI GATC 3 cut(s) 12, 230, 283
Bst4CI ACNGT 2 cut(s) 105, 223
Bst6I CTCTTC 1 cut(s) 384
BstAPI GCANNNNNTGC 1 cut(s) 310
BstF5I GGATG 2 cut(s) 209, 315
BstKTI GATC 3 cut(s) 15, 233, 286
BstMBI GATC 3 cut(s) 12, 230, 283
BstMWI GCNNNNNNNGC 3 cut(s) 206, 310, 348
BstSCI CCNGG 1 cut(s) 121
BstV1I GCAGC 1 cut(s) 260
BsuRI GGCC 1 cut(s) 240
BtgZI GCGATG 1 cut(s) 247
BtsCI GGATG 2 cut(s) 209, 315
BtsI GCAGTG 1 cut(s) 56
BtsIMutI CAGTG 2 cut(s) 56, 228
Cfr13I GGNCC 1 cut(s) 226
Csp6I GTAC 2 cut(s) 36, 219
CviAII CATG 1 cut(s) 305
CviJI RGCY 3 cut(s) 240, 251, 351
CviKI_1 RGCY 3 cut(s) 240, 251, 351
CviQI GTAC 2 cut(s) 36, 219
DpnI GATC 3 cut(s) 14, 232, 285
DpnII GATC 3 cut(s) 12, 230, 283
Eam1104I CTCTTC 1 cut(s) 384
EarI CTCTTC 1 cut(s) 384
Eco47I GGWCC 1 cut(s) 226
Eco88I CYCGRG 1 cut(s) 337
EcoRI GAATTC 1 cut(s) 151
FaeI CATG 1 cut(s) 308
FaiI YATR 6 cut(s) 186, 188, 279, 306, 366, 387
FaqI GGGAC 1 cut(s) 339
FatI CATG 1 cut(s) 304
Fnu4HI GCNGC 5 cut(s) 6, 110, 140, 207, 249
FokI GGATG 2 cut(s) 196, 322
Fsp4HI GCNGC 5 cut(s) 6, 110, 140, 207, 249
FspBI CTAG 2 cut(s) 33, 406
GluI GCNGC 5 cut(s) 6, 110, 140, 207, 249
GsuI CTGGAG 1 cut(s) 299
HaeIII GGCC 1 cut(s) 240
HapII CCGG 2 cut(s) 39, 123
Hin1II CATG 1 cut(s) 308
HinfI GANTC 4 cut(s) 25, 146, 159, 164
HpaII CCGG 2 cut(s) 39, 123
HphI GGTGA 3 cut(s) 22, 93, 380
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 5 cut(s) 182, 214, 230, 301, 334
Hpy188III TCNNGA 4 cut(s) 88, 156, 287, 316
Hpy8I GTNNAC 1 cut(s) 133
Hpy99I CGWCG 1 cut(s) 109
HpyAV CCTTC 4 cut(s) 108, 209, 262, 365
HpyCH4III ACNGT 2 cut(s) 105, 223
HpyCH4IV ACGT 1 cut(s) 170
HpyCH4V TGCA 1 cut(s) 61
HpyF10VI GCNNNNNNNGC 3 cut(s) 206, 310, 348
HpySE526I ACGT 1 cut(s) 170
Hsp92II CATG 1 cut(s) 308
Kzo9I GATC 3 cut(s) 12, 230, 283
LmnI GCTCC 2 cut(s) 318, 356
LpnPI CCDG 5 cut(s) 52, 128, 136, 186, 329
Lsp1109I GCAGC 1 cut(s) 260
LweI GCATC 2 cut(s) 218, 300
MaeI CTAG 2 cut(s) 33, 406
MaeII ACGT 1 cut(s) 170
MalI GATC 3 cut(s) 14, 232, 285
MboI GATC 3 cut(s) 12, 230, 283
MboII GAAGA 1 cut(s) 371
MhlI GDGCHC 1 cut(s) 344
MluCI AATT 1 cut(s) 151
MlyI GAGTC 2 cut(s) 34, 140
MmeI TCCRAC 1 cut(s) 357
MnlI CCTC 4 cut(s) 35, 123, 341, 385
MspI CCGG 2 cut(s) 39, 123
MspR9I CCNGG 1 cut(s) 123
MwoI GCNNNNNNNGC 3 cut(s) 206, 310, 348
NciI CCSGG 1 cut(s) 123
NdeII GATC 3 cut(s) 12, 230, 283
NlaIII CATG 1 cut(s) 308
NlaIV GGNNCC 3 cut(s) 179, 205, 352
NmeAIII GCCGAG 1 cut(s) 266
PcsI WCGNNNNNNNCGW 2 cut(s) 86, 101
PfeI GAWTC 2 cut(s) 159, 164
PflMI CCANNNNNTGG 1 cut(s) 322
PfoI TCCNGGA 1 cut(s) 121
PkrI GCNGC 5 cut(s) 7, 111, 141, 208, 250
PleI GAGTC 2 cut(s) 33, 140
PpsI GAGTC 2 cut(s) 33, 140
Psp1406I AACGTT 1 cut(s) 170
PspN4I GGNNCC 3 cut(s) 179, 205, 352
PspPI GGNCC 1 cut(s) 226
RsaI GTAC 2 cut(s) 37, 220
RsaNI GTAC 2 cut(s) 36, 219
SatI GCNGC 5 cut(s) 6, 110, 140, 207, 249
Sau3AI GATC 3 cut(s) 12, 230, 283
Sau96I GGNCC 1 cut(s) 226
SchI GAGTC 2 cut(s) 34, 140
ScrFI CCNGG 1 cut(s) 123
SduI GDGCHC 1 cut(s) 344
SetI ASST 3 cut(s) 173, 220, 377
SfaNI GCATC 2 cut(s) 218, 300
SinI GGWCC 1 cut(s) 226
Sse9I AATT 1 cut(s) 151
SsiI CCGC 5 cut(s) 5, 8, 110, 140, 207
SspMI CTAG 2 cut(s) 33, 406
StyD4I CCNGG 1 cut(s) 121
TaaI ACNGT 2 cut(s) 105, 223
TaiI ACGT 1 cut(s) 173
TaqI TCGA 6 cut(s) 80, 89, 115, 149, 157, 162
TasI AATT 1 cut(s) 151
TauI GCSGC 4 cut(s) 8, 112, 142, 209
TfiI GAWTC 2 cut(s) 159, 164
TscAI CASTG 2 cut(s) 63, 228
TseI GCWGC 1 cut(s) 248
TspGWI ACGGA 1 cut(s) 5
TspRI CASTG 2 cut(s) 63, 228
Van91I CCANNNNNTGG 1 cut(s) 322
VpaK11BI GGWCC 1 cut(s) 226
XapI RAATTY 1 cut(s) 151
XspI CTAG 2 cut(s) 33, 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.