Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000483

Physical Location & Seq

Genomic Coordinates Forward (+)

20308247 .. 20308701

Gene Structure 455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00398420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGAAGGCAATTCGGAACGTTCGGGTTGGTGGATCTCTCGATCTCAACTTTGGACCCGCTAGTTCTACCGATGAAGGTGGAGCCATTGATCTAAACTTTGGTTCCATTAATTCCACTCGTGAGGACATTCTTGGTAACCCGAAAACTACTTCCGAGGAAGGTAGCGCATACGGTTACTATTCCGGTGGCTCGGGCAGTTACAACGCTGGCTCTCAAGTCTCTCTTGAGCTCGGCCTCAACCCATTCGGAGCCGCCGACTTGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

88

Amino Acids

8.94

Weight (kDa)

4.28

Isoelectric Point (pI)

24.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii	Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa	Rorug04G0280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	57, 252
AclI	AACGTT	1 cut(s)	18
AclWI	GGATC	1 cut(s)	40
AluBI	AGCT	1 cut(s)	229
AluI	AGCT	1 cut(s)	229
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	1 cut(s)	223
AlwI	GGATC	1 cut(s)	40
Ama87I	CYCGRG	1 cut(s)	190
AoxI	GGCC	1 cut(s)	232
AseI	ATTAAT	1 cut(s)	108
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	1 cut(s)	53
AvaI	CYCGRG	1 cut(s)	190
AvaII	GGWCC	1 cut(s)	53
BanII	GRGCYC	1 cut(s)	231
BauI	CACGAG	1 cut(s)	117
Bbv12I	GWGCWC	1 cut(s)	231
BcoDI	GTCTC	1 cut(s)	223
BfaI	CTAG	1 cut(s)	60
BglI	GCCNNNNNGGC	1 cut(s)	260
BisI	GCNGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	253
Bme18I	GGWCC	1 cut(s)	53
BmeT110I	CYCGRG	1 cut(s)	190
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	4 cut(s)	55, 82, 103, 250
BpuEI	CTTGAG	2 cut(s)	198, 245
BsaJI	CCNNGG	1 cut(s)	153
BsaWI	WCCGGW	1 cut(s)	182
BseDI	CCNNGG	1 cut(s)	153
BshFI	GGCC	1 cut(s)	234
BsiHKAI	GWGCWC	1 cut(s)	231
BsiHKCI	CYCGRG	1 cut(s)	190
BsiSI	CCGG	1 cut(s)	183
BsmAI	GTCTC	1 cut(s)	223
BsnI	GGCC	1 cut(s)	234
BsoBI	CYCGRG	1 cut(s)	190
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	3 cut(s)	32, 40, 88
BspACI	CCGC	2 cut(s)	57, 252
BspANI	GGCC	1 cut(s)	234
BspLI	GGNNCC	4 cut(s)	55, 82, 103, 250
BspPI	GGATC	1 cut(s)	40
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	3 cut(s)	32, 40, 88
BssSI	CACGAG	1 cut(s)	117
Bst2BI	CACGAG	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	173
BstC8I	GCNNGC	1 cut(s)	208
BstDEI	CTNAG	1 cut(s)	264
BstEII	GGTNACC	1 cut(s)	134
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	3 cut(s)	35, 43, 91
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	3 cut(s)	32, 40, 88
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstPI	GGTNACC	1 cut(s)	134
BstX2I	RGATCY	1 cut(s)	32
BstYI	RGATCY	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	234
Cac8I	GCNNGC	1 cut(s)	208
CfoI	GCGC	1 cut(s)	167
Cfr13I	GGNCC	1 cut(s)	53
CviJI	RGCY	7 cut(s)	83, 189, 210, 229, 234, 251, 263
CviKI_1	RGCY	7 cut(s)	83, 189, 210, 229, 234, 251, 263
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	3 cut(s)	34, 42, 90
DpnII	GATC	3 cut(s)	32, 40, 88
Ecl136II	GAGCTC	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	53
Eco53kI	GAGCTC	1 cut(s)	229
Eco88I	CYCGRG	1 cut(s)	190
Eco91I	GGTNACC	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	229
EcoO65I	GGTNACC	1 cut(s)	134
EcoT38I	GRGCYC	1 cut(s)	231
FaiI	YATR	1 cut(s)	169
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
FauI	CCCGC	1 cut(s)	64
Fnu4HI	GCNGC	1 cut(s)	252
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	252
FspBI	CTAG	1 cut(s)	60
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	1 cut(s)	252
HaeIII	GGCC	1 cut(s)	234
HapII	CCGG	1 cut(s)	183
HhaI	GCGC	1 cut(s)	167
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HpaII	CCGG	1 cut(s)	183
Hpy188I	TCNGA	3 cut(s)	15, 154, 248
Hpy188III	TCNNGA	3 cut(s)	38, 119, 224
HpyAV	CCTTC	2 cut(s)	68, 152
HpyCH4III	ACNGT	1 cut(s)	173
HpyCH4IV	ACGT	1 cut(s)	18
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	1 cut(s)	264
HpySE526I	ACGT	1 cut(s)	18
HspAI	GCGC	1 cut(s)	165
Kzo9I	GATC	3 cut(s)	32, 40, 88
LmnI	GCTCC	2 cut(s)	80, 248
LpnPI	CCDG	2 cut(s)	192, 196
MaeI	CTAG	1 cut(s)	60
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	3 cut(s)	134, 173, 197
MalI	GATC	3 cut(s)	34, 42, 90
MboI	GATC	3 cut(s)	32, 40, 88
MflI	RGATCY	1 cut(s)	32
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	2 cut(s)	9, 109
MnlI	CCTC	3 cut(s)	115, 148, 245
MseI	TTAA	1 cut(s)	108
MspI	CCGG	1 cut(s)	183
MwoI	GCNNNNNNNGC	1 cut(s)	260
NdeII	GATC	3 cut(s)	32, 40, 88
NlaIV	GGNNCC	4 cut(s)	55, 82, 103, 250
NmeAIII	GCCGAG	1 cut(s)	210
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PkrI	GCNGC	1 cut(s)	253
PshBI	ATTAAT	1 cut(s)	108
Psp124BI	GAGCTC	1 cut(s)	231
Psp1406I	AACGTT	1 cut(s)	18
PspEI	GGTNACC	1 cut(s)	134
PspN4I	GGNNCC	4 cut(s)	55, 82, 103, 250
PspPI	GGNCC	1 cut(s)	53
PsuI	RGATCY	1 cut(s)	32
SacI	GAGCTC	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	1 cut(s)	252
Sau3AI	GATC	3 cut(s)	32, 40, 88
Sau96I	GGNCC	1 cut(s)	53
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	4 cut(s)	21, 79, 163, 231
SinI	GGWCC	1 cut(s)	53
SmlI	CTYRAG	2 cut(s)	213, 224
SmoI	CTYRAG	2 cut(s)	213, 224
Sse9I	AATT	2 cut(s)	9, 109
SsiI	CCGC	2 cut(s)	57, 252
SspMI	CTAG	1 cut(s)	60
SstI	GAGCTC	1 cut(s)	231
TaaI	ACNGT	1 cut(s)	173
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	1 cut(s)	39
TasI	AATT	2 cut(s)	9, 109
TauI	GCSGC	1 cut(s)	254
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TspDTI	ATGAA	2 cut(s)	17, 87
VpaK11BI	GGWCC	1 cut(s)	53
VspI	ATTAAT	1 cut(s)	108
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.