Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000483

Physical Location & Seq

Genomic Coordinates Reverse (-)

8215044 .. 8215496

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00085920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGAACCACGAACTCTTCAACTATGGAGCCTCAAACCCGACAATAAACGGAATTTCAAGCCCGAACCAACCGGGGAGGGAGGAAGCAACCAATCGGCCGGGAGTAGTGCCAATCGCACTCGTCAGCGACCGGTACGGTGGACTCCCACACCGCCTCAACTAAGAATCCTCGAGGGCCTTTACTATGATAAGGGCTTTAAGCGTCCAACTCCCGAGCAGATTCGGGAGATGCGCCTCGGCTGGCAGATTCGGGCCGATCGAGGACAAAAACGTCTTCTTGGTTCCGAACCTCAAATCCCGAGAGAGCCAACGGTGAAGGCATTTCGGAACGTGCGGGTTGGCGGATCTCTCGATCTCAACTTTGGACCGCAAGTCCTACGGATGAAGGTGGATCCATCGATGCGAACTTTGGTCCCACTGTTCCTACGGTCTTTGATAGATCCATCGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

150

Amino Acids

17.2

Weight (kDa)

11.2

Isoelectric Point (pI)

52.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii	Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa	Rorug04G0280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	270
AbsI	CCTCGAGG	1 cut(s)	170
AciI	CCGC	4 cut(s)	152, 334, 342, 368
AclWI	GGATC	4 cut(s)	352, 386, 399, 434
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	1 cut(s)	52
AfaI	GTAC	1 cut(s)	135
AgeI	ACCGGT	1 cut(s)	130
AgsI	TTSAA	2 cut(s)	20, 58
AhdI	GACNNNNNGTC	1 cut(s)	371
AloI	GAACNNNNNNTCC	2 cut(s)	279, 311
AlwI	GGATC	4 cut(s)	352, 386, 399, 434
Ama87I	CYCGRG	3 cut(s)	170, 212, 298
AoxI	GGCC	3 cut(s)	96, 175, 252
ApoI	RAATTY	1 cut(s)	52
AsiGI	ACCGGT	1 cut(s)	130
AspLEI	GCGC	1 cut(s)	234
AspS9I	GGNCC	4 cut(s)	175, 252, 365, 412
AsuC2I	CCSGG	2 cut(s)	73, 100
AsuHPI	GGTGA	1 cut(s)	325
AvaI	CYCGRG	3 cut(s)	170, 212, 298
AvaII	GGWCC	2 cut(s)	365, 412
BamHI	GGATCC	1 cut(s)	391
BbsI	GAAGAC	1 cut(s)	266
BccI	CCATC	2 cut(s)	403, 451
BcnI	CCSGG	2 cut(s)	73, 100
BfaI	CTAG	1 cut(s)	451
Bme1390I	CCNGG	2 cut(s)	73, 100
Bme18I	GGWCC	2 cut(s)	365, 412
BmeRI	GACNNNNNGTC	1 cut(s)	371
BmeT110I	CYCGRG	3 cut(s)	170, 212, 298
BmgT120I	GGNCC	4 cut(s)	175, 252, 365, 412
BmiI	GGNNCC	5 cut(s)	6, 29, 283, 393, 414
BmrFI	CCNGG	2 cut(s)	73, 100
BmsI	GCATC	2 cut(s)	219, 390
BpiI	GAAGAC	1 cut(s)	266
BpuMI	CCSGG	2 cut(s)	73, 100
Bsa29I	ATCGAT	2 cut(s)	398, 446
BsaJI	CCNNGG	2 cut(s)	72, 235
BsaWI	WCCGGW	1 cut(s)	130
Bse118I	RCCGGY	1 cut(s)	130
BseCI	ATCGAT	2 cut(s)	398, 446
BseDI	CCNNGG	2 cut(s)	72, 235
BseGI	GGATG	1 cut(s)	387
BseX3I	CGGCCG	1 cut(s)	96
Bsh1285I	CGRYCG	3 cut(s)	99, 131, 259
BshFI	GGCC	3 cut(s)	98, 177, 254
BshTI	ACCGGT	1 cut(s)	130
BshVI	ATCGAT	2 cut(s)	398, 446
BsiEI	CGRYCG	3 cut(s)	99, 131, 259
BsiHKCI	CYCGRG	3 cut(s)	170, 212, 298
BsiSI	CCGG	3 cut(s)	72, 99, 131
BslFI	GGGAC	1 cut(s)	398
BsmFI	GGGAC	1 cut(s)	398
BsnI	GGCC	3 cut(s)	98, 177, 254
BsoBI	CYCGRG	3 cut(s)	170, 212, 298
Bsp143I	GATC	6 cut(s)	256, 344, 352, 391, 439, 447
BspACI	CCGC	4 cut(s)	152, 334, 342, 368
BspANI	GGCC	3 cut(s)	98, 177, 254
BspDI	ATCGAT	2 cut(s)	398, 446
BspLI	GGNNCC	5 cut(s)	6, 29, 283, 393, 414
BspPI	GGATC	4 cut(s)	352, 386, 399, 434
BsrFI	RCCGGY	1 cut(s)	130
BssAI	RCCGGY	1 cut(s)	130
BssECI	CCNNGG	2 cut(s)	72, 235
BssMI	GATC	6 cut(s)	256, 344, 352, 391, 439, 447
Bst4CI	ACNGT	4 cut(s)	138, 313, 420, 429
Bst6I	CTCTTC	1 cut(s)	21
BstC8I	GCNNGC	1 cut(s)	242
BstDEI	CTNAG	1 cut(s)	161
BstF5I	GGATG	1 cut(s)	387
BstHHI	GCGC	1 cut(s)	234
BstKTI	GATC	6 cut(s)	259, 347, 355, 394, 442, 450
BstMBI	GATC	6 cut(s)	256, 344, 352, 391, 439, 447
BstMCI	CGRYCG	3 cut(s)	99, 131, 259
BstSCI	CCNGG	2 cut(s)	71, 98
BstV2I	GAAGAC	1 cut(s)	266
BstX2I	RGATCY	3 cut(s)	344, 391, 439
BstYI	RGATCY	3 cut(s)	344, 391, 439
BstZI	CGGCCG	1 cut(s)	96
Bsu15I	ATCGAT	2 cut(s)	398, 446
BsuRI	GGCC	3 cut(s)	98, 177, 254
BsuTUI	ATCGAT	2 cut(s)	398, 446
BtsCI	GGATG	1 cut(s)	387
BtsIMutI	CAGTG	1 cut(s)	416
Cac8I	GCNNGC	1 cut(s)	242
CfoI	GCGC	1 cut(s)	234
Cfr10I	RCCGGY	1 cut(s)	130
Cfr13I	GGNCC	4 cut(s)	175, 252, 365, 412
ClaI	ATCGAT	2 cut(s)	398, 446
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	134
CspAI	ACCGGT	1 cut(s)	130
CviJI	RGCY	8 cut(s)	30, 61, 98, 177, 195, 240, 254, 307
CviKI_1	RGCY	8 cut(s)	30, 61, 98, 177, 195, 240, 254, 307
CviQI	GTAC	1 cut(s)	134
DdeI	CTNAG	1 cut(s)	161
DpnI	GATC	6 cut(s)	258, 346, 354, 393, 441, 449
DpnII	GATC	6 cut(s)	256, 344, 352, 391, 439, 447
DrdI	GACNNNNNNGTC	1 cut(s)	270
DriI	GACNNNNNGTC	1 cut(s)	371
DseDI	GACNNNNNNGTC	1 cut(s)	270
EaeI	YGGCCR	1 cut(s)	96
EagI	CGGCCG	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	21
Eam1105I	GACNNNNNGTC	1 cut(s)	371
EarI	CTCTTC	1 cut(s)	21
EciI	GGCGGA	1 cut(s)	357
EclXI	CGGCCG	1 cut(s)	96
Eco47I	GGWCC	2 cut(s)	365, 412
Eco52I	CGGCCG	1 cut(s)	96
Eco88I	CYCGRG	3 cut(s)	170, 212, 298
EcoO109I	RGGNCCY	1 cut(s)	175
FaiI	YATR	2 cut(s)	25, 186
FaqI	GGGAC	1 cut(s)	398
FauI	CCCGC	1 cut(s)	327
FokI	GGATG	1 cut(s)	394
FspBI	CTAG	1 cut(s)	451
GlaI	GCGC	1 cut(s)	233
HaeIII	GGCC	3 cut(s)	98, 177, 254
HapII	CCGG	3 cut(s)	72, 99, 131
HgaI	GACGC	1 cut(s)	191
HhaI	GCGC	1 cut(s)	234
Hin6I	GCGC	1 cut(s)	232
HinP1I	GCGC	1 cut(s)	232
HinfI	GANTC	4 cut(s)	142, 165, 220, 247
HpaII	CCGG	3 cut(s)	72, 99, 131
HphI	GGTGA	1 cut(s)	325
Hpy166II	GTNNAC	1 cut(s)	141
Hpy188I	TCNGA	2 cut(s)	286, 327
Hpy188III	TCNNGA	4 cut(s)	212, 224, 298, 350
Hpy8I	GTNNAC	1 cut(s)	141
HpyAV	CCTTC	2 cut(s)	310, 379
HpyCH4III	ACNGT	4 cut(s)	138, 313, 420, 429
HpyCH4IV	ACGT	2 cut(s)	271, 330
HpyF3I	CTNAG	1 cut(s)	161
HpySE526I	ACGT	2 cut(s)	271, 330
HspAI	GCGC	1 cut(s)	232
Kzo9I	GATC	6 cut(s)	256, 344, 352, 391, 439, 447
LmnI	GCTCC	1 cut(s)	27
LpnPI	CCDG	4 cut(s)	85, 112, 144, 226
LweI	GCATC	2 cut(s)	219, 390
MaeI	CTAG	1 cut(s)	451
MaeII	ACGT	2 cut(s)	271, 330
MalI	GATC	6 cut(s)	258, 346, 354, 393, 441, 449
MboI	GATC	6 cut(s)	256, 344, 352, 391, 439, 447
MboII	GAAGA	2 cut(s)	8, 266
MflI	RGATCY	3 cut(s)	344, 391, 439
MluCI	AATT	1 cut(s)	52
MlyI	GAGTC	1 cut(s)	136
MmeI	TCCRAC	1 cut(s)	230
MnlI	CCTC	9 cut(s)	41, 70, 74, 165, 166, 179, 245, 254, 300
MseI	TTAA	1 cut(s)	198
MspI	CCGG	3 cut(s)	72, 99, 131
MspR9I	CCNGG	2 cut(s)	73, 100
NciI	CCSGG	2 cut(s)	73, 100
NdeII	GATC	6 cut(s)	256, 344, 352, 391, 439, 447
NlaIV	GGNNCC	5 cut(s)	6, 29, 283, 393, 414
NmeAIII	GCCGAG	1 cut(s)	216
PaeR7I	CTCGAG	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	1 cut(s)	256
PfeI	GAWTC	3 cut(s)	165, 220, 247
PinAI	ACCGGT	1 cut(s)	130
Ple19I	CGATCG	1 cut(s)	259
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
PspN4I	GGNNCC	5 cut(s)	6, 29, 283, 393, 414
PspPI	GGNCC	4 cut(s)	175, 252, 365, 412
PspXI	VCTCGAGB	1 cut(s)	170
PsuI	RGATCY	3 cut(s)	344, 391, 439
PvuI	CGATCG	1 cut(s)	259
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
SaqAI	TTAA	1 cut(s)	198
Sau3AI	GATC	6 cut(s)	256, 344, 352, 391, 439, 447
Sau96I	GGNCC	4 cut(s)	175, 252, 365, 412
SchI	GAGTC	1 cut(s)	136
ScrFI	CCNGG	2 cut(s)	73, 100
SetI	ASST	4 cut(s)	274, 292, 333, 390
SfaNI	GCATC	2 cut(s)	219, 390
Sfr274I	CTCGAG	1 cut(s)	170
SinI	GGWCC	2 cut(s)	365, 412
SlaI	CTCGAG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	1 cut(s)	52
SsiI	CCGC	4 cut(s)	152, 334, 342, 368
SspMI	CTAG	1 cut(s)	451
StyD4I	CCNGG	2 cut(s)	71, 98
TaaI	ACNGT	4 cut(s)	138, 313, 420, 429
TaiI	ACGT	2 cut(s)	274, 333
TaqI	TCGA	5 cut(s)	171, 259, 351, 398, 446
TasI	AATT	1 cut(s)	52
TfiI	GAWTC	3 cut(s)	165, 220, 247
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TscAI	CASTG	1 cut(s)	423
TspDTI	ATGAA	1 cut(s)	398
TspGWI	ACGGA	2 cut(s)	64, 394
TspRI	CASTG	1 cut(s)	423
VpaK11BI	GGWCC	2 cut(s)	365, 412
XapI	RAATTY	1 cut(s)	52
XhoI	CTCGAG	1 cut(s)	170
XspI	CTAG	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.