Rroxscaffold_5G00359170

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000483
Physical Location & Seq
Forward (+)
39252324 .. 39267748
15425 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00359170.1

Sequence Viewer

Length: 360 bp
ATGGAGCTTCAAACTCGGCAACAAATGGAATTACAAGCTCGGCAACCAGCCGAGGAGGGAGGAAGCAACCAAGCAGCCGGGACTCTAAGGAGATCACCGATCTCTGTTTTCGCTACGAGAATTATTGATCAAGAAAGAACTGTGAGTTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTCAAACCCAAAACAAACAAAAATCGGGAACGAGGTCCTCACCTTAGGTGTCGGCGGTGGATGCATGCCGAAGACCAGGAACGAAGTCCACACCTTCGCGTCAACGTTGGGTACTCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.89

Weight (kDa)

9.16

Isoelectric Point (pI)

53.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000483)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa Rorug04G0280300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 338
AciI CCGC 1 cut(s) 294
AclI AACGTT 1 cut(s) 344
AfaI GTAC 1 cut(s) 352
AgsI TTSAA 2 cut(s) 11, 243
AjnI CCWGG 1 cut(s) 314
AluBI AGCT 2 cut(s) 7, 38
AluI AGCT 2 cut(s) 7, 38
ApeKI GCWGC 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 274
AsuC2I CCSGG 1 cut(s) 79
AsuHPI GGTGA 2 cut(s) 87, 271
AvaII GGWCC 1 cut(s) 274
AxyI CCTNAGG 1 cut(s) 283
BbsI GAAGAC 1 cut(s) 317
BbvI GCAGC 1 cut(s) 86
BciT130I CCWGG 1 cut(s) 316
BclI TGATCA 1 cut(s) 127
BcnI CCSGG 1 cut(s) 79
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme1390I CCNGG 2 cut(s) 79, 316
Bme18I GGWCC 1 cut(s) 274
BmgT120I GGNCC 1 cut(s) 274
BmrFI CCNGG 2 cut(s) 79, 316
BmsI GCATC 1 cut(s) 290
BpiI GAAGAC 1 cut(s) 317
BpuMI CCSGG 1 cut(s) 79
BsaJI CCNNGG 1 cut(s) 51
Bse21I CCTNAGG 1 cut(s) 283
BseBI CCWGG 1 cut(s) 316
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 1 cut(s) 305
BseRI GAGGAG 1 cut(s) 68
BseXI GCAGC 1 cut(s) 86
Bsh1236I CGCG 1 cut(s) 338
BsiSI CCGG 1 cut(s) 78
BslFI GGGAC 1 cut(s) 94
BsmFI GGGAC 1 cut(s) 94
Bsp143I GATC 3 cut(s) 92, 99, 127
BspACI CCGC 1 cut(s) 294
BspFNI CGCG 1 cut(s) 338
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 3 cut(s) 92, 99, 127
Bst2UI CCWGG 1 cut(s) 316
Bst4CI ACNGT 1 cut(s) 142
BstC8I GCNNGC 1 cut(s) 305
BstDEI CTNAG 2 cut(s) 86, 283
BstF5I GGATG 1 cut(s) 305
BstFNI CGCG 1 cut(s) 338
BstKTI GATC 3 cut(s) 95, 102, 130
BstMBI GATC 3 cut(s) 92, 99, 127
BstMWI GCNNNNNNNGC 1 cut(s) 300
BstNI CCWGG 1 cut(s) 316
BstNSI RCATGY 1 cut(s) 307
BstSCI CCNGG 2 cut(s) 77, 314
BstUI CGCG 1 cut(s) 338
BstV1I GCAGC 1 cut(s) 86
BstV2I GAAGAC 1 cut(s) 317
Bsu36I CCTNAGG 1 cut(s) 283
BtsCI GGATG 1 cut(s) 305
Cac8I GCNNGC 1 cut(s) 305
Cfr13I GGNCC 1 cut(s) 274
CseI GACGC 1 cut(s) 327
Csp6I GTAC 1 cut(s) 351
CviAII CATG 1 cut(s) 304
CviJI RGCY 4 cut(s) 7, 38, 50, 77
CviKI_1 RGCY 4 cut(s) 7, 38, 50, 77
CviQI GTAC 1 cut(s) 351
DdeI CTNAG 2 cut(s) 86, 283
DpnI GATC 3 cut(s) 94, 101, 129
DpnII GATC 3 cut(s) 92, 99, 127
Eco47I GGWCC 1 cut(s) 274
Eco81I CCTNAGG 1 cut(s) 283
EcoO109I RGGNCCY 1 cut(s) 274
EcoRII CCWGG 1 cut(s) 314
EcoT22I ATGCAT 1 cut(s) 305
FaeI CATG 1 cut(s) 307
FaiI YATR 2 cut(s) 305, 358
FaqI GGGAC 1 cut(s) 94
FatI CATG 1 cut(s) 303
FbaI TGATCA 1 cut(s) 127
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 1 cut(s) 312
Fsp4HI GCNGC 1 cut(s) 75
GluI GCNGC 1 cut(s) 75
HapII CCGG 1 cut(s) 78
HgaI GACGC 1 cut(s) 327
Hin1II CATG 1 cut(s) 307
HincII GTYRAC 1 cut(s) 342
HindII GTYRAC 1 cut(s) 342
HinfI GANTC 2 cut(s) 82, 239
HpaII CCGG 1 cut(s) 78
HphI GGTGA 2 cut(s) 87, 271
Hpy166II GTNNAC 2 cut(s) 328, 342
Hpy188III TCNNGA 2 cut(s) 131, 265
Hpy8I GTNNAC 2 cut(s) 328, 342
HpyAV CCTTC 1 cut(s) 343
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4IV ACGT 1 cut(s) 344
HpyCH4V TGCA 1 cut(s) 303
HpyF10VI GCNNNNNNNGC 1 cut(s) 300
HpyF3I CTNAG 2 cut(s) 86, 283
HpySE526I ACGT 1 cut(s) 344
Hsp92II CATG 1 cut(s) 307
Ksp22I TGATCA 1 cut(s) 127
Kzo9I GATC 3 cut(s) 92, 99, 127
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 4 cut(s) 60, 91, 301, 328
Lsp1109I GCAGC 1 cut(s) 86
LweI GCATC 1 cut(s) 290
MaeII ACGT 1 cut(s) 344
MalI GATC 3 cut(s) 94, 101, 129
MboI GATC 3 cut(s) 92, 99, 127
MboII GAAGA 1 cut(s) 322
MluCI AATT 2 cut(s) 29, 120
MlyI GAGTC 1 cut(s) 76
MnlI CCTC 5 cut(s) 46, 49, 53, 265, 287
Mph1103I ATGCAT 1 cut(s) 305
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 2 cut(s) 79, 316
MvaI CCWGG 1 cut(s) 316
MvnI CGCG 1 cut(s) 338
MwoI GCNNNNNNNGC 1 cut(s) 300
NciI CCSGG 1 cut(s) 79
NdeII GATC 3 cut(s) 92, 99, 127
NlaIII CATG 1 cut(s) 307
NmeAIII GCCGAG 2 cut(s) 19, 76
NsiI ATGCAT 1 cut(s) 305
NspI RCATGY 1 cut(s) 307
PaeI GCATGC 1 cut(s) 307
PfeI GAWTC 1 cut(s) 239
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
PpuMI RGGWCCY 1 cut(s) 274
Psp1406I AACGTT 1 cut(s) 344
Psp5II RGGWCCY 1 cut(s) 274
Psp6I CCWGG 1 cut(s) 314
PspGI CCWGG 1 cut(s) 314
PspPI GGNCC 1 cut(s) 274
PspPPI RGGWCCY 1 cut(s) 274
RsaI GTAC 1 cut(s) 352
RsaNI GTAC 1 cut(s) 351
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 3 cut(s) 92, 99, 127
Sau96I GGNCC 1 cut(s) 274
SchI GAGTC 1 cut(s) 76
ScrFI CCNGG 2 cut(s) 79, 316
SetI ASST 7 cut(s) 9, 40, 276, 284, 289, 335, 347
SfaNI GCATC 1 cut(s) 290
SinI GGWCC 1 cut(s) 274
SphI GCATGC 1 cut(s) 307
Sse9I AATT 2 cut(s) 29, 120
SsiI CCGC 1 cut(s) 294
StyD4I CCNGG 2 cut(s) 77, 314
TaaI ACNGT 1 cut(s) 142
TaiI ACGT 1 cut(s) 347
TasI AATT 2 cut(s) 29, 120
TfiI GAWTC 1 cut(s) 239
TseI GCWGC 1 cut(s) 74
VpaK11BI GGWCC 1 cut(s) 274
XceI RCATGY 1 cut(s) 307
Zsp2I ATGCAT 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.