Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000483

Physical Location & Seq

Genomic Coordinates Reverse (-)

5837837 .. 5838382

Gene Structure 546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00390560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGATAAGGGTTTTAAGCGTCCAACTCCGGAGCAGATTCAAGAGATCCGCCTCGCCCAAAGCAGTTTGGGCGGATCGAGGACAAGAACGTCTTCTTTTGGTTCCGAACCTCAAATCTCGAGAAAGCCGGCGGATGAAGGCAATTCGGAACGTTCGGGTTGGTGGATCTCTCGATCTCAACTTTGGACCCTCTTGTTCTATCGATGAAGGTGGATCCATTGATCTAAACTTTGGTTCCACCGATCCTACAGTGTGCGATGGATCCGTCGATTTCAATTTTGGATCATGGGTCGGCCATAGTGTTGACCCATATTCCTCTTCACCTTCCAACACTAATACCCGTACTATTTCCTTTGGCACAACAAGAGGACAACCTTTCATGGAACAACGAGGAGGAGATCGGCGGGAGATCGAAACTCTTCCTCCGTTCCCCGTGCACGGTGAGGACGTCCTTGGTAACCCGAAGACTACTTCGAGGAAGGTAGCGCATACGGTTACTATTCGGTGGCTCGGGCGTTACAACAATGGCTCTCAAGTCTCTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

181

Amino Acids

19.99

Weight (kDa)

10.18

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii	Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa	Rorug04G0280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	87
AatII	GACGTC	1 cut(s)	450
AccIII	TCCGGA	1 cut(s)	27
AciI	CCGC	4 cut(s)	48, 71, 130, 403
AclI	AACGTT	1 cut(s)	150
AclWI	GGATC	9 cut(s)	39, 81, 172, 207, 220, 236, 255, 268, 289
AcoI	YGGCCR	1 cut(s)	292
AcyI	GRCGYC	1 cut(s)	447
AfaI	GTAC	1 cut(s)	343
AfiI	CCNNNNNNNGG	1 cut(s)	437
AgsI	TTSAA	2 cut(s)	40, 274
Alw21I	GWGCWC	1 cut(s)	438
Alw26I	GTCTC	1 cut(s)	541
Alw44I	GTGCAC	1 cut(s)	434
AlwI	GGATC	9 cut(s)	39, 81, 172, 207, 220, 236, 255, 268, 289
Ama87I	CYCGRG	2 cut(s)	117, 509
Aor13HI	TCCGGA	1 cut(s)	27
AoxI	GGCC	1 cut(s)	292
ApaLI	GTGCAC	1 cut(s)	434
Asp700I	GAANNNNTTC	2 cut(s)	90, 417
AspLEI	GCGC	1 cut(s)	487
AspS9I	GGNCC	1 cut(s)	185
AsuHPI	GGTGA	2 cut(s)	312, 452
AvaI	CYCGRG	2 cut(s)	117, 509
AvaII	GGWCC	1 cut(s)	185
BaeGI	GKGCMC	1 cut(s)	438
BamHI	GGATCC	2 cut(s)	212, 260
BbsI	GAAGAC	2 cut(s)	83, 470
Bbv12I	GWGCWC	1 cut(s)	438
BccI	CCATC	1 cut(s)	251
BcoDI	GTCTC	1 cut(s)	541
BfmI	CTRYAG	1 cut(s)	246
Bme18I	GGWCC	1 cut(s)	185
BmeT110I	CYCGRG	2 cut(s)	117, 509
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	5 cut(s)	102, 187, 214, 235, 262
BpiI	GAAGAC	2 cut(s)	83, 470
BpuEI	CTTGAG	1 cut(s)	516
Bsa29I	ATCGAT	1 cut(s)	201
BsaHI	GRCGYC	1 cut(s)	447
BsaJI	CCNNGG	1 cut(s)	451
BsaWI	WCCGGW	1 cut(s)	27
BsaXI	ACNNNNNCTCC	2 cut(s)	406, 436
Bsc4I	CCNNNNNNNGG	1 cut(s)	437
Bse118I	RCCGGY	1 cut(s)	126
BseAI	TCCGGA	1 cut(s)	27
BseCI	ATCGAT	1 cut(s)	201
BseDI	CCNNGG	1 cut(s)	451
BseGI	GGATG	1 cut(s)	138
BseLI	CCNNNNNNNGG	1 cut(s)	437
BseRI	GAGGAG	2 cut(s)	405, 408
BseSI	GKGCMC	1 cut(s)	438
BshFI	GGCC	1 cut(s)	294
BshVI	ATCGAT	1 cut(s)	201
BsiHKAI	GWGCWC	1 cut(s)	438
BsiHKCI	CYCGRG	2 cut(s)	117, 509
BsiSI	CCGG	2 cut(s)	28, 127
BslI	CCNNNNNNNGG	1 cut(s)	437
BsmAI	GTCTC	1 cut(s)	541
BsnI	GGCC	1 cut(s)	294
BsoBI	CYCGRG	2 cut(s)	117, 509
Bsp1286I	GDGCHC	1 cut(s)	438
Bsp13I	TCCGGA	1 cut(s)	27
BspACI	CCGC	4 cut(s)	48, 71, 130, 403
BspANI	GGCC	1 cut(s)	294
BspDI	ATCGAT	1 cut(s)	201
BspEI	TCCGGA	1 cut(s)	27
BspLI	GGNNCC	5 cut(s)	102, 187, 214, 235, 262
BspPI	GGATC	9 cut(s)	39, 81, 172, 207, 220, 236, 255, 268, 289
BsrFI	RCCGGY	1 cut(s)	126
BssAI	RCCGGY	1 cut(s)	126
BssECI	CCNNGG	1 cut(s)	451
BssNI	GRCGYC	1 cut(s)	447
BssT1I	CCWWGG	1 cut(s)	451
Bst4CI	ACNGT	3 cut(s)	250, 440, 493
Bst6I	CTCTTC	2 cut(s)	322, 423
BstACI	GRCGYC	1 cut(s)	447
BstC8I	GCNNGC	1 cut(s)	128
BstEII	GGTNACC	1 cut(s)	455
BstF5I	GGATG	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	487
BstMAI	GTCTC	1 cut(s)	541
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstPI	GGTNACC	1 cut(s)	455
BstSFI	CTRYAG	1 cut(s)	246
BstSLI	GKGCMC	1 cut(s)	438
BstV2I	GAAGAC	2 cut(s)	83, 470
BstX2I	RGATCY	4 cut(s)	44, 164, 212, 260
BstYI	RGATCY	4 cut(s)	44, 164, 212, 260
Bsu15I	ATCGAT	1 cut(s)	201
BsuRI	GGCC	1 cut(s)	294
BsuTUI	ATCGAT	1 cut(s)	201
BtgZI	GCGATG	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	138
BtsIMutI	CAGTG	1 cut(s)	255
Cac8I	GCNNGC	1 cut(s)	128
CfoI	GCGC	1 cut(s)	487
Cfr10I	RCCGGY	1 cut(s)	126
Cfr13I	GGNCC	1 cut(s)	185
ClaI	ATCGAT	1 cut(s)	201
CseI	GACGC	1 cut(s)	7
Csp6I	GTAC	1 cut(s)	342
CviAII	CATG	2 cut(s)	285, 379
CviJI	RGCY	4 cut(s)	126, 294, 508, 528
CviKI_1	RGCY	4 cut(s)	126, 294, 508, 528
CviQI	GTAC	1 cut(s)	342
DrdI	GACNNNNNNGTC	1 cut(s)	87
DseDI	GACNNNNNNGTC	1 cut(s)	87
EaeI	YGGCCR	1 cut(s)	292
Eam1104I	CTCTTC	2 cut(s)	322, 423
EarI	CTCTTC	2 cut(s)	322, 423
EciI	GGCGGA	3 cut(s)	37, 86, 145
Eco130I	CCWWGG	1 cut(s)	451
Eco47I	GGWCC	1 cut(s)	185
Eco88I	CYCGRG	2 cut(s)	117, 509
Eco91I	GGTNACC	1 cut(s)	455
EcoO65I	GGTNACC	1 cut(s)	455
EcoT14I	CCWWGG	1 cut(s)	451
ErhI	CCWWGG	1 cut(s)	451
FaeI	CATG	2 cut(s)	288, 382
FaiI	YATR	5 cut(s)	286, 297, 310, 380, 489
FalI	AAGNNNNNCTT	3 cut(s)	75, 107, 525
FatI	CATG	2 cut(s)	284, 378
FauI	CCCGC	1 cut(s)	396
FokI	GGATG	1 cut(s)	145
GlaI	GCGC	1 cut(s)	486
HaeIII	GGCC	1 cut(s)	294
HapII	CCGG	2 cut(s)	28, 127
HgaI	GACGC	1 cut(s)	7
HhaI	GCGC	1 cut(s)	487
Hin1I	GRCGYC	1 cut(s)	447
Hin1II	CATG	2 cut(s)	288, 382
Hin6I	GCGC	1 cut(s)	485
HinP1I	GCGC	1 cut(s)	485
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	1 cut(s)	36
HpaII	CCGG	2 cut(s)	28, 127
HphI	GGTGA	2 cut(s)	312, 452
Hpy166II	GTNNAC	2 cut(s)	304, 436
Hpy188I	TCNGA	2 cut(s)	105, 147
Hpy188III	TCNNGA	5 cut(s)	28, 40, 117, 119, 170
Hpy8I	GTNNAC	2 cut(s)	304, 436
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	4 cut(s)	130, 200, 333, 472
HpyCH4III	ACNGT	3 cut(s)	250, 440, 493
HpyCH4IV	ACGT	3 cut(s)	88, 150, 447
HpyCH4V	TGCA	1 cut(s)	436
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpySE526I	ACGT	3 cut(s)	88, 150, 447
Hsp92I	GRCGYC	1 cut(s)	447
Hsp92II	CATG	2 cut(s)	288, 382
HspAI	GCGC	1 cut(s)	485
Kpn2I	TCCGGA	1 cut(s)	27
KroI	GCCGGC	1 cut(s)	126
KroNI	GCCGGC	1 cut(s)	128
LmnI	GCTCC	1 cut(s)	30
LpnPI	CCDG	2 cut(s)	41, 140
MaeII	ACGT	3 cut(s)	88, 150, 447
MaeIII	GTNAC	3 cut(s)	455, 493, 515
MboII	GAAGA	4 cut(s)	83, 309, 410, 475
MflI	RGATCY	4 cut(s)	44, 164, 212, 260
MhlI	GDGCHC	1 cut(s)	438
MluCI	AATT	2 cut(s)	141, 274
MmeI	TCCRAC	2 cut(s)	46, 351
MroI	TCCGGA	1 cut(s)	27
MroNI	GCCGGC	1 cut(s)	126
MroXI	GAANNNNTTC	2 cut(s)	90, 417
MseI	TTAA	1 cut(s)	14
MspI	CCGG	2 cut(s)	28, 127
MwoI	GCNNNNNNNGC	1 cut(s)	68
NaeI	GCCGGC	1 cut(s)	128
NgoMIV	GCCGGC	1 cut(s)	126
NlaIII	CATG	2 cut(s)	288, 382
NlaIV	GGNNCC	5 cut(s)	102, 187, 214, 235, 262
PaeR7I	CTCGAG	1 cut(s)	117
PcsI	WCGNNNNNNNCGW	1 cut(s)	444
PdiI	GCCGGC	1 cut(s)	128
PdmI	GAANNNNTTC	2 cut(s)	90, 417
PfeI	GAWTC	1 cut(s)	36
Psp1406I	AACGTT	1 cut(s)	150
PspEI	GGTNACC	1 cut(s)	455
PspN4I	GGNNCC	5 cut(s)	102, 187, 214, 235, 262
PspPI	GGNCC	1 cut(s)	185
PsuI	RGATCY	4 cut(s)	44, 164, 212, 260
RsaI	GTAC	1 cut(s)	343
RsaNI	GTAC	1 cut(s)	342
SaqAI	TTAA	1 cut(s)	14
Sau96I	GGNCC	1 cut(s)	185
SduI	GDGCHC	1 cut(s)	438
SetI	ASST	8 cut(s)	91, 111, 153, 211, 325, 376, 450, 483
SfcI	CTRYAG	1 cut(s)	246
Sfr274I	CTCGAG	1 cut(s)	117
SinI	GGWCC	1 cut(s)	185
SlaI	CTCGAG	1 cut(s)	117
SmlI	CTYRAG	2 cut(s)	117, 531
SmoI	CTYRAG	2 cut(s)	117, 531
Sse9I	AATT	2 cut(s)	141, 274
SsiI	CCGC	4 cut(s)	48, 71, 130, 403
StyI	CCWWGG	1 cut(s)	451
TaaI	ACNGT	3 cut(s)	250, 440, 493
TaiI	ACGT	3 cut(s)	91, 153, 450
TaqI	TCGA	7 cut(s)	76, 118, 171, 201, 267, 411, 473
TasI	AATT	2 cut(s)	141, 274
TfiI	GAWTC	1 cut(s)	36
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
TscAI	CASTG	1 cut(s)	255
TspDTI	ATGAA	3 cut(s)	149, 219, 367
TspGWI	ACGGA	2 cut(s)	253, 414
TspRI	CASTG	1 cut(s)	255
VneI	GTGCAC	1 cut(s)	434
VpaK11BI	GGWCC	1 cut(s)	185
XhoI	CTCGAG	1 cut(s)	117
XmnI	GAANNNNTTC	2 cut(s)	90, 417
ZraI	GACGTC	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.