Rroxscaffold_7G00202460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000483
Physical Location & Seq
Forward (+)
50528380 .. 50537993
9614 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00202460.1

Sequence Viewer

Length: 387 bp
ATGGGCTATACCGCGCTTCGTGGAGGCAACGGGAGGGCCCGCAATGACCGGAACCTCAAATCTCGAGAAAGCCGGCGGATGAAGGCAATTCGGAACGTTCGGGTTAGTGGATCACTCGATCTCAACTTTGGACCCGCTTGTTCTGCGATGAAGAACAGATTTCCACGATCAAATGAACCTATTTTGACATATGAGTTTTCCATCTTCAAGGAATTAACAATGTCCATTCGAACCTTTTCGATAGCGATTGCGGTTAAGCCAATAAATGGGACACCAACAAGAATGCCACATAACTTGTCCAATTGCTTGTATTCCACCCGAACTCATGGCCCCGCTCTGCTATGCGGTGTGCATCATCAACGACAACAAGCAGATCCCGGCCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.3

Weight (kDa)

11.09

Isoelectric Point (pI)

39.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000483)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa Rorug04G0280300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 266
AccBSI CCGCTC 1 cut(s) 335
AccII CGCG 1 cut(s) 14
AciI CCGC 7 cut(s) 12, 40, 76, 135, 251, 333, 345
AclI AACGTT 1 cut(s) 96
AclWI GGATC 2 cut(s) 118, 368
AfiI CCNNNNNNNGG 1 cut(s) 266
AgsI TTSAA 1 cut(s) 208
AlwI GGATC 2 cut(s) 118, 368
Ama87I CYCGRG 1 cut(s) 63
AoxI GGCC 3 cut(s) 36, 328, 379
ApaI GGGCCC 1 cut(s) 40
Asp700I GAANNNNTTC 1 cut(s) 235
AspLEI GCGC 1 cut(s) 16
AspS9I GGNCC 5 cut(s) 36, 37, 131, 329, 380
AsuC2I CCSGG 1 cut(s) 378
AsuII TTCGAA 1 cut(s) 229
AvaI CYCGRG 1 cut(s) 63
AvaII GGWCC 1 cut(s) 131
BaeGI GKGCMC 1 cut(s) 40
BanII GRGCYC 1 cut(s) 40
BccI CCATC 1 cut(s) 209
BcnI CCSGG 1 cut(s) 378
Bme1390I CCNGG 1 cut(s) 378
Bme18I GGWCC 1 cut(s) 131
BmeT110I CYCGRG 1 cut(s) 63
BmgT120I GGNCC 5 cut(s) 36, 37, 131, 329, 380
BmiI GGNNCC 4 cut(s) 38, 53, 133, 331
BmrFI CCNGG 1 cut(s) 378
BmsI GCATC 1 cut(s) 361
Bpu14I TTCGAA 1 cut(s) 229
BpuMI CCSGG 1 cut(s) 378
BsaWI WCCGGW 1 cut(s) 48
Bsc4I CCNNNNNNNGG 1 cut(s) 266
Bse118I RCCGGY 1 cut(s) 72
Bse3DI GCAATG 1 cut(s) 49
BseGI GGATG 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 266
BseMI GCAATG 1 cut(s) 49
BseSI GKGCMC 1 cut(s) 40
Bsh1236I CGCG 1 cut(s) 14
BshFI GGCC 3 cut(s) 38, 330, 381
BsiHKCI CYCGRG 1 cut(s) 63
BsiSI CCGG 3 cut(s) 49, 73, 378
BslFI GGGAC 1 cut(s) 283
BslI CCNNNNNNNGG 1 cut(s) 266
BsmFI GGGAC 1 cut(s) 283
BsmI GAATGC 1 cut(s) 288
BsnI GGCC 3 cut(s) 38, 330, 381
BsoBI CYCGRG 1 cut(s) 63
Bsp119I TTCGAA 1 cut(s) 229
Bsp120I GGGCCC 1 cut(s) 36
Bsp1286I GDGCHC 1 cut(s) 40
Bsp143I GATC 4 cut(s) 110, 118, 167, 373
BspACI CCGC 7 cut(s) 12, 40, 76, 135, 251, 333, 345
BspANI GGCC 3 cut(s) 38, 330, 381
BspFNI CGCG 1 cut(s) 14
BspLI GGNNCC 4 cut(s) 38, 53, 133, 331
BspPI GGATC 2 cut(s) 118, 368
BspT104I TTCGAA 1 cut(s) 229
BsrBI CCGCTC 1 cut(s) 335
BsrDI GCAATG 1 cut(s) 49
BsrFI RCCGGY 1 cut(s) 72
BssAI RCCGGY 1 cut(s) 72
BssMI GATC 4 cut(s) 110, 118, 167, 373
BstBI TTCGAA 1 cut(s) 229
BstC8I GCNNGC 2 cut(s) 40, 74
BstDEI CTNAG 1 cut(s) 384
BstF5I GGATG 1 cut(s) 84
BstFNI CGCG 1 cut(s) 14
BstHHI GCGC 1 cut(s) 16
BstKTI GATC 4 cut(s) 113, 121, 170, 376
BstMBI GATC 4 cut(s) 110, 118, 167, 373
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 376
BstSLI GKGCMC 1 cut(s) 40
BstUI CGCG 1 cut(s) 14
BstX2I RGATCY 1 cut(s) 373
BstYI RGATCY 1 cut(s) 373
BsuRI GGCC 3 cut(s) 38, 330, 381
BtgZI GCGATG 1 cut(s) 161
BtsCI GGATG 1 cut(s) 84
Cac8I GCNNGC 2 cut(s) 40, 74
CfoI GCGC 1 cut(s) 16
Cfr10I RCCGGY 1 cut(s) 72
Cfr13I GGNCC 5 cut(s) 36, 37, 131, 329, 380
CspCI CAANNNNNGTGG 2 cut(s) 276, 311
CviAII CATG 1 cut(s) 326
CviJI RGCY 6 cut(s) 6, 38, 72, 259, 330, 381
CviKI_1 RGCY 6 cut(s) 6, 38, 72, 259, 330, 381
DdeI CTNAG 1 cut(s) 384
DpnI GATC 4 cut(s) 112, 120, 169, 375
DpnII GATC 4 cut(s) 110, 118, 167, 373
EciI GGCGGA 1 cut(s) 91
Eco24I GRGCYC 1 cut(s) 40
Eco47I GGWCC 1 cut(s) 131
Eco88I CYCGRG 1 cut(s) 63
EcoO109I RGGNCCY 1 cut(s) 36
EcoT38I GRGCYC 1 cut(s) 40
FaeI CATG 1 cut(s) 329
FaiI YATR 6 cut(s) 9, 190, 192, 291, 327, 343
FaqI GGGAC 1 cut(s) 283
FatI CATG 1 cut(s) 325
FauI CCCGC 3 cut(s) 47, 142, 340
FauNDI CATATG 1 cut(s) 190
FokI GGATG 1 cut(s) 91
FriOI GRGCYC 1 cut(s) 40
GlaI GCGC 1 cut(s) 15
HaeIII GGCC 3 cut(s) 38, 330, 381
HapII CCGG 3 cut(s) 49, 73, 378
HhaI GCGC 1 cut(s) 16
Hin1II CATG 1 cut(s) 329
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HpaII CCGG 3 cut(s) 49, 73, 378
Hpy188I TCNGA 1 cut(s) 93
Hpy188III TCNNGA 2 cut(s) 63, 65
HpyAV CCTTC 1 cut(s) 76
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 1 cut(s) 352
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HpyF3I CTNAG 1 cut(s) 384
HpySE526I ACGT 1 cut(s) 96
Hsp92II CATG 1 cut(s) 329
HspAI GCGC 1 cut(s) 14
KroI GCCGGC 1 cut(s) 72
KroNI GCCGGC 1 cut(s) 74
Kzo9I GATC 4 cut(s) 110, 118, 167, 373
LpnPI CCDG 2 cut(s) 62, 86
LweI GCATC 1 cut(s) 361
MaeII ACGT 1 cut(s) 96
MalI GATC 4 cut(s) 112, 120, 169, 375
MbiI CCGCTC 1 cut(s) 335
MboI GATC 4 cut(s) 110, 118, 167, 373
MboII GAAGA 2 cut(s) 163, 196
MfeI CAATTG 1 cut(s) 301
MflI RGATCY 1 cut(s) 373
MhlI GDGCHC 1 cut(s) 40
MluCI AATT 3 cut(s) 87, 212, 301
MnlI CCTC 3 cut(s) 17, 27, 65
MroNI GCCGGC 1 cut(s) 72
MroXI GAANNNNTTC 1 cut(s) 235
MseI TTAA 2 cut(s) 215, 255
MspI CCGG 3 cut(s) 49, 73, 378
MspR9I CCNGG 1 cut(s) 378
MunI CAATTG 1 cut(s) 301
Mva1269I GAATGC 1 cut(s) 288
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 1 cut(s) 143
NaeI GCCGGC 1 cut(s) 74
NciI CCSGG 1 cut(s) 378
NdeI CATATG 1 cut(s) 190
NdeII GATC 4 cut(s) 110, 118, 167, 373
NgoMIV GCCGGC 1 cut(s) 72
NlaIII CATG 1 cut(s) 329
NlaIV GGNNCC 4 cut(s) 38, 53, 133, 331
NspV TTCGAA 1 cut(s) 229
PaeR7I CTCGAG 1 cut(s) 63
PctI GAATGC 1 cut(s) 288
PdiI GCCGGC 1 cut(s) 74
PdmI GAANNNNTTC 1 cut(s) 235
PflMI CCANNNNNTGG 1 cut(s) 266
Psp1406I AACGTT 1 cut(s) 96
PspN4I GGNNCC 4 cut(s) 38, 53, 133, 331
PspOMI GGGCCC 1 cut(s) 36
PspPI GGNCC 5 cut(s) 36, 37, 131, 329, 380
PsuI RGATCY 1 cut(s) 373
SaqAI TTAA 2 cut(s) 215, 255
Sau3AI GATC 4 cut(s) 110, 118, 167, 373
Sau96I GGNCC 5 cut(s) 36, 37, 131, 329, 380
ScrFI CCNGG 1 cut(s) 378
SduI GDGCHC 1 cut(s) 40
SetI ASST 4 cut(s) 57, 99, 181, 236
SfaNI GCATC 1 cut(s) 361
Sfr274I CTCGAG 1 cut(s) 63
SfuI TTCGAA 1 cut(s) 229
SinI GGWCC 1 cut(s) 131
SlaI CTCGAG 1 cut(s) 63
SmlI CTYRAG 1 cut(s) 63
SmoI CTYRAG 1 cut(s) 63
Sse9I AATT 3 cut(s) 87, 212, 301
SsiI CCGC 7 cut(s) 12, 40, 76, 135, 251, 333, 345
StyD4I CCNGG 1 cut(s) 376
TaiI ACGT 1 cut(s) 99
TaqI TCGA 4 cut(s) 64, 117, 229, 239
TasI AATT 3 cut(s) 87, 212, 301
Tru1I TTAA 2 cut(s) 215, 255
Tru9I TTAA 2 cut(s) 215, 255
TspDTI ATGAA 3 cut(s) 95, 164, 189
Van91I CCANNNNNTGG 1 cut(s) 266
VpaK11BI GGWCC 1 cut(s) 131
XhoI CTCGAG 1 cut(s) 63
XmnI GAANNNNTTC 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.