Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000483

Physical Location & Seq

Genomic Coordinates Reverse (-)

52603409 .. 52603762

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00322370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAAGGCATTTCGGAAAGTCCGGGTTGGCGGATCTCTCGACCTCAACTTTGGACCCGCAAGTTCGGCGGATGAAGGTGGATCCATTGCTCCGAACTTTGGTTCCACCGATCCAATAGGTGCCGATAGATCCGTCGATCTATCTTTTGGGTCAAACGTCAACTATCATGTTGACCCATATTCCACTTCACCTTTCAACAACAACAACAAGTACTACCTCATTCGGCACAACAGAGGTCAACCATCCATGGAACAAAGAGGAGGAGATCGGCAGGAGATCGAAACTCTTCCTCTGTTCCCCGTGCATAGGGAGGACATCTTTGGTAACCCGATGACTACTTCGAGAGGAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

117

Amino Acids

12.91

Weight (kDa)

6.83

Isoelectric Point (pI)

42.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii	Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa	Rorug04G0280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	119
AciI	CCGC	3 cut(s)	30, 57, 68
AclWI	GGATC	5 cut(s)	40, 75, 88, 104, 123
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	2 cut(s)	98, 306
AgsI	TTSAA	1 cut(s)	196
AloI	GAACNNNNNNTCC	2 cut(s)	86, 118
AlwI	GGATC	5 cut(s)	40, 75, 88, 104, 123
ArsI	GACNNNNNNTTYG	2 cut(s)	32, 64
Asp700I	GAANNNNTTC	1 cut(s)	285
AspS9I	GGNCC	1 cut(s)	53
AsuC2I	CCSGG	1 cut(s)	23
AsuHPI	GGTGA	1 cut(s)	180
AvaII	GGWCC	1 cut(s)	53
BamHI	GGATCC	1 cut(s)	80
BanI	GGYRCC	1 cut(s)	119
BccI	CCATC	1 cut(s)	250
BcnI	CCSGG	1 cut(s)	23
BmcAI	AGTACT	1 cut(s)	212
Bme1390I	CCNGG	1 cut(s)	23
Bme18I	GGWCC	1 cut(s)	53
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	4 cut(s)	55, 82, 103, 121
BmrFI	CCNGG	1 cut(s)	23
BpuMI	CCSGG	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	246
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 306
Bse3DI	GCAATG	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	246
BseGI	GGATG	2 cut(s)	76, 242
BseLI	CCNNNNNNNGG	2 cut(s)	98, 306
BseMI	GCAATG	1 cut(s)	84
BseRI	GAGGAG	2 cut(s)	273, 276
BshNI	GGYRCC	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	22
BslI	CCNNNNNNNGG	2 cut(s)	98, 306
Bsp143I	GATC	7 cut(s)	32, 80, 109, 128, 136, 265, 276
Bsp19I	CCATGG	1 cut(s)	246
BspACI	CCGC	3 cut(s)	30, 57, 68
BspLI	GGNNCC	4 cut(s)	55, 82, 103, 121
BspPI	GGATC	5 cut(s)	40, 75, 88, 104, 123
BspT107I	GGYRCC	1 cut(s)	119
BsrDI	GCAATG	1 cut(s)	84
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	7 cut(s)	32, 80, 109, 128, 136, 265, 276
BssT1I	CCWWGG	1 cut(s)	246
Bst6I	CTCTTC	1 cut(s)	291
BstDSI	CCRYGG	1 cut(s)	246
BstEII	GGTNACC	1 cut(s)	323
BstF5I	GGATG	2 cut(s)	76, 242
BstKTI	GATC	7 cut(s)	35, 83, 112, 131, 139, 268, 279
BstMBI	GATC	7 cut(s)	32, 80, 109, 128, 136, 265, 276
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstPI	GGTNACC	1 cut(s)	323
BstSCI	CCNGG	1 cut(s)	21
BstX2I	RGATCY	3 cut(s)	32, 80, 128
BstYI	RGATCY	3 cut(s)	32, 80, 128
BtgI	CCRYGG	1 cut(s)	246
BtsCI	GGATG	2 cut(s)	76, 242
Cfr13I	GGNCC	1 cut(s)	53
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	2 cut(s)	167, 247
CviQI	GTAC	1 cut(s)	211
DpnI	GATC	7 cut(s)	34, 82, 111, 130, 138, 267, 278
DpnII	GATC	7 cut(s)	32, 80, 109, 128, 136, 265, 276
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
EciI	GGCGGA	2 cut(s)	45, 83
Eco130I	CCWWGG	1 cut(s)	246
Eco47I	GGWCC	1 cut(s)	53
Eco91I	GGTNACC	1 cut(s)	323
EcoO65I	GGTNACC	1 cut(s)	323
EcoT14I	CCWWGG	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	2 cut(s)	170, 250
FaiI	YATR	4 cut(s)	168, 178, 248, 306
FatI	CATG	2 cut(s)	166, 246
FauI	CCCGC	1 cut(s)	64
FokI	GGATG	2 cut(s)	83, 229
HapII	CCGG	1 cut(s)	22
Hin1II	CATG	2 cut(s)	170, 250
HincII	GTYRAC	3 cut(s)	160, 172, 239
HindII	GTYRAC	3 cut(s)	160, 172, 239
HpaII	CCGG	1 cut(s)	22
HphI	GGTGA	1 cut(s)	180
Hpy166II	GTNNAC	3 cut(s)	160, 172, 239
Hpy188I	TCNGA	2 cut(s)	15, 93
Hpy188III	TCNNGA	2 cut(s)	38, 342
Hpy8I	GTNNAC	3 cut(s)	160, 172, 239
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	2 cut(s)	68, 342
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	1 cut(s)	304
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpySE526I	ACGT	1 cut(s)	156
Hsp92II	CATG	2 cut(s)	170, 250
Kzo9I	GATC	7 cut(s)	32, 80, 109, 128, 136, 265, 276
LmnI	GCTCC	1 cut(s)	94
LpnPI	CCDG	2 cut(s)	35, 257
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	7 cut(s)	34, 82, 111, 130, 138, 267, 278
MboI	GATC	7 cut(s)	32, 80, 109, 128, 136, 265, 276
MboII	GAAGA	1 cut(s)	278
MflI	RGATCY	3 cut(s)	32, 80, 128
MnlI	CCTC	8 cut(s)	53, 227, 227, 251, 254, 300, 304, 338
MroXI	GAANNNNTTC	1 cut(s)	285
MspI	CCGG	1 cut(s)	22
MspR9I	CCNGG	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	65
NciI	CCSGG	1 cut(s)	23
NcoI	CCATGG	1 cut(s)	246
NdeII	GATC	7 cut(s)	32, 80, 109, 128, 136, 265, 276
NlaIII	CATG	2 cut(s)	170, 250
NlaIV	GGNNCC	4 cut(s)	55, 82, 103, 121
PdmI	GAANNNNTTC	1 cut(s)	285
PspEI	GGTNACC	1 cut(s)	323
PspN4I	GGNNCC	4 cut(s)	55, 82, 103, 121
PspPI	GGNCC	1 cut(s)	53
PsuI	RGATCY	3 cut(s)	32, 80, 128
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
Sau3AI	GATC	7 cut(s)	32, 80, 109, 128, 136, 265, 276
Sau96I	GGNCC	1 cut(s)	53
ScaI	AGTACT	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	23
SetI	ASST	8 cut(s)	45, 79, 121, 159, 193, 219, 238, 353
SinI	GGWCC	1 cut(s)	53
SsiI	CCGC	3 cut(s)	30, 57, 68
StyD4I	CCNGG	1 cut(s)	21
StyI	CCWWGG	1 cut(s)	246
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	4 cut(s)	39, 135, 279, 341
TatI	WGTACW	1 cut(s)	210
TspDTI	ATGAA	2 cut(s)	17, 87
TspGWI	ACGGA	1 cut(s)	121
VpaK11BI	GGWCC	1 cut(s)	53
XmnI	GAANNNNTTC	1 cut(s)	285
ZrmI	AGTACT	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.