Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000159

Orthogroup ID

OG0000483

Physical Location & Seq

Genomic Coordinates Forward (+)

880934 .. 881655

Gene Structure 722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_159G00433130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGAATTACAAGCCCGGCAACCAGCCGAGGAGGAAGGAAGCAACCAAGCGGCGGGGAGTAGTGCCAATACGCCCGTCGGGCAGCCTAATACCCGGTGGACTCCCACACCACCTCAACTAAGAATCCTCAAGGGCCTTTACTATGATAAGGGTTTTAAGCGCCCAACTCCGGAGCGATTCAAGAGATCTGTCTCAATGCGAAACAATATGGGCGGATCGAGGACAAGAACGTCTTCTTTTGGTTCCGAACCTCAAATCTCGAGAGAGCCGACGGATGAAGGCAATTCGGAATGTTCGGGACAACCTTTCATGGAACAACGAGGAGGAGATCAGCAGGAGATCGAAACTCTTCCTCTGTTCCCCGTGCATAGTGAGGACGTTCTTGGTAACCCGAAAACTACTTCCGAGGAAGGTAGCGCATACGGTTACCATTCGGTGGCTCGGGCAATTACAACAATGGCTCTCAAGTCTCTCTTGAGCTCGGTCTCAACCCATTCGGAGCCGCCGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

170

Amino Acids

18.59

Weight (kDa)

5.95

Isoelectric Point (pI)

68.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii	Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa	Rorug04G0280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	229
AccB7I	CCANNNNNTGG	1 cut(s)	436
AccIII	TCCGGA	1 cut(s)	169
AciI	CCGC	4 cut(s)	50, 53, 213, 503
AclWI	GGATC	1 cut(s)	223
AfiI	CCNNNNNNNGG	3 cut(s)	52, 169, 436
AgsI	TTSAA	1 cut(s)	181
AluBI	AGCT	1 cut(s)	480
AluI	AGCT	1 cut(s)	480
Alw21I	GWGCWC	1 cut(s)	482
Alw26I	GTCTC	3 cut(s)	196, 474, 490
AlwI	GGATC	1 cut(s)	223
Ama87I	CYCGRG	2 cut(s)	259, 441
Aor13HI	TCCGGA	1 cut(s)	169
AoxI	GGCC	1 cut(s)	133
ApeKI	GCWGC	1 cut(s)	82
Asp700I	GAANNNNTTC	2 cut(s)	232, 348
AspLEI	GCGC	2 cut(s)	162, 419
AspS9I	GGNCC	1 cut(s)	133
AsuC2I	CCSGG	2 cut(s)	16, 94
AvaI	CYCGRG	2 cut(s)	259, 441
BanII	GRGCYC	1 cut(s)	482
BbsI	GAAGAC	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	482
BbvI	GCAGC	1 cut(s)	94
BcnI	CCSGG	2 cut(s)	16, 94
BcoDI	GTCTC	3 cut(s)	196, 474, 490
BfoI	RGCGCY	1 cut(s)	163
BglI	GCCNNNNNGGC	1 cut(s)	79
BglII	AGATCT	1 cut(s)	185
BisI	GCNGC	3 cut(s)	51, 83, 503
BlsI	GCNGC	3 cut(s)	52, 84, 504
Bme1390I	CCNGG	2 cut(s)	16, 94
BmeT110I	CYCGRG	2 cut(s)	259, 441
BmgT120I	GGNCC	1 cut(s)	133
BmiI	GGNNCC	2 cut(s)	244, 501
BmrFI	CCNGG	2 cut(s)	16, 94
BpiI	GAAGAC	1 cut(s)	225
BpuEI	CTTGAG	3 cut(s)	113, 449, 496
BpuMI	CCSGG	2 cut(s)	16, 94
BsaI	GGTCTC	1 cut(s)	490
BsaJI	CCNNGG	2 cut(s)	27, 405
BsaWI	WCCGGW	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 169, 436
BseAI	TCCGGA	1 cut(s)	169
BseDI	CCNNGG	2 cut(s)	27, 405
BseGI	GGATG	1 cut(s)	280
BseLI	CCNNNNNNNGG	3 cut(s)	52, 169, 436
BseRI	GAGGAG	3 cut(s)	44, 336, 339
BseXI	GCAGC	1 cut(s)	94
BshFI	GGCC	1 cut(s)	135
BsiHKAI	GWGCWC	1 cut(s)	482
BsiHKCI	CYCGRG	2 cut(s)	259, 441
BsiSI	CCGG	3 cut(s)	16, 94, 170
BslFI	GGGAC	1 cut(s)	312
BslI	CCNNNNNNNGG	3 cut(s)	52, 169, 436
BsmAI	GTCTC	3 cut(s)	196, 474, 490
BsmFI	GGGAC	1 cut(s)	312
BsnI	GGCC	1 cut(s)	135
Bso31I	GGTCTC	1 cut(s)	490
BsoBI	CYCGRG	2 cut(s)	259, 441
Bsp1286I	GDGCHC	1 cut(s)	482
Bsp13I	TCCGGA	1 cut(s)	169
Bsp143I	GATC	4 cut(s)	185, 215, 328, 339
BspACI	CCGC	4 cut(s)	50, 53, 213, 503
BspANI	GGCC	1 cut(s)	135
BspEI	TCCGGA	1 cut(s)	169
BspLI	GGNNCC	2 cut(s)	244, 501
BspPI	GGATC	1 cut(s)	223
BspTNI	GGTCTC	1 cut(s)	490
BssECI	CCNNGG	2 cut(s)	27, 405
BssMI	GATC	4 cut(s)	185, 215, 328, 339
Bst4CI	ACNGT	1 cut(s)	425
Bst6I	CTCTTC	1 cut(s)	354
BstDEI	CTNAG	2 cut(s)	119, 510
BstEII	GGTNACC	2 cut(s)	386, 425
BstF5I	GGATG	1 cut(s)	280
BstH2I	RGCGCY	1 cut(s)	163
BstHHI	GCGC	2 cut(s)	162, 419
BstKTI	GATC	4 cut(s)	188, 218, 331, 342
BstMAI	GTCTC	3 cut(s)	196, 474, 490
BstMBI	GATC	4 cut(s)	185, 215, 328, 339
BstMWI	GCNNNNNNNGC	1 cut(s)	79
BstPI	GGTNACC	2 cut(s)	386, 425
BstSCI	CCNGG	2 cut(s)	14, 92
BstV1I	GCAGC	1 cut(s)	94
BstV2I	GAAGAC	1 cut(s)	225
BstX2I	RGATCY	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	185
BsuRI	GGCC	1 cut(s)	135
BtsCI	GGATG	1 cut(s)	280
CfoI	GCGC	2 cut(s)	162, 419
Cfr13I	GGNCC	1 cut(s)	133
CviAII	CATG	1 cut(s)	310
CviJI	RGCY	9 cut(s)	14, 26, 85, 135, 268, 440, 461, 480, 502
CviKI_1	RGCY	9 cut(s)	14, 26, 85, 135, 268, 440, 461, 480, 502
DdeI	CTNAG	2 cut(s)	119, 510
DpnI	GATC	4 cut(s)	187, 217, 330, 341
DpnII	GATC	4 cut(s)	185, 215, 328, 339
DrdI	GACNNNNNNGTC	1 cut(s)	229
DseDI	GACNNNNNNGTC	1 cut(s)	229
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
EciI	GGCGGA	1 cut(s)	228
Ecl136II	GAGCTC	1 cut(s)	480
Eco24I	GRGCYC	1 cut(s)	482
Eco31I	GGTCTC	1 cut(s)	490
Eco53kI	GAGCTC	1 cut(s)	480
Eco88I	CYCGRG	2 cut(s)	259, 441
Eco91I	GGTNACC	2 cut(s)	386, 425
EcoICRI	GAGCTC	1 cut(s)	480
EcoO109I	RGGNCCY	1 cut(s)	133
EcoO65I	GGTNACC	2 cut(s)	386, 425
EcoT38I	GRGCYC	1 cut(s)	482
FaeI	CATG	1 cut(s)	313
FaiI	YATR	5 cut(s)	144, 209, 311, 369, 421
FalI	AAGNNNNNCTT	4 cut(s)	217, 249, 458, 490
FaqI	GGGAC	1 cut(s)	312
FatI	CATG	1 cut(s)	309
FauI	CCCGC	1 cut(s)	46
Fnu4HI	GCNGC	3 cut(s)	51, 83, 503
FokI	GGATG	1 cut(s)	287
FriOI	GRGCYC	1 cut(s)	482
Fsp4HI	GCNGC	3 cut(s)	51, 83, 503
GlaI	GCGC	2 cut(s)	161, 418
GluI	GCNGC	3 cut(s)	51, 83, 503
HaeII	RGCGCY	1 cut(s)	163
HaeIII	GGCC	1 cut(s)	135
HapII	CCGG	3 cut(s)	16, 94, 170
HhaI	GCGC	2 cut(s)	162, 419
Hin1II	CATG	1 cut(s)	313
Hin6I	GCGC	2 cut(s)	160, 417
HinP1I	GCGC	2 cut(s)	160, 417
HinfI	GANTC	3 cut(s)	100, 123, 177
HpaII	CCGG	3 cut(s)	16, 94, 170
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	4 cut(s)	247, 289, 406, 499
Hpy188III	TCNNGA	6 cut(s)	170, 181, 259, 261, 297, 475
Hpy8I	GTNNAC	1 cut(s)	99
Hpy99I	CGWCG	2 cut(s)	80, 274
HpyAV	CCTTC	3 cut(s)	29, 272, 404
HpyCH4III	ACNGT	1 cut(s)	425
HpyCH4IV	ACGT	2 cut(s)	230, 378
HpyCH4V	TGCA	1 cut(s)	367
HpyF10VI	GCNNNNNNNGC	1 cut(s)	79
HpyF3I	CTNAG	2 cut(s)	119, 510
HpySE526I	ACGT	2 cut(s)	230, 378
Hsp92II	CATG	1 cut(s)	313
HspAI	GCGC	2 cut(s)	160, 417
Kpn2I	TCCGGA	1 cut(s)	169
Kzo9I	GATC	4 cut(s)	185, 215, 328, 339
LmnI	GCTCC	2 cut(s)	172, 499
LpnPI	CCDG	5 cut(s)	29, 36, 107, 183, 320
Lsp1109I	GCAGC	1 cut(s)	94
MaeII	ACGT	2 cut(s)	230, 378
MaeIII	GTNAC	2 cut(s)	386, 425
MalI	GATC	4 cut(s)	187, 217, 330, 341
MboI	GATC	4 cut(s)	185, 215, 328, 339
MboII	GAAGA	2 cut(s)	225, 341
MflI	RGATCY	1 cut(s)	185
MhlI	GDGCHC	1 cut(s)	482
MluCI	AATT	3 cut(s)	5, 283, 447
MlyI	GAGTC	1 cut(s)	94
MroI	TCCGGA	1 cut(s)	169
MroXI	GAANNNNTTC	2 cut(s)	232, 348
MseI	TTAA	1 cut(s)	156
MspI	CCGG	3 cut(s)	16, 94, 170
MspR9I	CCNGG	2 cut(s)	16, 94
MwoI	GCNNNNNNNGC	1 cut(s)	79
NciI	CCSGG	2 cut(s)	16, 94
NdeII	GATC	4 cut(s)	185, 215, 328, 339
NlaIII	CATG	1 cut(s)	313
NlaIV	GGNNCC	2 cut(s)	244, 501
NmeAIII	GCCGAG	1 cut(s)	52
PaeR7I	CTCGAG	1 cut(s)	259
PcsI	WCGNNNNNNNCGW	2 cut(s)	266, 503
PdmI	GAANNNNTTC	2 cut(s)	232, 348
PfeI	GAWTC	2 cut(s)	123, 177
PflMI	CCANNNNNTGG	1 cut(s)	436
PkrI	GCNGC	3 cut(s)	52, 84, 504
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
Psp124BI	GAGCTC	1 cut(s)	482
PspEI	GGTNACC	2 cut(s)	386, 425
PspN4I	GGNNCC	2 cut(s)	244, 501
PspPI	GGNCC	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	185
SacI	GAGCTC	1 cut(s)	482
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	3 cut(s)	51, 83, 503
Sau3AI	GATC	4 cut(s)	185, 215, 328, 339
Sau96I	GGNCC	1 cut(s)	133
SchI	GAGTC	1 cut(s)	94
ScrFI	CCNGG	2 cut(s)	16, 94
SduI	GDGCHC	1 cut(s)	482
SetI	ASST	7 cut(s)	115, 233, 253, 307, 381, 415, 482
Sfr274I	CTCGAG	1 cut(s)	259
SlaI	CTCGAG	1 cut(s)	259
SmlI	CTYRAG	4 cut(s)	128, 259, 464, 475
SmoI	CTYRAG	4 cut(s)	128, 259, 464, 475
Sse9I	AATT	3 cut(s)	5, 283, 447
SsiI	CCGC	4 cut(s)	50, 53, 213, 503
SstI	GAGCTC	1 cut(s)	482
StyD4I	CCNGG	2 cut(s)	14, 92
TaaI	ACNGT	1 cut(s)	425
TaiI	ACGT	2 cut(s)	233, 381
TaqI	TCGA	3 cut(s)	218, 260, 342
TaqII	GACCGA	1 cut(s)	472
TasI	AATT	3 cut(s)	5, 283, 447
TauI	GCSGC	2 cut(s)	53, 505
TfiI	GAWTC	2 cut(s)	123, 177
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TseI	GCWGC	1 cut(s)	82
TspDTI	ATGAA	2 cut(s)	291, 298
TspGWI	ACGGA	1 cut(s)	287
Van91I	CCANNNNNTGG	1 cut(s)	436
XhoI	CTCGAG	1 cut(s)	259
XmnI	GAANNNNTTC	2 cut(s)	232, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.