Rroxscaffold_2G00115560

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000483
Physical Location & Seq
Forward (+)
41861640 .. 41863386
1747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00115560.1

Sequence Viewer

Length: 363 bp
ATGAAGGCATTTCGGAACGTCCGGGTTGGCGGATCTCTCGATCTCAACTTTGGACCCGCAAGTTCTACGGATGAAGGTGGATCCATCGATTTGAACTTTGGTCCCACCGTTCCTACAGTGTGCGATGGATCCATCTATCTCGCTTTCGGGTCAAACGTCGACCATCATGTTGACCCAAATTCCACTTCACCCTTCAACAACAACAGTACTACCTCCTTCGGCACAACGGAGGACAACTTTCCATGGAACAACGAGGAGGAGATCAGCGGGAGATCGAAACTCTTCCTCTGGCACGTGGTTGTGAATCCTGTGATCATGGATGATAATGTGAGTTTGGGTCATAAAGCATGTGGGTGGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

12.98

Weight (kDa)

4.6

Isoelectric Point (pI)

43.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000483)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa Rorug04G0280300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 159
AciI CCGC 3 cut(s) 30, 57, 267
AclWI GGATC 5 cut(s) 40, 75, 88, 123, 136
AcsI RAATTY 1 cut(s) 178
AcvI CACGTG 1 cut(s) 295
AfaI GTAC 1 cut(s) 208
AgsI TTSAA 2 cut(s) 94, 196
AjuI GAANNNNNNNTTGG 2 cut(s) 169, 201
AlwI GGATC 5 cut(s) 40, 75, 88, 123, 136
ApoI RAATTY 1 cut(s) 178
Asp700I GAANNNNTTC 1 cut(s) 281
AspS9I GGNCC 2 cut(s) 53, 101
AsuC2I CCSGG 1 cut(s) 23
AsuHPI GGTGA 1 cut(s) 180
AvaII GGWCC 2 cut(s) 53, 101
BamHI GGATCC 2 cut(s) 80, 128
BbrPI CACGTG 1 cut(s) 295
BccI CCATC 4 cut(s) 92, 119, 140, 171
BclI TGATCA 1 cut(s) 312
BcnI CCSGG 1 cut(s) 23
BfmI CTRYAG 1 cut(s) 114
BmcAI AGTACT 1 cut(s) 208
Bme1390I CCNGG 1 cut(s) 23
Bme18I GGWCC 2 cut(s) 53, 101
BmgT120I GGNCC 2 cut(s) 53, 101
BmiI GGNNCC 4 cut(s) 55, 82, 103, 130
BmrFI CCNGG 1 cut(s) 23
BpuMI CCSGG 1 cut(s) 23
Bsa29I ATCGAT 1 cut(s) 87
BsaAI YACGTR 1 cut(s) 295
BsaJI CCNNGG 1 cut(s) 242
BseCI ATCGAT 1 cut(s) 87
BseDI CCNNGG 1 cut(s) 242
BseGI GGATG 2 cut(s) 76, 325
BseRI GAGGAG 2 cut(s) 269, 272
BshVI ATCGAT 1 cut(s) 87
BsiSI CCGG 1 cut(s) 22
BslFI GGGAC 1 cut(s) 87
BsmFI GGGAC 1 cut(s) 87
Bsp143I GATC 7 cut(s) 32, 40, 80, 128, 261, 272, 312
Bsp19I CCATGG 1 cut(s) 242
BspACI CCGC 3 cut(s) 30, 57, 267
BspDI ATCGAT 1 cut(s) 87
BspLI GGNNCC 4 cut(s) 55, 82, 103, 130
BspPI GGATC 5 cut(s) 40, 75, 88, 123, 136
BssECI CCNNGG 1 cut(s) 242
BssMI GATC 7 cut(s) 32, 40, 80, 128, 261, 272, 312
BssT1I CCWWGG 1 cut(s) 242
Bst4CI ACNGT 3 cut(s) 109, 118, 206
Bst6I CTCTTC 1 cut(s) 287
BstBAI YACGTR 1 cut(s) 295
BstDSI CCRYGG 1 cut(s) 242
BstF5I GGATG 2 cut(s) 76, 325
BstKTI GATC 7 cut(s) 35, 43, 83, 131, 264, 275, 315
BstMBI GATC 7 cut(s) 32, 40, 80, 128, 261, 272, 312
BstNSI RCATGY 1 cut(s) 351
BstSCI CCNGG 1 cut(s) 21
BstSFI CTRYAG 1 cut(s) 114
BstX2I RGATCY 3 cut(s) 32, 80, 128
BstYI RGATCY 3 cut(s) 32, 80, 128
Bsu15I ATCGAT 1 cut(s) 87
BsuTUI ATCGAT 1 cut(s) 87
BtgI CCRYGG 1 cut(s) 242
BtgZI GCGATG 1 cut(s) 138
BtsCI GGATG 2 cut(s) 76, 325
BtsIMutI CAGTG 1 cut(s) 123
Cfr13I GGNCC 2 cut(s) 53, 101
ClaI ATCGAT 1 cut(s) 87
Csp6I GTAC 1 cut(s) 207
CviAII CATG 4 cut(s) 167, 243, 316, 348
CviQI GTAC 1 cut(s) 207
DpnI GATC 7 cut(s) 34, 42, 82, 130, 263, 274, 314
DpnII GATC 7 cut(s) 32, 40, 80, 128, 261, 272, 312
Eam1104I CTCTTC 1 cut(s) 287
EarI CTCTTC 1 cut(s) 287
EciI GGCGGA 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 242
Eco47I GGWCC 2 cut(s) 53, 101
Eco72I CACGTG 1 cut(s) 295
EcoT14I CCWWGG 1 cut(s) 242
ErhI CCWWGG 1 cut(s) 242
FaeI CATG 4 cut(s) 170, 246, 319, 351
FaiI YATR 5 cut(s) 168, 244, 317, 342, 349
FaqI GGGAC 1 cut(s) 87
FatI CATG 4 cut(s) 166, 242, 315, 347
FauI CCCGC 2 cut(s) 64, 260
FbaI TGATCA 1 cut(s) 312
FblI GTMKAC 1 cut(s) 159
FokI GGATG 2 cut(s) 83, 332
HapII CCGG 1 cut(s) 22
Hin1II CATG 4 cut(s) 170, 246, 319, 351
HincII GTYRAC 2 cut(s) 160, 172
HindII GTYRAC 2 cut(s) 160, 172
HinfI GANTC 1 cut(s) 304
HpaII CCGG 1 cut(s) 22
HphI GGTGA 1 cut(s) 180
Hpy166II GTNNAC 3 cut(s) 160, 172, 357
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 1 cut(s) 38
Hpy8I GTNNAC 3 cut(s) 160, 172, 357
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 3 cut(s) 68, 202, 226
HpyCH4III ACNGT 3 cut(s) 109, 118, 206
HpyCH4IV ACGT 3 cut(s) 18, 156, 294
HpySE526I ACGT 3 cut(s) 18, 156, 294
Hsp92II CATG 4 cut(s) 170, 246, 319, 351
Ksp22I TGATCA 1 cut(s) 312
Kzo9I GATC 7 cut(s) 32, 40, 80, 128, 261, 272, 312
LpnPI CCDG 3 cut(s) 35, 274, 321
MaeII ACGT 3 cut(s) 18, 156, 294
MalI GATC 7 cut(s) 34, 42, 82, 130, 263, 274, 314
MboI GATC 7 cut(s) 32, 40, 80, 128, 261, 272, 312
MboII GAAGA 1 cut(s) 274
MflI RGATCY 3 cut(s) 32, 80, 128
MluCI AATT 1 cut(s) 178
MnlI CCTC 5 cut(s) 223, 223, 247, 250, 296
MroXI GAANNNNTTC 1 cut(s) 281
MseI TTAA 1 cut(s) 361
MslI CAYNNNNRTG 1 cut(s) 352
MspA1I CMGCKG 1 cut(s) 267
MspI CCGG 1 cut(s) 22
MspR9I CCNGG 1 cut(s) 23
NciI CCSGG 1 cut(s) 23
NcoI CCATGG 1 cut(s) 242
NdeII GATC 7 cut(s) 32, 40, 80, 128, 261, 272, 312
NlaIII CATG 4 cut(s) 170, 246, 319, 351
NlaIV GGNNCC 4 cut(s) 55, 82, 103, 130
NspI RCATGY 1 cut(s) 351
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PdmI GAANNNNTTC 1 cut(s) 281
PfeI GAWTC 1 cut(s) 304
PmaCI CACGTG 1 cut(s) 295
PmlI CACGTG 1 cut(s) 295
Ppu21I YACGTR 1 cut(s) 295
PspCI CACGTG 1 cut(s) 295
PspN4I GGNNCC 4 cut(s) 55, 82, 103, 130
PspPI GGNCC 2 cut(s) 53, 101
PsuI RGATCY 3 cut(s) 32, 80, 128
RsaI GTAC 1 cut(s) 208
RsaNI GTAC 1 cut(s) 207
RseI CAYNNNNRTG 1 cut(s) 352
SalI GTCGAC 1 cut(s) 158
SaqAI TTAA 1 cut(s) 361
Sau3AI GATC 7 cut(s) 32, 40, 80, 128, 261, 272, 312
Sau96I GGNCC 2 cut(s) 53, 101
ScaI AGTACT 1 cut(s) 208
ScrFI CCNGG 1 cut(s) 23
SetI ASST 5 cut(s) 21, 79, 159, 215, 297
SfcI CTRYAG 1 cut(s) 114
SinI GGWCC 2 cut(s) 53, 101
SmiMI CAYNNNNRTG 1 cut(s) 352
Sse9I AATT 1 cut(s) 178
SsiI CCGC 3 cut(s) 30, 57, 267
StyD4I CCNGG 1 cut(s) 21
StyI CCWWGG 1 cut(s) 242
TaaI ACNGT 3 cut(s) 109, 118, 206
TaiI ACGT 3 cut(s) 21, 159, 297
TaqI TCGA 4 cut(s) 39, 87, 159, 275
TasI AATT 1 cut(s) 178
TatI WGTACW 1 cut(s) 206
TfiI GAWTC 1 cut(s) 304
Tru1I TTAA 1 cut(s) 361
Tru9I TTAA 1 cut(s) 361
TscAI CASTG 1 cut(s) 123
TspDTI ATGAA 2 cut(s) 17, 87
TspGWI ACGGA 2 cut(s) 83, 242
TspRI CASTG 1 cut(s) 123
VpaK11BI GGWCC 2 cut(s) 53, 101
XapI RAATTY 1 cut(s) 178
XceI RCATGY 1 cut(s) 351
XmiI GTMKAC 1 cut(s) 159
XmnI GAANNNNTTC 1 cut(s) 281
ZrmI AGTACT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.